mRNA_H-canaliculatus_M_contigs76235.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76235.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76235.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN5_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.780e-54
Identity = 88/100 (88.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDEKVS 300
            IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGAS EQR+ W++GDLRSHQFTSQSGC+DRRD VLD++LY+ELMEAF+VMGFEEDEK S
Sbjct:  250 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASPEQREGWAMGDLRSHQFTSQSGCYDRRDEVLDSELYQELMEAFKVMGFEEDEKAS 349
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV4_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 5.450e-53
Identity = 89/103 (86.41%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDEKVSAAR 309
            IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGAS EQR+ W++GDLRSHQFTSQSGC+DRRDGVLD++LY+ELMEAF+VMGFEE+EK S  R
Sbjct:  281 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASPEQREGWAMGDLRSHQFTSQSGCYDRRDGVLDSELYQELMEAFKVMGFEEEEKASVFR 383
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin-like (protein n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEN9_SACJA)

HSP 1 Score: 179 bits (454), Expect = 3.520e-51
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDEKVSAAR 309
            IIFD YGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQR+SW++GDL  HQFTSQSGC+DRRDGVLD+DLY EL+EAF VMGFEE+ K +  R
Sbjct:  247 IIFDGYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRESWAMGDLEGHQFTSQSGCYDRRDGVLDSDLYAELIEAFSVMGFEENGKANIFR 349
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI8_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.020e-31
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFE 282
            ++F   GKL GA IKTFLLEK+RVVK S +ERNYHIFY++AAGAS + R++W L    S+ + +QSGC+DRRDGV D DL+ EL EAF  MGF+
Sbjct:  253 LLFSDRGKLAGAAIKTFLLEKIRVVKQSKLERNYHIFYIMAAGASPKDRENWELQPAGSYHYMNQSGCYDRRDGVKDIDLHVELQEAFSTMGFD 346
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin-like (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT5_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 5.170e-31
Identity = 57/94 (60.64%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFE 282
            ++F   GKL GA IKTFLLEK+RVVK S +ERNYHIFY++AAGAS + R++W L    S+ + +QSGC+DRRDGV D DL+ EL EAF  MGF+
Sbjct:  281 LLFSDRGKLAGAAIKTFLLEKIRVVKQSKLERNYHIFYIMAAGASPKDRENWELQPAGSYHYMNQSGCYDRRDGVKDIDLHVELQEAFSTMGFD 374
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BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin-like (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ42_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.560e-29
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMG 276
            I+F   GKL GA I+TFLLEKVRVVK SA+ERNYHIFY L AGA+ +QR  W L + +++ +T+QSGC+DRRDGV DA ++ EL +AF  MG
Sbjct:  247 ILFSDLGKLFGASIRTFLLEKVRVVKQSALERNYHIFYALHAGATPDQRKHWDLKEPQAYTYTNQSGCYDRRDGVTDAAVFAELADAFATMG 338
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.560e-29
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEE 285
            I+F   GKL GA I+TFLLEKVRVVK SA+ERNYHIFY L AGA+ +QR  W L + +++++T+QSGC+DRRDGV D  ++ ELM AF  MG  E
Sbjct:  247 ILFSDLGKLFGASIRTFLLEKVRVVKQSALERNYHIFYALYAGATPDQRKHWDLKEPQAYKYTNQSGCYDRRDGVTDRAVFDELMAAFDTMGVTE 341
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0W6_HETAK)

HSP 1 Score: 107 bits (267), Expect = 5.910e-25
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDE 291
            I FD    L GA ++TFLLEKVR+V  +  ERNYHIFY+L AGA+ E++  W +GD+  + +  QSGC++RRDGV D   Y+E+MEAF ++G  E E
Sbjct:  109 IHFDGSHLLVGAAVRTFLLEKVRLVSQARDERNYHIFYLLCAGAAPEEKARWRIGDVGDYWYLGQSGCYERRDGVRDDAGYREVMEAFSIVGITEAE 205
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: Myosin-like (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM17_9STRA)

