prot_H-canaliculatus_M_contigs7567.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs7567.1.1
Unique Nameprot_H-canaliculatus_M_contigs7567.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length395
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 1.120e-104
Identity = 220/403 (54.59%), Postives = 250/403 (62.03%), Query Frame = 0
Query:    1 MDEPRTSLWSRLVVFYSINKRDQLNPEVMAEIVAKYGSKEKELSARLLKKYGQPLPPSVLPDDLRRVLTEFGMEDQDSLEGAVGRAREEAA--GPAGADPGRSAXXXXXXXXXXXXXXATRKISDRGQGSQREHPAEVREAGGGRERRKDRRMRTGSELDFRSKYFDPLKALQHGTLRPPFPKEPALDNLAKFSRLLPRPRASPAAAASSAGTNRGVLAQRTGDVLPAA---AGAPERGRLGRVDSGGSNVSITAGAAETTEGTDERASTGRPIGG---HYGPLVGSAAAIEKMDRDMAMKRRREXXXXXXXXXXXXXXAVLPAGRAEEKTNPVQRIMQKYAGTGPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEYTAFVPAR 395
            M EPRTSLWSRLVVFYS+NKRDQLN +VMAEIVAKYGSKEKELSARLLKKY +PLPPSV   DLRRVL EFGMED+D   G        A+   P GA    +A   XXXXXX       R     G+G            G G   +       G EL+FRSK+FDPL+AL H TLRPPFPKEPALDNLAKF R+LP+P AS    A++ G               AA   +G    G   R  SGG+ V     AA +  G+ +   T    GG    Y PLV SAA +E+ D+DMA +RR                   PA  AEE+ NPV+RI+Q+YAG+GPY LLYRLHEE RRASVMIRRVNS+RGTCTGLIRAFDRHMNLLLVDV E YTAFVPAR
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGE-----------GAGSSPK-------GDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPR--SGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEAD------PADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPAR 377          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 3.480e-99
Identity = 209/408 (51.23%), Postives = 241/408 (59.07%), Query Frame = 0
Query:    1 MDEPRTSLWSRLVVFYSINKRDQLNPEVMAEIVAKYGSKEKELSARLLKKYGQPLPPSVLPDDLRRVLTEFGMEDQDSLEGAVGRA--REEAAGPAGADPGRSAXXXXXXXXXXXXXXATRKISDRGQGSQREHPAEVREAGGGRERRKDRRMRTGSELDFRSKYFDPLKALQHGTLRPPFPKEPALDNLAKFSRLLPRPRASPAAAASSAGTNRGVLAQRTGDVLPAAA--------GAPERGRLGRVDSGGSNVSITAGAAETTEGTDERASTGRPIGG---HYGPLVGSAAAIEKMDRDMAMKRRREXXXXXXXXXXXXXXAVLPAGRAEEKTNPVQRIMQKYAGTGPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEYTAFVPAR 395
            M EPRTSLWSRLVVFYS+NKRDQLNP+VMAEIVAKYGSKEKELSARLLKKYG+PLP SV   DLRRVL EFGMED+D   G       R     P G      A              A R+  + G+G            G G          TG EL+FRSK+FDPL+AL H TLRPPFP+EPALDNLAKF R+LP+P  S   AA++                  A         G+  RG       GG+ V     AA +  G+ +   T    GG    +G LV SAA +E+ D+DMA++RR                +   AGR     NPV+RI+Q+YAG+GPY LLYRLHEE RRASVMIRRVNS+RGTCTGLIRAFDRHMNLLLVDV E YTAFVPAR
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGE-----------GAGS-------SPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRG-------GGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADS---AGRF----NPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPAR 376          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-12
Identity = 105/364 (28.85%), Postives = 144/364 (39.56%), Query Frame = 0
Query:   29 MAEIVAKYGSKEKELSARLLKKYGQPLPPSVLPDDLRRVLTEFGMEDQDSLEGAVGRAREEAAGPAGADPGRSAXXXXXXXXXXXXXXATRKISDRGQGSQREHPAEVREAGGGRERRKDRRMRTGSELDFRSKYFDPLKALQHGTLRPPFPKEPALDNLAKFSRLLPRPRASPAAAASSAGTNRGVLAQRTGDVLPAAAGAPERGRLGRVDSGGSNVSITAGAAETTEGTDERASTGRPIGGHYGPLVGSAAAIEKMDRDMAMKRRREXXXXXXXXXXXXXXAVLPAGRAEEKTNPVQRIMQKYAG---TGPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEYT 389
            + +I AK+G ++++LSA+L KKY QPLP +V    +R +   FG+ D +  E     A                XXXXXXXXXX     T   +  G  SQ+                +  R     +L+FRS++F+ L ALQ   +  P P    LDN+ KF  LLP                      RT    P A     + R  R           + AAE      ER                 A+  + M                                  ++ +P+  +MQ   G   TGP   L R+  E RR  VMIR VNSVRG C GL++AFD+H N+++VDV E YT
Sbjct:    3 LLQIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPE--EAGAADAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASLGVPSQQAD--------------QQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADHPD-----------------RTVTRPPKAQSGTAQQRHMR-----------SAAAEAQPTAHER----------------QASTQQHM----------------------------------QQADPLALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.230e-10
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 0
Query:  325 PVQRIMQKYAGTGPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEY 388
            P+  I QK    GP+ +L R   E+ R  V++RRVNSVRGTCTG ++AFD+HMNL+L+DV +EY
Sbjct:   73 PLDNI-QKCRHLGPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.430e-10
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 0
Query:  319 AEEKTNPVQRIMQKYAGT---GPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEY 388
            A ++ + V  + ++ A T   GP+ +L R   E+RR  V++RRVNS+RGTC G ++AFD+HMNL+L+DV E Y
Sbjct:  171 AAKRNDAVPTLFERLADTYMDGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.300e-9
Identity = 31/52 (59.62%), Postives = 43/52 (82.69%), Query Frame = 0
Query:  337 GPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEY 388
            GP+R+L R   E+ R  V++RRVNSVRGTC+G ++AFD+HMNL+L+DV +EY
Sbjct:  185 GPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A225WF29_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WF29_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.550e-9
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 0
Query:  316 AGRAEEKTNPVQR-IMQKYAGT---GPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEY 388
            A   ++ T+PV R + ++ A +   GP+R+L R   E+ R  V++RRVNSVRGTC+G ++AFD+H+NL+L+DV +E+
Sbjct:  170 AATVKKTTSPVMRSLFEELADSYLDGPFRILRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHLNLVLLDVTQEF 246          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: UPI00138FF7D1 (uncharacterized protein LOC116603945 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FF7D1)

