mRNA_H-canaliculatus_M_contigs76192.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76192.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76192.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6ARZ4_9BACT)

HSP 1 Score: 271 bits (692), Expect = 1.450e-88
Identity = 136/176 (77.27%), Postives = 153/176 (86.93%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIA+I IL+GLLLPAVQAAREAARRVQCSNNLKQIGL +HNYESTYR+IPWGAKGGWGHSWTTDILA++EQTALAD +PYGERG ATGGL ES  FRELARAPVM FRCPSQYGP+++ ESVDQI+GRVLNSYL NGGG+V  D+Y+        PE+  +GFD G+GVFLATD
Sbjct:    5 LVVIAVIAILIGLLLPAVQAAREAARRVQCSNNLKQIGLALHNYESTYRKIPWGAKGGWGHSWTTDILAFLEQTALADTIPYGERGGATGGLLESQRFRELARAPVMAFRCPSQYGPIAMAESVDQITGRVLNSYLGNGGGNVGKDDYSRNPLVNI-PED--VGFDQGDGVFLATD 177          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Protein (containing DUF1559 n=3 Tax=Rhodopirellula TaxID=265488 RepID=M5T272_9BACT)

HSP 1 Score: 264 bits (674), Expect = 1.590e-85
Identity = 129/176 (73.30%), Postives = 149/176 (84.66%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIAIIG++VGLLLPAVQAAREAARRVQC+NNLKQIGLG+HNYE+TYRRIPWGAKGGWG SWTTDIL +IE+TALAD VPYGE G  TGG PES  FR+LA+ PVMTFRCPSQYGP+++GES+DQI GR+LNSYL  GGG+V  DNY+          + ++GF+ GNGVFLATD
Sbjct:   35 LVVIAIIGVMVGLLLPAVQAAREAARRVQCANNLKQIGLGIHNYEATYRRIPWGAKGGWGLSWTTDILGFIEETALADIVPYGEPGGPTGGHPESQRFRQLAQTPVMTFRCPSQYGPIAVGESIDQIEGRILNSYLGIGGGNVNSDNYS---------TSSKIGFERGNGVFLATD 201          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Secreted (protein containing DUF1559 n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5UMV2_9BACT)

HSP 1 Score: 258 bits (660), Expect = 5.850e-84
Identity = 128/174 (73.56%), Postives = 144/174 (82.76%), Query Frame = 1
Query:    7 VIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            VIAIIG++VGLLLPAVQAAREAARRVQCSNNLKQIGLG+HNYE+TYRRIPWGAKGGWG SWTTDIL +IEQ ALAD VPYGE G  TGG  ES  FR+LA+ PVM FRCPSQYGP++LGES+DQI GRVLNSYL  GGG+V+ DNY+            ++GFD G+GVFLATD
Sbjct:    2 VIAIIGVMVGLLLPAVQAAREAARRVQCSNNLKQIGLGIHNYEATYRRIPWGAKGGWGLSWTTDILGFIEQRALADIVPYGEPGGPTGGQIESQRFRQLAQTPVMAFRCPSQYGPIALGESIDQIEGRVLNSYLGIGGGNVQTDNYS----------TSRIGFDKGDGVFLATD 165          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Uncharacterized (protein n=11 Tax=Rhodopirellula TaxID=265488 RepID=Q7UUP4_RHOBA)

HSP 1 Score: 241 bits (615), Expect = 5.610e-77
Identity = 124/176 (70.45%), Postives = 140/176 (79.55%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIAII ILVGLLLPAVQAAREAAR+VQC+NNLK IGL +HNYES YR +PWGAKGGWG SWTTDILA++EQ  LAD VPYGERG ATGGLPESV FR+LA APVM FRCPSQ GPV+L +  D+I+GRV N+YL NGG DV   N+ +    +       +GFD GNGVFLATD
Sbjct:   12 LVVIAIIAILVGLLLPAVQAAREAARKVQCTNNLKNIGLALHNYESVYRTLPWGAKGGWGPSWTTDILAFLEQRELADIVPYGERGGATGGLPESVRFRQLATAPVMVFRCPSQIGPVALSQPGDKITGRVRNTYLGNGGSDV---NWNEHSMFD------YIGFDRGNGVFLATD 178          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1EBR7_RHOIS)

