mRNA_H-canaliculatus_M_contigs762.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs762.4.1
Unique NamemRNA_H-canaliculatus_M_contigs762.4.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNY9_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 1.540e-61
Identity = 122/132 (92.42%), Postives = 125/132 (94.70%), Query Frame = 2 
Query:  122 MEAAQLPADALPPGWSSGGAGAADPESAQRXXXXXXXXXXRRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEEDSDDNDDDMM 517
            MEAAQLPADALP GWSSGGAGA DPESAQR XXXXXXXXX RKQILDQIMTVEARLRLSNIAMVKP+KARRVEEML+HAA SG LGGKVTE QFIQMLEQVSSQMEKKTKVTIKRKTYFDE+DSDDNDDDMM
Sbjct:    1 MEAAQLPADALPAGWSSGGAGAGDPESAQRKXXXXXXXXXXRKQILDQIMTVEARLRLSNIAMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQVSSQMEKKTKVTIKRKTYFDEQDSDDNDDDMM 132
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Double-stranded (DNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.230e-23
Identity = 62/119 (52.10%), Postives = 84/119 (70.59%), Query Frame = 2 
Query:  152 LPPGWSSGGAGAADPESAQRXXXXXXXXXXRRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEEDSDDNDD 508
            LP G+++GG G  DP++A +          +R+ ILDQIM  EAR RL+NIAMVK +KAR +E+ML+ AAK G LGGKV++ QF+QMLE VS+QME+KTKVT++R+    + D    DD
Sbjct:    6 LPEGFTAGGGGM-DPQAAAQKAQQEAAMEDQRRSILDQIMMPEARERLNNIAMVKKDKARALEDMLISAAKQGKLGGKVSQEQFVQMLEGVSAQMERKTKVTMRRRRNIGDSDXXXXDD 123
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Programmed (cell death protein 5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6K2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.260e-20
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 2 
Query:  152 LPPGWSSGGAGAA-------DPESAQRXXXXXXXXXXRRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKK-TKVTIKRKTYFDEEDSDDNDDDMM 517
            LPPG+++ GAG +         E  +           RR+ +LDQI++ EA+ RL+ IA+V+ EK R V++ML+ AA SG L GKV+E Q I+MLEQVSSQ++KK TKVTI+R+   DE D DDNDDDM+
Sbjct:    9 LPPGFTAAGAGMSGAGGRGMSTEEMEAQKAKHAEMEERRQFMLDQILSPEAKERLARIAIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDE-DEDDNDDDML 137
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PGL7_CAVFA)

HSP 1 Score: 82.8 bits (203), Expect = 1.610e-15
Identity = 49/100 (49.00%), Postives = 70/100 (70.00%), Query Frame = 2 
Query:  188 ADPESAQRXXXXXXXXXXRRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEE 487
            ADPE+ QR          RR+ I+ QI+T +AR RLS IAMVKP+KAR++E+ML++AA++G L  KV E + I +LEQ+S +  KKT V +KR+T  D++
Sbjct:   12 ADPEAQQRAMEQKREQEERRQHIILQILTHDARERLSRIAMVKPDKARQIEDMLVNAAQTGRLSEKVDEQKLISLLEQISEKA-KKTTVIMKRRTIEDDD 110
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IJB7_GUITC)

HSP 1 Score: 83.2 bits (204), Expect = 2.790e-15
Identity = 46/98 (46.94%), Postives = 66/98 (67.35%), Query Frame = 2 
Query:  191 DPESAQRXXXXXXXXXXRRKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDE 484
            DPE  +           +R QIL  I++ +AR RLSNIAMVK +KAR+VE+ML+  A+ GA+GG++ E Q I+MLE ++ Q EK+TKVT +R+   D+
Sbjct:   44 DPEQQKAQQERQKAAEDQRTQILKAILSPQARERLSNIAMVKKDKARKVEDMLIMNAQRGAIGGQIDEAQLIEMLESINEQTEKETKVTFQRRRIDDD 141
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Programmed (cell death 5 n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1FVP5_9TELE)