HSP 1 Score: 107 bits (267), Expect = 6.070e-25
Identity = 56/104 (53.85%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLG-DLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDEKVSAAR 309
            I FD  G L GA I+TFLLEK+R+V  S  ERN+HIFY + AGA+ E R SW L  D R + + +QS C+ RRDGV DADL+ EL +A  VMG  E+E  S  R
Sbjct:  257 IDFDKEGFLIGAAIRTFLLEKIRLVHTSEQERNFHIFYQMLAGATPEHRASWRLSPDPRLYHYINQSNCYTRRDGVRDADLWGELQQAMLVMGLSEEEMESVFR 360
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX87_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.910e-24
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRDSWSLG-DLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDE 291
            I FD  G L GA I+TFLLEK+R+V  S  ERN+HIFY + AGA+ E R  W L  D R + + +QS C+ RRDGV DADL++EL +A RVMG  ++E
Sbjct:  256 IDFDKDGFLFGAAIRTFLLEKIRLVHTSEQERNFHIFYQMLAGATEECRKRWQLAPDPRIYHYINQSNCYARRDGVRDADLWEELQQAMRVMGMSDEE 353
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76235.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Myosin1.780e-5488.00motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Myosin-like5.450e-5386.41protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Myosin-like3.520e-5183.50protein n=1 Tax=Saccharina japonica TaxID=88149 Re... [more]
Myosin5.020e-3160.64motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Myosin-like5.170e-3160.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Myosin-like1.560e-2960.87protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Myosin-like1.560e-2960.00protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical5.910e-2551.55protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Myosin-like6.070e-2553.85protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
P-loop3.910e-2454.08containing nucleoside triphosphate hydrolase prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76235contigH-canaliculatus_M_contigs76235:84..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLV4
PFAMsFYVE,IQ,Myosin_head,WD40
Model size309
Max annot lvl2759|Eukaryota
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
Exons1
Evalue8.94e-54
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Descriptionmotor activity
Cds size309
COG categoryZ
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.6862588-CDS-H-canaliculatus_M_contigs76235:83..3921696854100.6862588-CDS-H-canaliculatus_M_contigs76235:83..392Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76235 84..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76235.1.1prot_H-canaliculatus_M_contigs76235.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76235 84..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76235.1.1

>prot_H-canaliculatus_M_contigs76235.1.1 ID=prot_H-canaliculatus_M_contigs76235.1.1|Name=mRNA_H-canaliculatus_M_contigs76235.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=103bp
IIFDSYGKLTGAQIKTFLLEKVRVVKHSAMERNYHIFYMLAAGASAEQRD
SWSLGDLRSHQFTSQSGCFDRRDGVLDADLYKELMEAFRVMGFEEDEKVS
AAR
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mRNA from alignment at H-canaliculatus_M_contigs76235:84..392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76235.1.1 ID=mRNA_H-canaliculatus_M_contigs76235.1.1|Name=mRNA_H-canaliculatus_M_contigs76235.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=309bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76235:84..392+ (Hapterophycus canaliculatus Oshoro7m male)
ATAATCTTCGACAGCTACGGCAAGCTGACGGGAGCCCAGATCAAGACCTT
CCTCCTGGAGAAGGTGCGCGTGGTGAAGCACTCGGCCATGGAGCGAAACT
ACCACATCTTCTACATGCTGGCCGCGGGCGCCTCCGCCGAGCAGCGCGAC
AGCTGGTCCCTGGGCGACCTCAGGAGCCACCAGTTCACCTCGCAGTCGGG
GTGCTTCGATCGCCGAGATGGCGTGCTTGACGCGGACCTGTACAAGGAGC
TCATGGAGGCGTTCCGGGTGATGGGTTTCGAGGAAGACGAGAAGGTTAGT
GCGGCGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76235:84..392+

>mRNA_H-canaliculatus_M_contigs76235.1.1 ID=mRNA_H-canaliculatus_M_contigs76235.1.1|Name=mRNA_H-canaliculatus_M_contigs76235.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=309bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76235:84..392+ (Hapterophycus canaliculatus Oshoro7m male)
ATAATCTTCGACAGCTACGGCAAGCTGACGGGAGCCCAGATCAAGACCTT
CCTCCTGGAGAAGGTGCGCGTGGTGAAGCACTCGGCCATGGAGCGAAACT
ACCACATCTTCTACATGCTGGCCGCGGGCGCCTCCGCCGAGCAGCGCGAC
AGCTGGTCCCTGGGCGACCTCAGGAGCCACCAGTTCACCTCGCAGTCGGG
GTGCTTCGATCGCCGAGATGGCGTGCTTGACGCGGACCTGTACAAGGAGC
TCATGGAGGCGTTCCGGGTGATGGGTTTCGAGGAAGACGAGAAGGTTAGT
GCGGCGAGG
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