mRNA_H-canaliculatus_M_contigs75584.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75584.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75584.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: HAT (dimerization (Fragment) n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4HIX6_ASCIM)

HSP 1 Score: 66.6 bits (161), Expect = 1.970e-12
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   31 ELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSL 237
            EL RYL    L    +S   LDWWFNNR+ YP LY++A    A+P  SA  ERVFS+AG TVT +RN L
Sbjct:    2 ELTRYLSAPRLKGNVNS---LDWWFNNRLKYPSLYKMALDAHAIPPMSAVIERVFSSAGCTVTNRRNRL 67          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Monopterus albus TaxID=43700 RepID=UPI0009B2EA1E)

HSP 1 Score: 67.0 bits (162), Expect = 2.610e-12
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   19 AAGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            A  +EL+ YLQ E LDA       L WW  ++ +YP L  +A  YL +PA+S+SSERVFST GN V+  R+SL  D  N LV
Sbjct:   41 AITFELQSYLQTETLDAEEDP---LKWWKESQRIYPRLSNLARKYLCIPATSSSSERVFSTGGNIVSCLRSSLKPDYVNGLV 119          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: zinc (finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI0014461CE7)

HSP 1 Score: 67.8 bits (164), Expect = 3.100e-12
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   19 AAGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            A   EL+ YLQ  +LD   S +  LDWW  ++ VYP L ++A  YL++PA+SA SERVFST GN VT  R+SL  +S + LV
Sbjct:   81 AVASELQSYLQCADLD---SEENPLDWWREHQRVYPRLSKLAKKYLSIPATSAPSERVFSTGGNIVTCLRSSLKPESVDRLV 159          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: E3 (SUMO-protein ligase ZBED1-like isoform X1 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA5D0)

HSP 1 Score: 69.7 bits (169), Expect = 5.530e-12
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   31 ELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            E+ERYL   N DA  S   +L WW  N+ VYP L  +A  YLA+PASS  SERVFS AG+ V KKR+ L  D  N L+
Sbjct:  353 EIERYL-ASNRDADDSKLSLLQWWEKNQYVYPRLAVLAKKYLAIPASSVPSERVFSLAGSLVNKKRSRLNPDLINKLI 429          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: E3 (SUMO-protein ligase ZBED1-like n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEB19)

HSP 1 Score: 69.7 bits (169), Expect = 5.820e-12
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   31 ELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            E+ERYL   N DA  S   +L WW  N+ VYP L  +A  YLA+PASS  SERVFS AG+ V KKR+ L  D  N L+
Sbjct:  592 EIERYL-ASNRDADDSKLSLLQWWEKNQYVYPRLAVLAKKYLAIPASSVPSERVFSLAGSLVNKKRSRLNPDLINKLI 668          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: E3 (SUMO-protein ligase ZBED1-like n=1 Tax=Perca fluviatilis TaxID=8168 RepID=UPI0019644704)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-11
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   19 AAGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            A   EL  YLQ E LDA       L WW  ++ +YP L  +A  YL +PA+S+SSERVFST+GN VT  R+SL  D  N LV
Sbjct:   46 AIASELHSYLQREILDAEEDP---LKWWTESQRLYPRLSNLARKYLCIPATSSSSERVFSTSGNIVTCLRSSLKPDHVNRLV 124          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=2 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8T5Y0_GYMAC)

HSP 1 Score: 66.2 bits (160), Expect = 1.390e-11
Identity = 42/86 (48.84%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    7 ERKRAAGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            E+ +A   EL+ YLQ   LDA       L WW  +R  YP L  +A  YL +PA+S+SSERVFST GN VT  R+SL  D  N LV
Sbjct:   84 EKDKAIALELQSYLQAVPLDAEEDP---LKWWRESRKFYPRLSILARKYLCIPATSSSSERVFSTGGNIVTCLRSSLKPDHVNRLV 166          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007BACCAA)

HSP 1 Score: 65.9 bits (159), Expect = 2.270e-11
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   31 ELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            EL+ YLQ E LDA       L WW  ++ +YP L  +A  YL +PA+S+SSERVFST GN V+  R+SL  D  N LV
Sbjct:  100 ELQSYLQTETLDAEEDP---LKWWRESQRIYPRLSNLARKYLCIPATSSSSERVFSTGGNIVSCLRSSLKPDHVNRLV 174          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Gouania willdenowi TaxID=441366 RepID=UPI001055FF64)