HSP 1 Score: 81.6 bits (200), Expect = 5.390e-15
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 2 
Query:  245 RKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEEDSDD 499
            R  IL Q++   AR RLSN+A+VKPEKA  VE  L+  A+ G LGGK++E   I++LE+VS Q EKKT VT  R+   D +D DD
Sbjct:   35 RNSILAQVLDQSARARLSNLALVKPEKANAVENYLIQMARFGKLGGKISESGLIEILEKVSQQTEKKTTVTFNRRRVMDSDDEDD 119
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: programmed (cell death protein 5 n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2S3Z2_COTGO)

HSP 1 Score: 81.3 bits (199), Expect = 8.880e-15
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 2 
Query:  245 RKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEEDSDDN 502
            R  IL Q++   AR RLSN+A+VKP+KA+ VE  L+  A+ G LGGK+TE   I++LE+VS Q EKK  VT  R+   D +D DDN
Sbjct:   42 RNSILAQVLDQSARGRLSNLALVKPDKAKAVENYLIQMARYGKLGGKITESGLIEILEKVSQQSEKKMTVTFNRRRVMDSDDEDDN 127
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5F5_BRELC)

HSP 1 Score: 80.9 bits (198), Expect = 9.520e-15
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 2 
Query:  254 ILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEK-KTKVTIKRKTYFDEEDSDDNDDDM 514
            ++ Q+M  +AR RL+ IAMVKPEKAR +E+M++  A+ G L  K+ E + I +L QV    EK +TKVTIKR+TYF +ED  D+DD+ 
Sbjct:   31 MIQQVMLPDARERLARIAMVKPEKARAIEDMVIQMAQRGQLAAKIDEEKLIDLLNQVGVNEEKQRTKVTIKRRTYFSDEDDGDDDDEF 118
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Programmed (cell death 5 n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=A0A3Q3A936_KRYMA)

HSP 1 Score: 80.5 bits (197), Expect = 1.300e-14
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 2 
Query:  245 RKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEEDSDD 499
            R  IL Q++   AR RLSN+A+VKPEKA+ VE  L+  A+ G LGGK++E   I++LE+VS Q EKKT VT  R+   D ++ DD
Sbjct:   33 RNTILAQVLEQSARARLSNLALVKPEKAKAVENYLIQMARFGQLGGKISESGLIEILEKVSQQTEKKTTVTFNRRKVMDSDEEDD 117
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Match: Programmed (cell death 5 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1VTZ7_CYPCA)

