mRNA_H-canaliculatus_M_contigs74868.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs74868.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs74868.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Uncharacterized (protein n=72 Tax=root TaxID=1 RepID=A0A873WMU9_9CAUD)

HSP 1 Score: 244 bits (622), Expect = 1.520e-81
Identity = 118/123 (95.93%), Postives = 120/123 (97.56%), Query Frame = 1

Query:    1 VKYLPFVDLSVCRLFVLVVSVVQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            VKYLPFV LSVCRLFVLVVSVVQPELP SR+WC ETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLV+SLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA
Sbjct:   11 VKYLPFVVLSVCRLFVLVVSVVQPELPDSRDWCGETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVASLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 133

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cutibacterium phage FD2 TaxID=2783559 RepID=A0A873WJX3_9CAUD)

HSP 1 Score: 235 bits (600), Expect = 5.150e-78
Identity = 113/123 (91.87%), Postives = 115/123 (93.50%), Query Frame = 1

Query:    1 VKYLPFVDLSVCRLFVLVVSVVQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            VKYLPFVDL VCRLFVLVVSVVQPELP   +WC ETRRWWRVWGEDSRA YVSDEEWLFLMDAAVIHDCVWREGRADLV+SLRAHVKAFMGMLDRYSVDV  GGRGGGSAVAMIDRYRKRKGA
Sbjct:   23 VKYLPFVDLYVCRLFVLVVSVVQPELPEGHDWCGETRRWWRVWGEDSRASYVSDEEWLFLMDAAVIHDCVWREGRADLVASLRAHVKAFMGMLDRYSVDVAYGGRGGGSAVAMIDRYRKRKGA 145

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Terminase (small subunit n=43 Tax=Pahexavirus TaxID=1982251 RepID=K4HP64_9CAUD)

HSP 1 Score: 204 bits (520), Expect = 2.350e-66
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 1

Query:   49 LVVSVVQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            +VVSVVQPELP SR+WC ETRRWWRVWGEDSRAQYVSDEEWLFL+DAAVIHD VWR+GRADLV+SLRAHVKAFMGMLDRYSVDV SGGRG GSAVAMIDRYRKRKGA
Sbjct:    1 MVVSVVQPELPESRDWCGETRRWWRVWGEDSRAQYVSDEEWLFLLDAAVIHDVVWRDGRADLVASLRAHVKAFMGMLDRYSVDVASGGRGNGSAVAMIDRYRKRKGA 107

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Terminase (small subunit n=1 Tax=Cutibacterium phage P107A TaxID=2686222 RepID=A0A6B9L619_9CAUD)

HSP 1 Score: 204 bits (519), Expect = 4.310e-66
Identity = 97/105 (92.38%), Postives = 100/105 (95.24%), Query Frame = 1

Query:   55 VSVVQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            VSVVQPELP SR+WC ETRRWWRVWGEDSRA YVSDEEWLFL+DAAVIHD VWREGRADLV+SLRAHVKAFMGMLDRYSVDV SGGRGGGSAVAMIDRYRKRKGA
Sbjct:   11 VSVVQPELPDSRDWCGETRRWWRVWGEDSRASYVSDEEWLFLLDAAVIHDVVWREGRADLVASLRAHVKAFMGMLDRYSVDVASGGRGGGSAVAMIDRYRKRKGA 115

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Terminase (small subunit n=14 Tax=root TaxID=1 RepID=A0A0H4IRE3_9CAUD)

HSP 1 Score: 200 bits (508), Expect = 1.350e-64
Identity = 94/102 (92.16%), Postives = 98/102 (96.08%), Query Frame = 1

Query:   64 VQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            +QPELP SR+WCEET RWWRVWGED RA +VSDEEWLFLMDAAVIHDCVWREGRADLV+SLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA
Sbjct:    1 MQPELPDSRDWCEETVRWWRVWGEDPRAGFVSDEEWLFLMDAAVIHDCVWREGRADLVASLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 102

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Putative (excinuclease n=9 Tax=root TaxID=1 RepID=T1R5S3_9CAUD)

HSP 1 Score: 199 bits (506), Expect = 4.140e-64
Identity = 95/115 (82.61%), Postives = 102/115 (88.70%), Query Frame = 1

Query:   25 LSVCRLFVLVVSVVQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            +S   +  LVV +VQPELP   EWC ETR WWRVWGED+RAQ+VSDEEWLFL+DAAVIHD VWREGRADLV+SLRAHVKAFMGMLDRYSVDV SGGRGGGSAVAMIDRYRKRKGA
Sbjct:    1 MSTFLVLCLVVLMVQPELPEGHEWCGETRHWWRVWGEDARAQFVSDEEWLFLLDAAVIHDVVWREGRADLVASLRAHVKAFMGMLDRYSVDVASGGRGGGSAVAMIDRYRKRKGA 115

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Terminase (small subunit n=1 Tax=Propionibacterium phage Aquarius TaxID=2041558 RepID=A0A2D1G5I5_9CAUD)

HSP 1 Score: 178 bits (451), Expect = 6.640e-56
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 1

Query:   64 VQPELPGSREWCEETRRWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            +QPELP SR+WC ETR WWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLV+SLRAHVKAFMGML+ +S D  +   G GSAVAMIDRYRKR+GA
Sbjct:    1 MQPELPDSRDWCGETRHWWRVWGEDSRAQYVSDEEWLFLMDAAVIHDCVWREGRADLVASLRAHVKAFMGMLEAHSGDAGTTVGGAGSAVAMIDRYRKRRGA 102

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=A0A4S5J093_9HYPH)

HSP 1 Score: 138 bits (347), Expect = 1.810e-40
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1

Query:  160 DEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            DEEWLFLMDAAVIHDCVWREGRADLV+SLRAHVKAFMGMLDRYSV V SGGRGGGSAVAMIDRYRKRKGA
Sbjct:    1 DEEWLFLMDAAVIHDCVWREGRADLVASLRAHVKAFMGMLDRYSVAVASGGRGGGSAVAMIDRYRKRKGA 70

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: hypothetical (protein n=1 Tax=Cutibacterium acnes TaxID=1747 RepID=UPI001F307B35)

HSP 1 Score: 124 bits (311), Expect = 7.310e-35
Identity = 59/72 (81.94%), Postives = 66/72 (91.67%), Query Frame = 1

Query:  154 VSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            +SDEEWLFL+DAAVIHDCVWREGRADLV+SLRAHVKAFMGML R+SVDV SGGRGGG+A  ++DR  KRKGA
Sbjct:    1 MSDEEWLFLLDAAVIHDCVWREGRADLVASLRAHVKAFMGMLGRFSVDVASGGRGGGAAGGVVDRDGKRKGA 72

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Match: hypothetical (protein n=1 Tax=Cutibacterium acnes TaxID=1747 RepID=UPI001F1C7063)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-23
Identity = 49/72 (68.06%), Postives = 54/72 (75.00%), Query Frame = 1

Query:  154 VSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDVVSGGRGGGSAVAMIDRYRKRKGA 369
            +SDEEWLFL+DAAVIHDCVWR GRA LV+SLRAHV+ FMGML R+SV V S          MIDR RK KGA
Sbjct:    1 MSDEEWLFLLDAAVIHDCVWRGGRAGLVASLRAHVEGFMGMLGRFSVGVGSXXXXXXXXXXMIDRDRKGKGA 72

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs74868.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 17


