mRNA_H-canaliculatus_M_contigs76194.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76194.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76194.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Tyrosine-protein (kinase YwqD n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AAB1_9BACT)

HSP 1 Score: 148 bits (374), Expect = 9.130e-39
Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1
Query:   10 FSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            F  F G+     G    T   SL+ N ++   R   +LV S+SF+H++PELCE +VKA+S +IQ+ F EKHKSSRSE++RLI++ATDQLQP++ +LE+RYR+FRTTAPLVWN++G A NPHRERQ +LT
Sbjct:  125 FEVFRGQFENQPGVFGGTASKSLKFNTDLQDVRSGSSLVASMSFEHTDPELCEAAVKAYSAAIQQLFAEKHKSSRSELMRLISVATDQLQPKMTELEQRYRDFRTTAPLVWNEKGEAVNPHRERQLFLT 253          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Tyrosine-protein (kinase ptk n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6BXS9_9BACT)

HSP 1 Score: 144 bits (362), Expect = 3.900e-37
Identity = 68/132 (51.52%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    1 DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            +P F  F        GS      S+L+ + ++   R + +LV +LSF+ ++P+LCE +VK+FS S+Q+ F EKHK+SRSE++RLIT+ATDQLQP++ +LE++YR+FRT APLVWN++G+A NPHRERQ YLT
Sbjct:  117 NPSFEIFRDRFQNRSGSFAGMSASALKFHTDLQDARSASSLVATLSFEGTDPDLCEAAVKSFSSSLQKMFAEKHKTSRSELMRLITVATDQLQPKMAKLEQQYRDFRTQAPLVWNEQGVAVNPHRERQLYLT 248          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Exopolysaccharide (biosynthesis protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5U569_9BACT)

HSP 1 Score: 142 bits (358), Expect = 1.340e-36
Identity = 69/132 (52.27%), Postives = 98/132 (74.24%), Query Frame = 1
Query:    1 DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            D  F +F  +  ++  +       +L+ +P++ G R + +LV +L+F+ S+ ELC  +VKA+S ++Q  F EKHKSSR+E+LRLITLATDQLQP++ +LE+RYR+FRT+APLVWN+EG A NPHRERQ YLT
Sbjct:  121 DDSFDAFRAKFNDDPRAFAGMSSKALQFSPDVQGTRSASSLVATLAFESSDRELCLGAVKAYSSALQRLFAEKHKSSRTELLRLITLATDQLQPKMTELEQRYRDFRTSAPLVWNEEGKAVNPHRERQLYLT 252          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: polysaccharide (biosynthesis tyrosine autokinase n=1 Tax=Rhodopirellula sp. JC740 TaxID=2894199 RepID=UPI001E46723C)

HSP 1 Score: 142 bits (357), Expect = 1.860e-36
Identity = 68/121 (56.20%), Postives = 93/121 (76.86%), Query Frame = 1
Query:   34 GENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            G N  +LL     SL+   +++  R S ++V SLSF+HS+PELCE +VKA+S ++Q  F EKHKSSRSE++RLI+LATD+L P +++LE+++R FRT+APLVWN+ G A NPHRERQ YLT
Sbjct:  154 GGNPSNLLGIASKSLKFEADVADTRSSSSIVASLSFEHSDPELCEAAVKAYSAAVQNLFAEKHKSSRSELIRLISLATDKLGPELKRLEEKHRTFRTSAPLVWNENGDAINPHRERQLYLT 274          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Exopolysaccharide (synthesis protein n=2 Tax=Rhodopirellula sp. SWK7 TaxID=595460 RepID=M5T8W8_9BACT)

HSP 1 Score: 140 bits (353), Expect = 6.240e-36
Identity = 69/132 (52.27%), Postives = 95/132 (71.97%), Query Frame = 1
Query:    1 DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            D  F  F  + G+N          +L+ N ++   R + +LV +L+F+ ++ ELC  +VKA+S ++Q+ F EKHKSSR+E+LRLIT+ATDQLQP++ +LEKRYR+FRT APLVWN+EG A NPHRERQ YLT
Sbjct:   96 DESFEVFRSKFGDNPAGFAGASGEALQFNADVQDTRSASSLVATLAFESTDSELCVGAVKAYSAALQKLFAEKHKSSRTELLRLITMATDQLQPKMVELEKRYRDFRTDAPLVWNEEGKAVNPHRERQLYLT 227          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Exopolysaccharide (biosynthesis protein n=3 Tax=Rhodopirellula TaxID=265488 RepID=F2ARR3_RHOBT)