HSP 1 Score: 80.5 bits (197), Expect = 1.370e-14
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 2 
Query:  245 RKQILDQIMTVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQVSSQMEKKTKVTIKRKTYFDEEDSDD 499
            R  IL Q++   AR RLSN+A+VKP+KA+ VE  L+  A+ G LGGK+TE   I++LE+VS Q EKKT V   R+   D +D DD
Sbjct:   35 RNSILAQVLDQSARARLSNLALVKPDKAKSVENYLIQMARFGQLGGKITEAGLIEILEKVSQQTEKKTTVKFNRRRVMDSDDEDD 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs762.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.540e-6192.42protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNY9... [more]
Double-stranded1.230e-2352.10DNA-binding domain-containing protein n=1 Tax=Trib... [more]
Programmed1.260e-2049.23cell death protein 5 n=2 Tax=Monodopsidaceae TaxID... [more]
Uncharacterized1.610e-1549.00protein n=1 Tax=Cavenderia fasciculata (strain SH3... [more]
Uncharacterized2.790e-1546.94protein n=1 Tax=Guillardia theta (strain CCMP2712)... [more]
Programmed5.390e-1551.76cell death 5 n=1 Tax=Acanthochromis polyacanthus T... [more]
programmed8.880e-1551.16cell death protein 5 n=1 Tax=Cottoperca gobio TaxI... [more]
Uncharacterized9.520e-1550.00protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Programmed1.300e-1450.59cell death 5 n=1 Tax=Kryptolebias marmoratus TaxID... [more]
Programmed1.370e-1450.59cell death 5 n=2 Tax=Cyprinus carpio TaxID=7962 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs762contigH-canaliculatus_M_contigs762:7855..11181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNY9
Preferred namePDCD5
PFAMsdsDNA_bind
Model size1628
Max annot lvl2759|Eukaryota
KEGG rclassRC00726
KEGG koko:K00077,ko:K03354,ko:K03860,ko:K05389,ko:K06875
KEGG TC1.A.1.7
KEGG ReactionR02472,R05916
KEGG Pathwayko00563,ko00770,ko01100,ko01110,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00563,map00770,map01100,map01110,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00119,M00389
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005539,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006915,GO:0006950,GO:0006979,GO:0008047,GO:0008092,GO:0008150,GO:0008201,GO:0008219,GO:0008285,GO:0009636,GO:0009719,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010421,GO:0010468,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010698,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015631,GO:0019222,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033043,GO:0033157,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0036473,GO:0036474,GO:0042127,GO:0042221,GO:0042493,GO:0042542,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046677,GO:0048487,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070201,GO:0070301,GO:0070848,GO:0070887,GO:0071236,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0080090,GO:0090087,GO:0090199,GO:0090200,GO:0090316,GO:0097159,GO:0097237,GO:0097367,GO:0097468,GO:0098772,GO:1901363,GO:1901681,GO:1901700,GO:1901701,GO:1903214,GO:1903332,GO:1903333,GO:1903533,GO:1903636,GO:1903638,GO:1903644,GO:1903645,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904589,GO:1904591,GO:1904951,GO:1905475,GO:1905477,GO:2000116,GO:2001056,GO:2001233,GO:2001235
Exons4
Evalue3.56e-66
EggNOG OGsCOG2118@1|root,KOG3431@2759|Eukaryota
Ec32 ortholog descriptionPDCD5-related protein
Ec32 orthologEc-10_004870.1
EC1.1.1.169
Descriptionregulation of protein import into mitochondrial outer membrane
Cds size399
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04040,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs762.4.1prot_H-canaliculatus_M_contigs762.4.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs762 7976..10073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.261278-UTR-H-canaliculatus_M_contigs762:7854..79751696854100.261278-UTR-H-canaliculatus_M_contigs762:7854..7975Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs762 7855..7975 +
1696854100.345262-UTR-H-canaliculatus_M_contigs762:10073..111811696854100.345262-UTR-H-canaliculatus_M_contigs762:10073..11181Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs762 10074..11181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.282905-CDS-H-canaliculatus_M_contigs762:7975..80771696854100.282905-CDS-H-canaliculatus_M_contigs762:7975..8077Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs762 7976..8077 +
1696854100.302662-CDS-H-canaliculatus_M_contigs762:8923..90051696854100.302662-CDS-H-canaliculatus_M_contigs762:8923..9005Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs762 8924..9005 +
1696854100.3141954-CDS-H-canaliculatus_M_contigs762:9478..95941696854100.3141954-CDS-H-canaliculatus_M_contigs762:9478..9594Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs762 9479..9594 +
1696854100.3335776-CDS-H-canaliculatus_M_contigs762:9974..100731696854100.3335776-CDS-H-canaliculatus_M_contigs762:9974..10073Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs762 9975..10073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs762.4.1

>prot_H-canaliculatus_M_contigs762.4.1 ID=prot_H-canaliculatus_M_contigs762.4.1|Name=mRNA_H-canaliculatus_M_contigs762.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=133bp
MEAAQLPADALPPGWSSGGAGAADPESAQRQAQQEQQEQERRKQILDQIM
TVEARLRLSNIAMVKPEKARRVEEMLMHAAKSGALGGKVTEGQFIQMLEQ
VSSQMEKKTKVTIKRKTYFDEEDSDDNDDDMM*
back to top

