mRNA_H-canaliculatus_M_contigs75043.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs75043.1.1
Unique NamemRNA_H-canaliculatus_M_contigs75043.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs75043.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.780e-14
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 MFPFLLKQHLQNTRADEELDWVSLPDGVVSRVQDDPNPPLFACQVCLGV 147
            ++PFLLKQHLQ+ R D E+DW  LP+G V+R+Q+DPNPPL+ CQ+ + +
Sbjct:  124 LYPFLLKQHLQDERDDAEMDWSRLPEGTVARLQEDPNPPLYCCQIMMEI 172
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BLAST of mRNA_H-canaliculatus_M_contigs75043.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.420e-13
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 MFPFLLKQHLQNTRADEELDWVSLPDGVVSRVQDDPNPPLFACQVCLGV 147
            +FPFLLKQHLQ+ R D E+DW  LP+  V+R+Q+DPNPPL+ CQ+ + +
Sbjct:  221 LFPFLLKQHLQDERNDAEMDWSRLPEITVARLQEDPNPPLYCCQIMMEI 269
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BLAST of mRNA_H-canaliculatus_M_contigs75043.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA7_VAULI)

HSP 1 Score: 58.2 bits (139), Expect = 1.900e-8
Identity = 27/45 (60.00%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    4 FPFLLKQHLQNTRADEELDWVS--LPDGVVSRVQDDPNPPLFACQ 132
            +PFLLKQHLQNTR DEELDW+   LP      +Q +PNPPL   Q
Sbjct:  178 YPFLLKQHLQNTRNDEELDWLKARLPKYEFENIQSNPNPPLLVLQ 222
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BLAST of mRNA_H-canaliculatus_M_contigs75043.1.1 vs.
Match: Bestrophin, (RFP-TM, chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.220e-8
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    4 FPFLLKQHLQNTRADEELDWVSLPDGVVSRVQDDPNPPLFACQ 132
            +P+LLKQHLQ+TR D E  W++LP+  +  +  +PNPPL AC+
Sbjct:  373 YPWLLKQHLQDTRDDTEFKWLALPESELELLLSNPNPPLMACE 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs75043.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized1.780e-1457.14protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.420e-1357.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.900e-860.00protein n=1 Tax=Vaucheria litorea TaxID=109269 Rep... [more]
Bestrophin,9.220e-851.16RFP-TM, chloride channel-domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs75043contigH-canaliculatus_M_contigs75043:274..444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQQ4
PFAMsBestrophin
Model size171
Max annot lvl2759|Eukaryota
KEGG koko:K08994
KEGG TC1.A.46.2
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.91e-15
EggNOG OGs2CY4M@1|root,2S20F@2759|Eukaryota
DescriptionBestrophin, RFP-TM, chloride channel
Cds size171
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854088.301606-CDS-H-canaliculatus_M_contigs75043:273..4441696854088.301606-CDS-H-canaliculatus_M_contigs75043:273..444Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs75043 274..444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs75043.1.1prot_H-canaliculatus_M_contigs75043.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs75043 274..444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs75043.1.1

>prot_H-canaliculatus_M_contigs75043.1.1 ID=prot_H-canaliculatus_M_contigs75043.1.1|Name=mRNA_H-canaliculatus_M_contigs75043.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=57bp
MFPFLLKQHLQNTRADEELDWVSLPDGVVSRVQDDPNPPLFACQVCLGVE
TPPLPPS
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mRNA from alignment at H-canaliculatus_M_contigs75043:274..444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs75043.1.1 ID=mRNA_H-canaliculatus_M_contigs75043.1.1|Name=mRNA_H-canaliculatus_M_contigs75043.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75043:274..444- (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCCCGTTCCTGCTGAAGCAGCACCTGCAAAACACTCGTGCGGACGA
GGAGCTGGACTGGGTCAGCCTTCCGGACGGCGTGGTCTCGAGGGTCCAGG
ACGACCCGAATCCCCCCCTTTTCGCCTGCCAGGTATGCCTTGGTGTGGAA
ACCCCTCCCCTCCCCCCTAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75043:274..444-

>mRNA_H-canaliculatus_M_contigs75043.1.1 ID=mRNA_H-canaliculatus_M_contigs75043.1.1|Name=mRNA_H-canaliculatus_M_contigs75043.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=171bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75043:274..444- (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCCCGTTCCTGCTGAAGCAGCACCTGCAAAACACTCGTGCGGACGA
GGAGCTGGACTGGGTCAGCCTTCCGGACGGCGTGGTCTCGAGGGTCCAGG
ACGACCCGAATCCCCCCCTTTTCGCCTGCCAGGTATGCCTTGGTGTGGAA
ACCCCTCCCCTCCCCCCTAGC
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