HSP 1 Score: 140 bits (352), Expect = 8.840e-36
Identity = 65/123 (52.85%), Postives = 94/123 (76.42%), Query Frame = 1
Query:   28 ENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            EN  N+ + L     +L    ++ G RG+ ++V +++F+H++PELCE +++AFS S Q+FF ++HKSSRSE++ LI++ATDQLQP++ +LE+RYREFRT APLVW+  G A NPHRERQ YLT
Sbjct:  156 ENNPNLFAGL--ANGALEFETDLQGVRGASSIVANMTFEHTDPELCEAAIRAFSSSFQQFFADRHKSSRSELMSLISVATDQLQPKLTELEERYREFRTNAPLVWDQNGAAINPHRERQLYLT 276          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Tyrosine-protein (kinase ptk n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5ZBQ3_9BACT)

HSP 1 Score: 138 bits (347), Expect = 4.030e-35
Identity = 65/131 (49.62%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    1 DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYL 393
            DPR   F  E   N+ + +   Q S+ L  EI   R +Q+LV  L FQH++PEL E +VK+FSD++Q+FF E+HK+SR +++RLI++A +QL P++ +LE++YR+FR  APLVWN +G A NPHRERQ +L
Sbjct:   97 DPRMVPFHEEFEGNVSNFISVAQKSMELESEIQDVRSAQSLVAVLRFQHTDPELAEAAVKSFSDALQKFFNERHKNSRGDLIRLISVAIEQLHPKMSELERQYRDFRRDAPLVWNADGAAINPHRERQLFL 227          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Tyrosine-protein (kinase ptk n=1 Tax=Rubripirellula amarantea TaxID=2527999 RepID=A0A5C5WRI8_9BACT)

HSP 1 Score: 137 bits (345), Expect = 7.670e-35
Identity = 63/131 (48.09%), Postives = 94/131 (71.76%), Query Frame = 1
Query:    1 DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYL 393
            D R   +  +   +  + L T   SL+L PE+S  R +Q+L+  +SFQH+N +LCE +VK+F+D++++F+ E+HKSSR E+LRLIT+A + L P++ +LE +Y +FRT APL WN+EG A NPHRERQ +L
Sbjct:  118 DERMQPYREQFDNSFRAFLATAIESLKLEPEVSDIRNAQSLIAVMSFQHTNADLCENAVKSFNDALEDFYNERHKSSRDELLRLITVAINDLHPKMNELENKYSQFRTNAPLAWNNEGEAINPHRERQLFL 248          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: polysaccharide (biosynthesis tyrosine autokinase n=1 Tax=Rhodopirellula sp. JC737 TaxID=2894198 RepID=UPI001E48FD1F)

HSP 1 Score: 137 bits (344), Expect = 1.060e-34
Identity = 61/107 (57.01%), Postives = 88/107 (82.24%), Query Frame = 1
Query:   76 LRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYLT 396
            L    ++   RG+ ++V +++F+H++PELCE +++AFS S Q+FF ++HKSSRSE++ LI++ATDQLQP++ +LE+RYREFRTTAPLVW++ G A NPHRERQ YLT
Sbjct:  171 LEFETDLQDLRGASSIVANMTFEHTDPELCEAAIQAFSASFQKFFADRHKSSRSELMNLISVATDQLQPKLTELEERYREFRTTAPLVWDENGAAINPHRERQLYLT 277          
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Match: Tyrosine-protein (kinase ptk n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DN26_9BACT)