mRNA from alignment at H-canaliculatus_M_contigs762:7855..11181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs762.4.1 ID=mRNA_H-canaliculatus_M_contigs762.4.1|Name=mRNA_H-canaliculatus_M_contigs762.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs762:7855..11181+ (Hapterophycus canaliculatus Oshoro7m male)
CGACGCTTGGAGTACTATACCTGCTTCCCATCGTTTTCACCCTCGCGTTT
ACTCTCTCCATCCTGGTAATACCTGGCATCTCGCTCTCCGGCGTTTTTAG
CTTGTACACTTCTAGTCAGGAATGGAGGCTGCACAACTTCCGGCAGACGC
CTTACCTCCAGGATGGTCTTCGGGAGGGGCTGGAGCGGCAGACCCAGAAT
CAGCACAGCGGCAGGCACAGCAGGTGGGGAAGAGTTGCCAGGGAGGGCTT
TAGCAGAGGAAATTTTTTTTTGTGGCCGGATCCTTGCAGCCTGTGGAAAG
GGTGTTATTTTCGCTGATATTTGATACTTGAAAGAAGAAGTATTCCCTTC
TTGCGGCGCAACGTGTTTGAGATAGAGCTTTCGAGCGTGCTCAAGTTGTA
CTTGTCGACTCCGCATACCTGGTGTACCAGAAGTGCAGGTAAGGATCCAT
GACAGAGTGGATAGTACCACGGAGGTGTTTCGGTCAGGTGCATCCCTGGA
CTAGTACAGCTGCGGAAGATTGCAGGGTTGGCATGGATGTTCGCAGTGAA
GAACAAGCGAGTGTGGTGATTTCAAGGGCTCGAGACCGAAATTGATTATC
GTCAGGATAGCTGTTTTCGATCTCGAGGCTCCTGTATAACTACAGCGTCT
CAGTATCCCGAACCAAGTAACTGTAGAAGGTCTGAGAGACAACCCTCAAC
ACCAATGCGTCTACCAGTCTATCTAGCCGTTCAGCTCACGCCGTGGAAAA
TAAAACCGTCCTCCCTGACCATGTGGTCCTCCCGTAATTTCACAGAGGAG
AGATGAAACGGCAACCATCAAACAGAGTAGCTCAAATTGTGGGTGACGAA
TCACGAGATGTACAGCGTCACAAGCAAACCACCTTCTGTGGATACGGCAG
CGGCACCACGAGATCACGACAAATGGACGAACTCCATATTTTTTTTTAGT
TTGATCCCGCCGTGTGACCAACGCTCAAGTACTAGCTCCACAGTTGTTGA
GTTATCTCAACAGCAGTGGTTGTCTGCACGACCGCCTTTCTCGCTTCTCT
TTCTGGCTCGCGACCACAGGAGCAGCAGGAACAGGAACGACGAAAGCAAA
TCCTGGACCAAATCATGACGGTCGAGGCACGCCTCCGGCTCAGCAACATC
GGTACGTTCCGCACGCATGGACATGCCTGTGTAGCCGCATATCCTGCTGC
GCTGATGCTATGGCTCAAAACGTTTTTTAGGGGGTCGATTCCCATTGAAG
GTCCTAGGCGTCTAATACCACATGCTCACACGCGATCAGTACGCTTCGCG
TGCAATACACAACATGCCGACACAGAGTTGATTAATGCTCTTCTGCGTCG
CATGCATTTTCTTTCGACCTATTGAAGAAGGGAAAAAACGTACGCTCGCT
CTCATCTTGCTCGCGTGGCATGTTGATGTTACCGTTGGGCTCAACGTAGG
CATCGCGAAGGGTTACACCGCCCCTGGTATGTCAAGCACGCGTGCGATAA
GACTTATCTCGGACTAGTGGAGGATTTGCATCCGTACATTACACTTGAGA
CAGAACTCGGCATGTTGATTTACACCCCCACCCTTCCTTTCGATCCCGGG
CAATGTTCTTGCTTATGCACACAGCCATGGTCAAGCCGGAGAAAGCGAGA
CGTGTGGAGGAGATGCTAATGCACGCCGCCAAATCCGGGGCGCTCGGCGG
CAAGGTGACCGAGGGGCAGTTCATCCAGATGCTTGAGCAGGTGAGATGAG
TGGGATCGGACCTTATCCGAGAGTCTCGGAGATACACGAGTAGAGTCAAG
GGTTTAAAAAATGTGATGTTGTCGGGCGGAATCGTGCGCAAGATACGGCG
ACGAAGTCCTCCTCGTTCAAGCCGGACGCTGCCCACCTTTTTGGCATTCG