HSP 1 Score: 236 bits (601), Expect = 8.590e-75
Identity = 123/176 (69.89%), Postives = 135/176 (76.70%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIAII ILVGLLLPAVQAAREAAR+VQCSNNLK IGL +HNYES YR +PWGAKGGWG SWTTDILA++EQT LA+ VPYGE G  TGGLPESV FR+LA APVM FRCPSQ GP +L +  D+I GRV N+YL NGG DV   N+ D     T       GFD GNGVF ATD
Sbjct:   17 LVVIAIIAILVGLLLPAVQAAREAARKVQCSNNLKNIGLALHNYESVYRTLPWGAKGGWGPSWTTDILAFLEQTQLAEIVPYGEPGGPTGGLPESVRFRQLATAPVMVFRCPSQLGPTALSQPTDKIDGRVRNTYLGNGGSDV---NWNDHSIFGT------TGFDRGNGVFRATD 183          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: DUF1559 (domain-containing protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E5917C0)

HSP 1 Score: 220 bits (561), Expect = 4.280e-69
Identity = 108/162 (66.67%), Postives = 123/162 (75.93%), Query Frame = 1
Query:   40 LLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLAT 525
            +LPAVQAAREAAR+VQCSNNLK IGL +HNYES YR +PWGAKGGWG SWTTDILA++EQT LAD VPYGERG  TG LPESV FR+LA APVM FRCPSQ GP++     D+I GRV NSYL N G ++  + Y+        P+   LGFD GNGVFLAT
Sbjct:    1 MLPAVQAAREAARKVQCSNNLKNIGLAIHNYESVYRTMPWGAKGGWGPSWTTDILAFLEQTQLADIVPYGERGGPTGNLPESVRFRQLATAPVMVFRCPSQIGPIAQSMPSDRIQGRVRNSYLGNAGSNINWNEYSI-------PDFDLLGFDEGNGVFLAT 155          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Prepilin-type (cleavage/methylation domain-containing protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1VYB1_9BACT)

HSP 1 Score: 217 bits (553), Expect = 2.020e-67
Identity = 113/176 (64.20%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIAI         PAVQAAREAAR+VQC+NNLK IGL +HNYES YR +PWGAKGGWG SWTTDILA++EQ  LAD VPYGE G ATGG PESV FR+LA APVM FRCPSQ GP++L +  D+I GRV N+YL NGG DV   N+ +    +       +GFD GNGVFLATD
Sbjct:   26 LVVIAIXXXXXXXXXPAVQAAREAARKVQCTNNLKNIGLALHNYESVYRTLPWGAKGGWGPSWTTDILAFLEQRQLADIVPYGEPGGATGGRPESVRFRQLATAPVMVFRCPSQIGPIALSDPSDKIVGRVRNTYLGNGGSDV---NWNEHSLFDF------VGFDRGNGVFLATD 192          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6ERD7_9BACT)

HSP 1 Score: 215 bits (548), Expect = 5.200e-67
Identity = 107/173 (61.85%), Postives = 122/173 (70.52%), Query Frame = 1
Query:   10 IAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            IAIIGILVGLLLPAVQAAREAARR QC N+L QI LG+HNYESTYR +PWGAKGGWG SWTTD+L +IEQTAL D+ P GE G  T   PES   RELAR  + T+RCPSQ GP    E +D+++GR LNSYL N G DV  DNY+      T P    +G + GNGV    D
Sbjct:    2 IAIIGILVGLLLPAVQAAREAARRTQCQNHLHQIALGMHNYESTYRTLPWGAKGGWGQSWTTDLLPFIEQTALWDRTPQGEEGWVTSNTPESDRLRELARTAIPTYRCPSQPGPEHFAEEIDRLTGRALNSYLGNAGSDVVRDNYS-----TTGPGPIDIGMEAGNGVLRVAD 169          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rubripirellula reticaptiva TaxID=2528013 RepID=A0A5C6FD27_9BACT)

