mRNA_H-canaliculatus_M_contigs75423.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75423.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75423.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75423.1.1 vs.
Match: Lipase_3 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.520e-9
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   10 LKTFVGDETEAFGYVGVDASEKRIVVAFKGTSDTRDWV 123
            +++FVG+ T+AFG+VGVD   +RIVVAFKGT+D +DWV
Sbjct:   70 IESFVGEHTDAFGFVGVDTVGERIVVAFKGTTDVQDWV 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75423.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Lipase_39.520e-963.16domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75423contigH-canaliculatus_M_contigs75423:90..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZR8
PFAMsLipase_3
Model size123
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.39e-08
EggNOG OGsKOG4569@1|root,KOG4569@2759|Eukaryota
Descriptionphospholipase A1 activity
Cds size123
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854091.3960023-CDS-H-canaliculatus_M_contigs75423:89..2121696854091.3960023-CDS-H-canaliculatus_M_contigs75423:89..212Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75423 90..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75423.1.1prot_H-canaliculatus_M_contigs75423.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75423 90..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75423.1.1

>prot_H-canaliculatus_M_contigs75423.1.1 ID=prot_H-canaliculatus_M_contigs75423.1.1|Name=mRNA_H-canaliculatus_M_contigs75423.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=41bp
ISHLKTFVGDETEAFGYVGVDASEKRIVVAFKGTSDTRDWV
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mRNA from alignment at H-canaliculatus_M_contigs75423:90..212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75423.1.1 ID=mRNA_H-canaliculatus_M_contigs75423.1.1|Name=mRNA_H-canaliculatus_M_contigs75423.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75423:90..212+ (Hapterophycus canaliculatus Oshoro7m male)
ATCTCCCATCTGAAGACTTTCGTCGGAGATGAGACGGAGGCGTTCGGCTA
CGTCGGGGTCGACGCATCGGAGAAGCGGATCGTCGTGGCCTTCAAGGGCA
CCAGCGACACGCGCGACTGGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75423:90..212+

>mRNA_H-canaliculatus_M_contigs75423.1.1 ID=mRNA_H-canaliculatus_M_contigs75423.1.1|Name=mRNA_H-canaliculatus_M_contigs75423.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=123bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75423:90..212+ (Hapterophycus canaliculatus Oshoro7m male)
ATCTCCCATCTGAAGACTTTCGTCGGAGATGAGACGGAGGCGTTCGGCTA
CGTCGGGGTCGACGCATCGGAGAAGCGGATCGTCGTGGCCTTCAAGGGCA
CCAGCGACACGCGCGACTGGGTG
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