mRNA_H-canaliculatus_M_contigs76174.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 6.040e-21 Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
+DPSGKR VSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV
Sbjct: 721 KDPSGKRAVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 764
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 9.490e-17 Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYAD 138
+DP+GKRPVS +A++EAGCMTVCRS AW AKMVTSAWWVYAD
Sbjct: 718 KDPAGKRPVSAMAIQEAGCMTVCRSAAWAAKMVTSAWWVYAD 759
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.060e-12 Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
+DP G P+SP+AL EAGCMTVCRS AW +K+ +AWWV+A QV
Sbjct: 584 KDPKGLAPLSPVALHEAGCMTVCRSAAWSSKIFANAWWVHASQV 627
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: CCHC-type (domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU) HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11 Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
++P PV PL L +AGCMTVCRS AW +K+VTSAWWVY QV
Sbjct: 768 KNPHPTAPVPPLTLNQAGCMTVCRSAAWDSKIVTSAWWVYHHQV 811
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Nuclear (export mediator factor NEMF-like protein n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RUI7_9METZ) HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10 Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
++P+GK PV P+ L EAGCM +C S AW AK++TSAWWV+ +QV
Sbjct: 553 KNPTGK-PVPPVTLNEAGCMAICFSAAWNAKVITSAWWVHHNQV 595
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NWK7_POMCA) HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10 Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
++PSG+ PV P L EAG M +C S AW AK+VTSAWWVY DQV
Sbjct: 512 KNPSGE-PVPPKTLNEAGTMAICNSAAWDAKVVTSAWWVYHDQV 554
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: CCHC-type (domain-containing protein n=3 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5ALQ6_9ASTE) HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 28 KRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
++PV PL L +AGC TVC S AW +K+VTSAWWVY QV
Sbjct: 605 EQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPQQV 643
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: Serologically (defined colon cancer antigen 1-like protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QG24_CRAGI) HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9 Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
++PSG+ PV P +L EAG M +C S AW AK+VTSAWWVY DQV
Sbjct: 550 KNPSGE-PVPPKSLNEAGTMAICNSVAWDAKVVTSAWWVYHDQV 592
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: nuclear (export mediator factor Nemf n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJN0_LINUN) HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9 Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 13 QDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
++P+G+ PV P L EAG M VC S AW AK+VTSAWWVY DQV
Sbjct: 554 KNPTGE-PVPPKTLNEAGTMAVCNSAAWDAKVVTSAWWVYHDQV 596
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Match: nuclear (export mediator factor Nemf n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S3YYW5_TOBAC) HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9 Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 34 PVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQV 144
P+ PL L +AGC TVC+S AW +K+VTSAWWVY +QV
Sbjct: 612 PIPPLTLNQAGCFTVCQSQAWDSKIVTSAWWVYPNQV 648 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76174.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs76174.1.1 >prot_H-canaliculatus_M_contigs76174.1.1 ID=prot_H-canaliculatus_M_contigs76174.1.1|Name=mRNA_H-canaliculatus_M_contigs76174.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=48bp SSFSQDPSGKRPVSPLALEEAGCMTVCRSGAWGAKMVTSAWWVYADQVback to top mRNA from alignment at H-canaliculatus_M_contigs76174:212..355- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs76174.1.1 ID=mRNA_H-canaliculatus_M_contigs76174.1.1|Name=mRNA_H-canaliculatus_M_contigs76174.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76174:212..355- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76174:212..355- >mRNA_H-canaliculatus_M_contigs76174.1.1 ID=mRNA_H-canaliculatus_M_contigs76174.1.1|Name=mRNA_H-canaliculatus_M_contigs76174.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76174:212..355- (Hapterophycus canaliculatus Oshoro7m male)back to top |