HSP 1 Score: 70.1 bits (170), Expect = 1.690e-9
Identity = 74/245 (30.20%), Postives = 103/245 (42.04%), Query Frame = 0
Query:  145 RRKDRRMRTGSELDFRSKYFDPLKALQHGTLRPPFPKEPALDNLAKFSRLLPRPRASPAAAASSAGTNRGVLAQRTGDVLPAAAGAPERGRLGRVDSGGSNVSITAGAAETTEGTDERASTGRPIGGHYGPLVGSAAAIEKMDRDMAMKRRREXXXXXXXXXXXXXXAVLPAGRAEEKTNPVQRIMQKYAGTGPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEYT 389
            RRKD R      LDF S  FDPL+AL    ++PPFP     +NLA+++R +   ++ PA   S     +   +QR  ++ P   G   + RL  +  G + V    GA   +      A  G  +GG    +VG     E                                GR  +K   V   MQ     GP  +LYR  EE+ +  V  RR   +R   +G + AFD+HMNL L+DV E YT
Sbjct:    9 RRKDDRS-----LDFLSANFDPLRALYRRDIQPPFPNIQVFNNLAEYARAIKEGKSKPAFRPSE----KPQPSQRARNLKPQFQGLEIQERLQALADGSTKVEGQGGAVLAS------AEGGVCLGGK---VVGGGGLGE--------------------------------GRRWKKPMNVLDKMQA-CSVGPMSILYRCVEERLKLRVWTRRYKGLRSVLSGYLIAFDKHMNLALMDVDEVYT 202          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: A0A3M6VL72_9STRA (Sm domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL72_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.810e-9
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 0
Query:  321 EKTNPVQRIMQKYAGT---GPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEY 388
            EKT+P   + ++ A T   GP+R+L R   E+ +  V+IRRVNSVRGTC G ++AFD+HMNL+L+DV +E+
Sbjct:  170 EKTSP--SLFEQLADTYVDGPFRVLRRCFLERMKVFVVIRRVNSVRGTCFGFLKAFDKHMNLVLLDVMQEF 238          
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Match: G4ZDB3_PHYSP (Sm domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZDB3_PHYSP)

HSP 1 Score: 67.4 bits (163), Expect = 6.280e-9
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 0
Query:  337 GPYRLLYRLHEEKRRASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEY 388
            GP+R+L R   E+ R  V++RRVNSVRGTC+G ++AFD+HMNL+L+DV +E+
Sbjct:  173 GPFRVLRRCFLERMRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQEF 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7567.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0V3_ECTSI1.120e-10454.59Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A6H5LBR8_9PHAE3.480e-9951.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP56_9STRA2.640e-1228.85Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A662WXN3_9STRA3.230e-1054.69Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A5D6YBS7_9STRA9.430e-1046.58Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A3F2RTL9_9STRA1.300e-959.62Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A225WF29_9STRA1.550e-945.45Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
UPI00138FF7D11.690e-930.20uncharacterized protein LOC116603945 n=1 Tax=Nemat... [more]
A0A3M6VL72_9STRA4.810e-950.70Sm domain-containing protein n=2 Tax=Peronospora e... [more]
G4ZDB3_PHYSP6.280e-957.69Sm domain-containing protein (Fragment) n=1 Tax=Ph... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 311..393
e-value: 1.5E-11
score: 46.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..154
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 143..202
coord: 322..391
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 337..389

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7567contigH-canaliculatus_M_contigs7567:789..4929 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7567.1.1mRNA_H-canaliculatus_M_contigs7567.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs7567 789..4929 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs7567.1.1 ID=prot_H-canaliculatus_M_contigs7567.1.1|Name=mRNA_H-canaliculatus_M_contigs7567.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=395bp
MDEPRTSLWSRLVVFYSINKRDQLNPEVMAEIVAKYGSKEKELSARLLKK
YGQPLPPSVLPDDLRRVLTEFGMEDQDSLEGAVGRAREEAAGPAGADPGR
SAAAAAAAAAAAAAPPATRKISDRGQGSQREHPAEVREAGGGRERRKDRR
MRTGSELDFRSKYFDPLKALQHGTLRPPFPKEPALDNLAKFSRLLPRPRA
SPAAAASSAGTNRGVLAQRTGDVLPAAAGAPERGRLGRVDSGGSNVSITA
GAAETTEGTDERASTGRPIGGHYGPLVGSAAAIEKMDRDMAMKRRRETEL
LLATGGGGGSAAVLPAGRAEEKTNPVQRIMQKYAGTGPYRLLYRLHEEKR
RASVMIRRVNSVRGTCTGLIRAFDRHMNLLLVDVHEEYTAFVPAR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR039267Lsm11