mRNA_H-canaliculatus_M_contigs76185.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76185.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76185.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: USP (domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI54_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 3.350e-15
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +GSLRDYVTCKECH+ESSRLD+FLDISLVLRPFGSDK  K
Sbjct:  235 QGSLRDYVTCKECHSESSRLDNFLDISLVLRPFGSDKTMK 274
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 47-like isoform x1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AC97_PLAHL)

HSP 1 Score: 60.1 bits (144), Expect = 4.250e-9
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +GSL+DYV C EC  ESSR+D+FLD+SLV+RPFGS +  K
Sbjct:  235 QGSLKDYVQCYECRYESSRIDNFLDLSLVIRPFGSTEMMK 274
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y180_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 4.250e-9
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +G+L+DYV C  C  ESSR+DHFLD+SLV+RPFGS++  K
Sbjct:  252 QGALKDYVQCHACGFESSRIDHFLDLSLVIRPFGSEEMMK 291
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: ubiquitin (carboxyl-terminal hydrolase 47 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026585D9)

HSP 1 Score: 59.7 bits (143), Expect = 5.790e-9
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDK 111
            +GSL+DYV C EC+ ES+R DH+ DI+LV+RPFGSDK
Sbjct:  124 QGSLKDYVKCTECNNESAREDHYQDIALVVRPFGSDK 160
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YL70_PHYSP)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +GSL+DYV C EC  ESSR+D+FLD+SLV+RPFGS +  K
Sbjct:  226 QGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMK 265
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: USP (domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR23_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-8
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARKLRRSAERA 144
            +G+L+DYV C +C  ESSRLD+FLDISLV+RPFGS +   + RS E A
Sbjct:  159 QGTLKDYVQCVKCGNESSRLDNFLDISLVIRPFGSSQ---MMRSVEEA 203
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BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A035_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-8
Identity = 25/40 (62.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +G+L+DYV C EC  ESSR+D+FLD+SLV+RPFGS++  K
Sbjct: 1006 QGTLKDYVQCVECGYESSRIDNFLDLSLVIRPFGSNQMMK 1045
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Uncharacterized (protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2QWR6_PHYPN)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +GSL+DYV C EC  ESSR+D+FLD+SLV+RPFGS +  K
Sbjct:  237 QGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMK 276
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 47 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RFZ2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +GSL+DYV C EC  ESSR+D+FLD+SLV+RPFGS +  K
Sbjct:  239 QGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMK 278
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YII1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.090e-8
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARK 120
            +GSL+DYV C EC  ESSR+D+FLD+SLV+RPFGS +  K
Sbjct:  279 QGSLKDYVQCCECGYESSRIDNFLDLSLVIRPFGSTEMMK 318
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76185.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
USP3.350e-1587.50domain-containing protein (Fragment) n=2 Tax=Ectoc... [more]
Ubiquitin4.250e-965.00carboxyl-terminal hydrolase 47-like isoform x1 n=1... [more]
Uncharacterized4.250e-962.50protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
ubiquitin5.790e-967.57carboxyl-terminal hydrolase 47 n=1 Tax=Galendromus... [more]
Ubiquitin1.070e-865.00carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phy... [more]
USP1.090e-860.42domain-containing protein n=1 Tax=Achlya hypogyna ... [more]
Uncharacterized1.090e-862.50protein (Fragment) n=1 Tax=Thraustotheca clavata T... [more]
Uncharacterized1.090e-865.00protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q... [more]
Ubiquitin1.090e-865.00carboxyl-terminal hydrolase 47 n=5 Tax=Phytophthor... [more]
Uncharacterized1.090e-865.00protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76185contigH-canaliculatus_M_contigs76185:308..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LI54
Preferred nameUSP47
PFAMsUCH,Ubiquitin_2
Model size174
Max annot lvl2759|Eukaryota
KEGG koko:K11857
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000578,GO:0001558,GO:0001654,GO:0001745,GO:0003002,GO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006355,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008595,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009790,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010389,GO:0010466,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0010948,GO:0010951,GO:0010972,GO:0016579,GO:0016787,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0019904,GO:0023051,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030177,GO:0030307,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031329,GO:0031330,GO:0031461,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034644,GO:0035282,GO:0035520,GO:0036211,GO:0036459,GO:0040008,GO:0042176,GO:0042177,GO:0042221,GO:0042493,GO:0042675,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0045861,GO:0045892,GO:0045927,GO:0045930,GO:0045934,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060548,GO:0060828,GO:0060968,GO:0061136,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071987,GO:0080090,GO:0080134,GO:0080135,GO:0090263,GO:0090304,GO:0090596,GO:0101005,GO:0104004,GO:0140096,GO:1901360,GO:1901564,GO:1901799,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902229,GO:1902230,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902749,GO:1902750,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903507,GO:1990234,GO:2000058,GO:2000059,GO:2000112,GO:2000113,GO:2000116,GO:2000117,GO:2001020,GO:2001021,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons1
Evalue5.49e-16
EggNOG OGsCOG5077@1|root,KOG4598@2759|Eukaryota
EC3.4.19.12
Descriptionthiol-dependent ubiquitin-specific protease activity
Cds size174
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.9711685-CDS-H-canaliculatus_M_contigs76185:307..4811696854099.9711685-CDS-H-canaliculatus_M_contigs76185:307..481Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76185 308..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76185.1.1prot_H-canaliculatus_M_contigs76185.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76185 308..481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76185.1.1

>prot_H-canaliculatus_M_contigs76185.1.1 ID=prot_H-canaliculatus_M_contigs76185.1.1|Name=mRNA_H-canaliculatus_M_contigs76185.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=58bp
KGSLRDYVTCKECHAESSRLDHFLDISLVLRPFGSDKARKLRRSAERAEG
CRSRGVG*
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mRNA from alignment at H-canaliculatus_M_contigs76185:308..481-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76185.1.1 ID=mRNA_H-canaliculatus_M_contigs76185.1.1|Name=mRNA_H-canaliculatus_M_contigs76185.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76185:308..481- (Hapterophycus canaliculatus Oshoro7m male)
AAAGGGTCGCTGCGAGACTACGTGACCTGCAAGGAGTGCCACGCGGAGAG
TAGCCGGCTGGACCACTTCCTGGACATCTCGCTCGTTTTGCGGCCCTTCG
GGAGCGACAAGGCGAGAAAATTGCGTCGGTCGGCTGAGAGGGCCGAAGGG
TGCCGCTCTAGGGGGGTGGGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76185:308..481-

>mRNA_H-canaliculatus_M_contigs76185.1.1 ID=mRNA_H-canaliculatus_M_contigs76185.1.1|Name=mRNA_H-canaliculatus_M_contigs76185.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76185:308..481- (Hapterophycus canaliculatus Oshoro7m male)
AAAGGGTCGCTGCGAGACTACGTGACCTGCAAGGAGTGCCACGCGGAGAG
TAGCCGGCTGGACCACTTCCTGGACATCTCGCTCGTTTTGCGGCCCTTCG
GGAGCGACAAGGCGAGAAAATTGCGTCGGTCGGCTGAGAGGGCCGAAGGG
TGCCGCTCTAGGGGGGTGGGATAG
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