HSP 1 Score: 67.4 bits (163), Expect = 3.430e-11
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 1
Query:   16 RAAGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV 264
            +A  +EL+ YLQ   LD  +     L+WW  ++  YP L  +A  YL +PA+SASSERVFST GN VT  R+SL  D  N LV
Sbjct:  303 KAIAFELQSYLQAGTLDTEADP---LEWWKVSQKFYPRLSNLARKYLCIPATSASSERVFSTGGNVVTCLRSSLKPDQVNRLV 382          
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QKN7_XIPMA)

HSP 1 Score: 67.4 bits (163), Expect = 3.690e-11
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   22 AGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACIYLAVPASSASSERVFSTAGNTVTKKRNSL 237
            A  E++RYL   N+   SS +  L++W N+R +YP LY++A IYL  PASS   ERVFS AG  V+KKRN L
Sbjct:  408 ATVEVQRYLSEANI---SSLENPLEYWANHRSLYPNLYKLALIYLCTPASSVPCERVFSKAGEVVSKKRNPL 476          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75584.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
HAT1.970e-1253.62dimerization (Fragment) n=1 Tax=Ascobolus immersus... [more]
zinc2.610e-1248.78finger BED domain-containing protein 1-like n=1 Ta... [more]
zinc3.100e-1250.00finger BED domain-containing protein DAYSLEEPER-li... [more]
E35.530e-1252.56SUMO-protein ligase ZBED1-like isoform X1 n=1 Tax=... [more]
E35.820e-1252.56SUMO-protein ligase ZBED1-like n=2 Tax=Mercenaria ... [more]
E31.100e-1150.00SUMO-protein ligase ZBED1-like n=1 Tax=Perca fluvi... [more]
zinc1.390e-1148.84finger BED domain-containing protein 1-like n=2 Ta... [more]
zinc2.270e-1150.00finger BED domain-containing protein 1-like n=1 Ta... [more]
zinc3.430e-1148.19finger BED domain-containing protein 1-like n=1 Ta... [more]
Dimer_Tnp_hAT3.690e-1151.39domain-containing protein n=1 Tax=Xiphophorus macu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75584contigH-canaliculatus_M_contigs75584:255..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6087.XP_004212282.1
PFAMsDimer_Tnp_hAT
Model size264
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-11
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size264
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854093.058253-CDS-H-canaliculatus_M_contigs75584:254..5181696854093.058253-CDS-H-canaliculatus_M_contigs75584:254..518Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75584 255..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75584.1.1prot_H-canaliculatus_M_contigs75584.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75584 255..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75584.1.1

>prot_H-canaliculatus_M_contigs75584.1.1 ID=prot_H-canaliculatus_M_contigs75584.1.1|Name=mRNA_H-canaliculatus_M_contigs75584.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=88bp
LAERKRAAGYELERYLQGENLDATSSSQMVLDWWFNNRMVYPVLYRVACI
YLAVPASSASSERVFSTAGNTVTKKRNSLGTDSGNNLV
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mRNA from alignment at H-canaliculatus_M_contigs75584:255..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75584.1.1 ID=mRNA_H-canaliculatus_M_contigs75584.1.1|Name=mRNA_H-canaliculatus_M_contigs75584.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=264bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75584:255..518- (Hapterophycus canaliculatus Oshoro7m male)
CTGGCCGAGCGCAAGAGGGCAGCCGGGTACGAGCTGGAGCGGTACCTCCA GGGCGAAAACCTTGATGCCACGTCGTCTTCGCAGATGGTTCTGGACTGGT GGTTCAACAACCGGATGGTCTACCCAGTCCTCTACAGGGTGGCGTGTATC TACCTGGCCGTCCCCGCCTCGTCGGCAAGTTCGGAGCGGGTGTTCTCAAC CGCCGGCAACACAGTTACGAAGAAGCGCAATAGTTTGGGTACTGACTCGG GCAACAATTTAGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75584:255..518-

>mRNA_H-canaliculatus_M_contigs75584.1.1 ID=mRNA_H-canaliculatus_M_contigs75584.1.1|Name=mRNA_H-canaliculatus_M_contigs75584.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75584:255..518- (Hapterophycus canaliculatus Oshoro7m male)
CTGGCCGAGCGCAAGAGGGCAGCCGGGTACGAGCTGGAGCGGTACCTCCA
GGGCGAAAACCTTGATGCCACGTCGTCTTCGCAGATGGTTCTGGACTGGT
GGTTCAACAACCGGATGGTCTACCCAGTCCTCTACAGGGTGGCGTGTATC
TACCTGGCCGTCCCCGCCTCGTCGGCAAGTTCGGAGCGGGTGTTCTCAAC
CGCCGGCAACACAGTTACGAAGAAGCGCAATAGTTTGGGTACTGACTCGG
GCAACAATTTAGTA
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