HSP 1 Score: 136 bits (342), Expect = 1.910e-34
Identity = 66/131 (50.38%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHSNPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLEKRYREFRTTAPLVWNDEGIATNPHRERQFYL 393
            DPR   F  +   N G  ++  + SL L  EI+  R +Q+LV  L FQH++PEL E +VK+FSD++Q+FF E+H+SSR ++LRLI++A +QL P++ +LE++YR+FR  APLVWN +G A NPHRERQ +L
Sbjct:   95 DPRMVPFHEQFLGNPGEFIKMSRESLELESEITDVRSAQSLVAVLRFQHTDPELAEAAVKSFSDALQKFFNERHRSSRGDLLRLISVAIEQLHPKMSELERQYRDFRRDAPLVWNTDGSAINPHRERQLFL 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76194.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tyrosine-protein9.130e-3955.81kinase YwqD n=1 Tax=Rhodopirellula pilleata TaxID=... [more]
Tyrosine-protein3.900e-3751.52kinase ptk n=1 Tax=Planctomycetes bacterium Poly21... [more]
Exopolysaccharide1.340e-3652.27biosynthesis protein n=2 Tax=Rhodopirellula TaxID=... [more]
polysaccharide1.860e-3656.20biosynthesis tyrosine autokinase n=1 Tax=Rhodopire... [more]
Exopolysaccharide6.240e-3652.27synthesis protein n=2 Tax=Rhodopirellula sp. SWK7 ... [more]
Exopolysaccharide8.840e-3652.85biosynthesis protein n=3 Tax=Rhodopirellula TaxID=... [more]
Tyrosine-protein4.030e-3549.62kinase ptk n=1 Tax=Planctomycetes bacterium CA13 T... [more]
Tyrosine-protein7.670e-3548.09kinase ptk n=1 Tax=Rubripirellula amarantea TaxID=... [more]
polysaccharide1.060e-3457.01biosynthesis tyrosine autokinase n=1 Tax=Rhodopire... [more]
Tyrosine-protein1.910e-3450.38kinase ptk n=1 Tax=Novipirellula aureliae TaxID=25... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76194contigH-canaliculatus_M_contigs76194:72..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog595460.RRSWK_05514
PFAMsAAA_31
Model size423
Max annot lvl203682|Planctomycetes
KEGG koko:K16554
KEGG TC8.A.3.1
KEGG Pathwayko05111,map05111
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.02e-36
EggNOG OGsCOG0489@1|root,COG3206@1|root,COG0489@2|Bacteria,COG3206@2|Bacteria,2IZZC@203682|Planctomycetes
DescriptionNUBPL iron-transfer P-loop NTPase
Cds size423
COG categoryD
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.0468984-CDS-H-canaliculatus_M_contigs76194:71..4941696854100.0468984-CDS-H-canaliculatus_M_contigs76194:71..494Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76194 72..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76194.1.1prot_H-canaliculatus_M_contigs76194.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76194 72..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76194.1.1

>prot_H-canaliculatus_M_contigs76194.1.1 ID=prot_H-canaliculatus_M_contigs76194.1.1|Name=mRNA_H-canaliculatus_M_contigs76194.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=141bp
DPRFSSFVGENGENIGSLLRTVQSSLRLNPEISGGRGSQALVTSLSFQHS
NPELCEQSVKAFSDSIQEFFREKHKSSRSEVLRLITLATDQLQPRIEQLE
KRYREFRTTAPLVWNDEGIATNPHRERQFYLTLSPMNANG*
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mRNA from alignment at H-canaliculatus_M_contigs76194:72..494+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76194.1.1 ID=mRNA_H-canaliculatus_M_contigs76194.1.1|Name=mRNA_H-canaliculatus_M_contigs76194.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=423bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76194:72..494+ (Hapterophycus canaliculatus Oshoro7m male)
GACCCTCGTTTCTCGTCGTTTGTTGGTGAGAATGGCGAAAACATCGGAAG CCTGCTTAGGACCGTCCAGTCTTCACTCAGGCTAAATCCGGAAATTTCAG GTGGGCGCGGGAGTCAAGCTCTCGTCACTTCGCTTTCCTTCCAGCACTCA AATCCGGAGCTCTGCGAGCAATCGGTCAAAGCGTTTAGTGATTCAATTCA AGAGTTCTTCCGTGAGAAGCACAAAAGTTCGCGTAGTGAAGTTTTGCGAC TAATCACCCTGGCTACTGACCAACTTCAGCCCAGGATCGAGCAACTAGAA AAGCGATACCGTGAGTTTCGCACCACTGCCCCACTGGTGTGGAACGATGA GGGAATCGCCACAAATCCGCACCGAGAGCGTCAGTTCTATTTGACGCTTT CGCCGATGAACGCTAATGGTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76194:72..494+

>mRNA_H-canaliculatus_M_contigs76194.1.1 ID=mRNA_H-canaliculatus_M_contigs76194.1.1|Name=mRNA_H-canaliculatus_M_contigs76194.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=423bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76194:72..494+ (Hapterophycus canaliculatus Oshoro7m male)
GACCCTCGTTTCTCGTCGTTTGTTGGTGAGAATGGCGAAAACATCGGAAG
CCTGCTTAGGACCGTCCAGTCTTCACTCAGGCTAAATCCGGAAATTTCAG
GTGGGCGCGGGAGTCAAGCTCTCGTCACTTCGCTTTCCTTCCAGCACTCA
AATCCGGAGCTCTGCGAGCAATCGGTCAAAGCGTTTAGTGATTCAATTCA
AGAGTTCTTCCGTGAGAAGCACAAAAGTTCGCGTAGTGAAGTTTTGCGAC
TAATCACCCTGGCTACTGACCAACTTCAGCCCAGGATCGAGCAACTAGAA
AAGCGATACCGTGAGTTTCGCACCACTGCCCCACTGGTGTGGAACGATGA
GGGAATCGCCACAAATCCGCACCGAGAGCGTCAGTTCTATTTGACGCTTT
CGCCGATGAACGCTAATGGTTAG
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