AGATTTGTCCGTAGAGGTTTCGACGTATGGGAAGTCCCTCTGTCCAGTAT
TAAGTCTTGGTTGTACGATATCGCTTTCCACGTCTGTTGCCTCTGCATGA
ACTTAGAGCTTCCGGTAGTGAATCGACGGCAGCGGGCTTTCGGAAGTATT
CTTGTTCACCCCCTTGCTGGTTCATTCCTCGTTTTTGATTACCTTTGTGG
TGTGTCTCGCCTTCACCCAGGTTAGCTCGCAGATGGAGAAGAAGACCAAG
GTGACTATCAAGAGGAAGACATACTTTGACGAAGAAGATTCGGACGACAA
CGATGACGACATGATGTAGAAGTGTGTCAGTGGAAACGACGGGCGTTAGT
CTGACCTTGGCGCTCTTGTACTGTAGTTGGGGCGCGCAGTTTAGGTAGAG
CATCGGAGAAAGAGACCTTGTGTGTTGCCACGCGAAACGATTTTATTTTG
TGAAGGAAAGTAGTTTAGCGATGGATCTAACACTACTTACAGAAAGAGCT
TCTCCTCGACGGCTGCCACGAAAAAACGTTGAGTTCGTTCAATACGAGCC
CCGACTTGTTGTATATACTCCAGTTGGAGCAGTCTCAGTTATACAAGTTG
GGCAAAATACCGTCGTCTTGAAACATTTGCAGCATTGGCCAAGAGAGGGC
CTCCTGATAACGAAACTTGAGAGTATTTCATAGATGGAGTTTGTCTTTCG
GAGCACGCAAGACCAAGGCATTCCACTTGTTTGGACTTTGTTCACAGTCG
TCTGCTACTTGTACTGTCGAGCGTGAGTGTTTGCTGTTTGGAGCCGCGCA
TACAACGCTTGAGACGCGTAGACTTTGCTCCTCGCCATTTGCAGCAGAGT
TCTTTACGTGTTTGGGGCGCTTAGCTATCCGTTTGCATTTCGTGCCGCCA
TGTATTACTGGAGCAGTTGGGTCTTGATGGTCGCCGCATTTAAACACGGT
CGACTGGCAACTTGGCCTGTTGCGCAGCATGCCCCAAGATTGCCCAGGGT
TGTGCGTTCCTGATTCAAGCATCACGCGATGCCCATCCTTGCTACTTGTA
CTAGATTTTGGGCGTGGACTCCTAGCAAAGTCATGTTGACTGCGAACCTC
GGGGACGGCCCCACAAACGCGGTCACTACCAAACCCAAAAGGAAAGCAAG
GGCGCGAACTAAATCGAAGAGCAACTGTTGAGCAATTGATTGCAAGTGCC
GACAACGTCGAGTTGGGTTGTTCGTAGAGTGGAAATGGCGATCCAATTCT
ATCCGAAGGATGAAGCGCGTGGAGCTAAAGCCTCTTCGTGTCATGTTGAC
TTGTTTGATGTCATCGGCCTGCGCAGGTGTTGAGAGCAAAATCGACGGCC
ATCACGACCAGCCTGCGGCTATTATTGTAGACGCCACTGACGTTTGATAA
TCGATTTTCTCCTGCACCTCCCAAGCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs762:7855..11181+

>mRNA_H-canaliculatus_M_contigs762.4.1 ID=mRNA_H-canaliculatus_M_contigs762.4.1|Name=mRNA_H-canaliculatus_M_contigs762.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=399bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs762:7855..11181+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAGGCTGCACAACTTCCGGCAGACGCCTTACCTCCAGGATGGTCTTC
GGGAGGGGCTGGAGCGGCAGACCCAGAATCAGCACAGCGGCAGGCACAGC
AGGAGCAGCAGGAACAGGAACGACGAAAGCAAATCCTGGACCAAATCATG
ACGGTCGAGGCACGCCTCCGGCTCAGCAACATCGCCATGGTCAAGCCGGA
GAAAGCGAGACGTGTGGAGGAGATGCTAATGCACGCCGCCAAATCCGGGG
CGCTCGGCGGCAAGGTGACCGAGGGGCAGTTCATCCAGATGCTTGAGCAG
GTTAGCTCGCAGATGGAGAAGAAGACCAAGGTGACTATCAAGAGGAAGAC
ATACTTTGACGAAGAAGATTCGGACGACAACGATGACGACATGATGTAG
back to top