HSP 1 Score: 216 bits (549), Expect = 8.330e-67
Identity = 110/176 (62.50%), Postives = 127/176 (72.16%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIAIIGILV LLLPAVQAAREAARRVQC N+L+QIGL +HNYESTYR +PWGAKGGWG SWTTDIL +IEQTAL ++ P G+ G AT   PES   RELARA + T+RCPSQ GP   GE +D ++GR LNSYL N G DV+ D Y+          +   G + GNGV   TD
Sbjct:   32 LVVIAIIGILVALLLPAVQAAREAARRVQCQNHLRQIGLAIHNYESTYRAMPWGAKGGWGQSWTTDILPFIEQTALWERTPQGDDGTATSNSPESDRLRELARAAIPTYRCPSQPGPSHFGEEIDLLTGRALNSYLGNAGSDVQRDTYS---------ASGYRGMEAGNGVLRVTD 198          
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517N6F9_9BACT)

HSP 1 Score: 206 bits (524), Expect = 4.780e-63
Identity = 107/176 (60.80%), Postives = 123/176 (69.89%), Query Frame = 1
Query:    1 LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRRIPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRELARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTDKIRCETDPENCQLGFDCGNGVFLATD 528
            LVVIAIIGILVGLLLPAVQAAR AARRVQC N+L+QIGLG+HNYESTYR +PWGAKGGWG SWTTD+L +IEQTAL D+ P GE G AT   PES   REL++  V T+RCPSQ GP  L E    I  R +NSYL N G ++  D Y+          +  LG + GNGV   TD
Sbjct:   31 LVVIAIIGILVGLLLPAVQAARAAARRVQCQNHLRQIGLGMHNYESTYRSLPWGAKGGWGQSWTTDLLPFIEQTALWDRTPQGEEGWATSNTPESQRLRELSQTLVPTYRCPSQPGPDYLSEDGGLIESRAMNSYLGNAGSNIDRDTYS---------TSTYLGMEAGNGVLRVTD 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76192.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.450e-8877.27protein n=1 Tax=Rhodopirellula pilleata TaxID=2714... [more]
Protein1.590e-8573.30containing DUF1559 n=3 Tax=Rhodopirellula TaxID=26... [more]
Secreted5.850e-8473.56protein containing DUF1559 n=2 Tax=Rhodopirellula ... [more]
Uncharacterized5.610e-7770.45protein n=11 Tax=Rhodopirellula TaxID=265488 RepID... [more]
Uncharacterized8.590e-7569.89protein n=2 Tax=Rhodopirellula islandica TaxID=595... [more]
DUF15594.280e-6966.67domain-containing protein n=2 Tax=unclassified Rho... [more]
Prepilin-type2.020e-6764.20cleavage/methylation domain-containing protein n=1... [more]
Uncharacterized5.200e-6761.85protein n=2 Tax=Rubripirellula tenax TaxID=2528015... [more]
Uncharacterized8.330e-6762.50protein n=2 Tax=Rubripirellula reticaptiva TaxID=2... [more]
Uncharacterized4.780e-6360.80protein n=1 Tax=Rubripirellula lacrimiformis TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76192contigH-canaliculatus_M_contigs76192:1..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog595460.RRSWK_04155
Preferred namefimT
PFAMsGspH,N_methyl
Model size528
Max annot lvl2|Bacteria
KEGG koko:K08084
KEGG TC3.A.15.2
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.61e-86
EggNOG OGsCOG4970@1|root,COG4970@2|Bacteria
Descriptionprotein transport across the cell outer membrane
Cds size528
COG categoryNU
BRITEko00000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.0096364-CDS-H-canaliculatus_M_contigs76192:0..5281696854100.0096364-CDS-H-canaliculatus_M_contigs76192:0..528Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76192 1..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76192.1.1prot_H-canaliculatus_M_contigs76192.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76192 1..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76192.1.1

