mRNA_H-canaliculatus_M_contigs76174.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76174.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76174.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.040e-21
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            +DPSGKR VSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV
Sbjct:  721 KDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 764          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.490e-17
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYAD 138
            +DP+GKRPVS +A++EAGCMTVCRS AW AKMVTSAWWVYAD
Sbjct:  718 KDPAGKRPVSAMAIQEAGCMTVCRSAAWAAKMVTSAWWVYAD 759          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.060e-12
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            +DP G  P+SP+AL EAGCMTVCRS AW +K+  +AWWV+A QV
Sbjct:  584 KDPKGLAPLSPVALHEAGCMTVCRSAAWSSKIFANAWWVHASQV 627          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            ++P    PV PL L +AGCMTVCRS AW +K+VTSAWWVY  QV
Sbjct:  768 KNPHPTAPVPPLTLNQAGCMTVCRSAAWDSKIVTSAWWVYHHQV 811          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Nuclear (export mediator factor NEMF-like protein n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RUI7_9METZ)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            ++P+GK PV P+ L EAGCM +C S AW AK++TSAWWV+ +QV
Sbjct:  553 KNPTGK-PVPPVTLNEAGCMAICFSAAWNAKVITSAWWVHHNQV 595          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NWK7_POMCA)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            ++PSG+ PV P  L EAG M +C S AW AK+VTSAWWVY DQV
Sbjct:  512 KNPSGE-PVPPKTLNEAGTMAICNSAAWDAKVVTSAWWVYHDQV 554          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: CCHC-type (domain-containing protein n=3 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5ALQ6_9ASTE)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   28 KRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            ++PV PL L +AGC TVC S AW +K+VTSAWWVY  QV
Sbjct:  605 EQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPQQV 643          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Serologically (defined colon cancer antigen 1-like protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QG24_CRAGI)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            ++PSG+ PV P +L EAG M +C S AW AK+VTSAWWVY DQV
Sbjct:  550 KNPSGE-PVPPKSLNEAGTMAICNSVAWDAKVVTSAWWVYHDQV 592          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: nuclear (export mediator factor Nemf n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJN0_LINUN)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            ++P+G+ PV P  L EAG M VC S AW AK+VTSAWWVY DQV
Sbjct:  554 KNPTGE-PVPPKTLNEAGTMAVCNSAAWDAKVVTSAWWVYHDQV 596          
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: nuclear (export mediator factor Nemf n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S3YYW5_TOBAC)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   34 PVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
            P+ PL L +AGC TVC+S AW +K+VTSAWWVY +QV
Sbjct:  612 PIPPLTLNQAGCFTVCQSQAWDSKIVTSAWWVYPNQV 648          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.040e-2195.45protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2... [more]
Uncharacterized9.490e-1780.95protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical2.060e-1263.64protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
CCHC-type3.430e-1163.64domain-containing protein n=1 Tax=Chara braunii Ta... [more]
Nuclear5.710e-1059.09export mediator factor NEMF-like protein n=1 Tax=T... [more]
Uncharacterized7.810e-1063.64protein n=2 Tax=Pomacea canaliculata TaxID=400727 ... [more]
CCHC-type1.070e-964.10domain-containing protein n=3 Tax=Nyssaceae TaxID=... [more]
Serologically1.460e-963.64defined colon cancer antigen 1-like protein n=2 Ta... [more]
nuclear1.460e-963.64export mediator factor Nemf n=1 Tax=Lingula unguis... [more]
nuclear1.460e-964.86export mediator factor Nemf n=6 Tax=Nicotiana TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76174contigH-canaliculatus_M_contigs76174:212..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHP2
PFAMsDUF3441,DUF814,FbpA,HECT
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.91e-22
EggNOG OGsCOG1293@1|root,KOG2030@2759|Eukaryota
EC2.3.2.26
Descriptionactin binding
Cds size144
COG categoryK
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.8933809-CDS-H-canaliculatus_M_contigs76174:211..3551696854099.8933809-CDS-H-canaliculatus_M_contigs76174:211..355Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76174 212..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76174.1.1prot_H-canaliculatus_M_contigs76174.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76174 212..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76174.1.1

>prot_H-canaliculatus_M_contigs76174.1.1 ID=prot_H-canaliculatus_M_contigs76174.1.1|Name=mRNA_H-canaliculatus_M_contigs76174.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=48bp
SSFSQDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV
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mRNA from alignment at H-canaliculatus_M_contigs76174:212..355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76174.1.1 ID=mRNA_H-canaliculatus_M_contigs76174.1.1|Name=mRNA_H-canaliculatus_M_contigs76174.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76174:212..355- (Hapterophycus canaliculatus Oshoro7m male)
TCTTCGTTCTCGCAGGATCCCTCCGGGAAGCGCCCCGTATCGCCGCTGGC CCTGGAGGAGGCGGGGTGCATGACCGTCTGTAGGAGCGGAGCGTGGGGGG CGAAGATGGTCACCTCTGCGTGGTGGGTCTACGCCGACCAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76174:212..355-

>mRNA_H-canaliculatus_M_contigs76174.1.1 ID=mRNA_H-canaliculatus_M_contigs76174.1.1|Name=mRNA_H-canaliculatus_M_contigs76174.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76174:212..355- (Hapterophycus canaliculatus Oshoro7m male)
TCTTCGTTCTCGCAGGATCCCTCCGGGAAGCGCCCCGTATCGCCGCTGGC
CCTGGAGGAGGCGGGGTGCATGACCGTCTGTAGGAGCGGAGCGTGGGGGG
CGAAGATGGTCACCTCTGCGTGGTGGGTCTACGCCGACCAGGTG
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