>prot_H-canaliculatus_M_contigs76192.1.1 ID=prot_H-canaliculatus_M_contigs76192.1.1|Name=mRNA_H-canaliculatus_M_contigs76192.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=176bp
LVVIAIIGILVGLLLPAVQAAREAARRVQCSNNLKQIGLGVHNYESTYRR
IPWGAKGGWGHSWTTDILAYIEQTALADKVPYGERGAATGGLPESVLFRE
LARAPVMTFRCPSQYGPVSLGESVDQISGRVLNSYLANGGGDVKIDNYTD
KIRCETDPENCQLGFDCGNGVFLATD
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mRNA from alignment at H-canaliculatus_M_contigs76192:1..528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76192.1.1 ID=mRNA_H-canaliculatus_M_contigs76192.1.1|Name=mRNA_H-canaliculatus_M_contigs76192.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=528bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76192:1..528- (Hapterophycus canaliculatus Oshoro7m male)
CTCGTCGTGATCGCGATCATTGGCATCCTGGTCGGACTGTTGCTTCCGGC CGTCCAAGCGGCTCGGGAAGCTGCTCGACGTGTCCAATGCTCCAATAACC TGAAGCAAATTGGGCTGGGAGTTCACAACTACGAGTCCACCTACCGACGA ATTCCGTGGGGAGCCAAGGGTGGTTGGGGCCATAGCTGGACGACTGACAT CCTGGCCTACATCGAGCAAACCGCTCTCGCGGACAAGGTTCCCTACGGTG AACGAGGCGCGGCAACGGGTGGACTTCCCGAAAGTGTCCTGTTCCGCGAA CTGGCGCGGGCCCCTGTAATGACATTTCGATGCCCATCCCAATACGGGCC GGTTTCACTCGGGGAATCCGTCGACCAAATTTCGGGTCGCGTGCTGAACA GCTACCTGGCCAATGGCGGCGGTGACGTCAAAATCGATAACTACACCGAT AAAATTCGGTGCGAGACCGATCCCGAAAACTGCCAACTTGGATTCGATTG CGGCAATGGTGTTTTTTTGGCAACCGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76192:1..528-

>mRNA_H-canaliculatus_M_contigs76192.1.1 ID=mRNA_H-canaliculatus_M_contigs76192.1.1|Name=mRNA_H-canaliculatus_M_contigs76192.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=528bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76192:1..528- (Hapterophycus canaliculatus Oshoro7m male)
CTCGTCGTGATCGCGATCATTGGCATCCTGGTCGGACTGTTGCTTCCGGC
CGTCCAAGCGGCTCGGGAAGCTGCTCGACGTGTCCAATGCTCCAATAACC
TGAAGCAAATTGGGCTGGGAGTTCACAACTACGAGTCCACCTACCGACGA
ATTCCGTGGGGAGCCAAGGGTGGTTGGGGCCATAGCTGGACGACTGACAT
CCTGGCCTACATCGAGCAAACCGCTCTCGCGGACAAGGTTCCCTACGGTG
AACGAGGCGCGGCAACGGGTGGACTTCCCGAAAGTGTCCTGTTCCGCGAA
CTGGCGCGGGCCCCTGTAATGACATTTCGATGCCCATCCCAATACGGGCC
GGTTTCACTCGGGGAATCCGTCGACCAAATTTCGGGTCGCGTGCTGAACA
GCTACCTGGCCAATGGCGGCGGTGACGTCAAAATCGATAACTACACCGAT
AAAATTCGGTGCGAGACCGATCCCGAAAACTGCCAACTTGGATTCGATTG
CGGCAATGGTGTTTTTTTGGCAACCGAT
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