Match Name	E-value	Identity	Description
Uncharacterized	1.520e-81	95.93	protein n=72 Tax=root TaxID=1 RepID=A0A873WMU9_9CA...	[more]
Uncharacterized	5.150e-78	91.87	protein n=1 Tax=Cutibacterium phage FD2 TaxID=2783...	[more]
Terminase	2.350e-66	90.65	small subunit n=43 Tax=Pahexavirus TaxID=1982251 R...	[more]
Terminase	4.310e-66	92.38	small subunit n=1 Tax=Cutibacterium phage P107A Ta...	[more]
Terminase	1.350e-64	92.16	small subunit n=14 Tax=root TaxID=1 RepID=A0A0H4IR...	[more]
Putative	4.140e-64	82.61	excinuclease n=9 Tax=root TaxID=1 RepID=T1R5S3_9CA...	[more]
Terminase	6.640e-56	82.35	small subunit n=1 Tax=Propionibacterium phage Aqua...	[more]
Uncharacterized	1.810e-40	95.71	protein (Fragment) n=2 Tax=Bacteria TaxID=2 RepID=...	[more]
hypothetical	7.310e-35	81.94	protein n=1 Tax=Cutibacterium acnes TaxID=1747 Rep...	[more]
hypothetical	1.080e-23	68.06	protein n=1 Tax=Cutibacterium acnes TaxID=1747 Rep...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs74868	contig	H-canaliculatus_M_contigs74868:18..389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	504553.F4MIJ2_9CAUD
Model size	372
Max annot lvl	10699\|Siphoviridae
Hectar predicted targeting category	signal peptide
Exons	1
Evalue	2.45e-80
EggNOG OGs	4QDBK@10239\|Viruses,4QWQJ@35237\|dsDNA viruses no RNA stage,4QTXX@28883\|Caudovirales,4QN9X@10699\|Siphoviridae
Cds size	372

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854085.9994538-CDS-H-canaliculatus_M_contigs74868:17..389	1696854085.9994538-CDS-H-canaliculatus_M_contigs74868:17..389	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs74868 18..389 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs74868.1.1	prot_H-canaliculatus_M_contigs74868.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs74868 18..389 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs74868:18..389+
coding sequence from alignment at H-canaliculatus_M_contigs74868:18..389+

protein sequence of mRNA_H-canaliculatus_M_contigs74868.1.1

>prot_H-canaliculatus_M_contigs74868.1.1 ID=prot_H-canaliculatus_M_contigs74868.1.1|Name=mRNA_H-canaliculatus_M_contigs74868.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=124bp
VKYLPFVDLSVCRLFVLVVSVVQPELPGSREWCEETRRWWRVWGEDSRAQ
YVSDEEWLFLMDAAVIHDCVWREGRADLVSSLRAHVKAFMGMLDRYSVDV
VSGGRGGGSAVAMIDRYRKRKGA*

mRNA from alignment at H-canaliculatus_M_contigs74868:18..389+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs74868.1.1 ID=mRNA_H-canaliculatus_M_contigs74868.1.1|Name=mRNA_H-canaliculatus_M_contigs74868.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=372bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74868:18..389+ (Hapterophycus canaliculatus Oshoro7m male)
GTGAAATACCTCCCTTTTGTGGATTTGTCTGTTTGTCGACTTTTTGTGTT
GGTGGTGAGTGTTGTGCAGCCTGAGCTTCCTGGGTCTCGTGAGTGGTGTG
AGGAGACGCGTCGTTGGTGGCGTGTGTGGGGTGAGGATAGTCGCGCGCAG
TATGTGTCTGATGAGGAGTGGTTGTTTCTCATGGATGCTGCGGTGATTCA
TGATTGTGTGTGGCGTGAGGGTCGCGCGGATTTGGTGTCTTCGTTGCGTG
CTCATGTGAAGGCTTTTATGGGTATGTTGGATCGTTATTCGGTTGATGTG
GTGTCTGGTGGCCGTGGTGGGGGTTCTGCGGTGGCGATGATTGACCGGTA
TAGGAAGCGCAAGGGGGCTTGA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74868:18..389+

>mRNA_H-canaliculatus_M_contigs74868.1.1 ID=mRNA_H-canaliculatus_M_contigs74868.1.1|Name=mRNA_H-canaliculatus_M_contigs74868.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74868:18..389+ (Hapterophycus canaliculatus Oshoro7m male)
GTGAAATACCTCCCTTTTGTGGATTTGTCTGTTTGTCGACTTTTTGTGTT
GGTGGTGAGTGTTGTGCAGCCTGAGCTTCCTGGGTCTCGTGAGTGGTGTG
AGGAGACGCGTCGTTGGTGGCGTGTGTGGGGTGAGGATAGTCGCGCGCAG
TATGTGTCTGATGAGGAGTGGTTGTTTCTCATGGATGCTGCGGTGATTCA
TGATTGTGTGTGGCGTGAGGGTCGCGCGGATTTGGTGTCTTCGTTGCGTG
CTCATGTGAAGGCTTTTATGGGTATGTTGGATCGTTATTCGGTTGATGTG
GTGTCTGGTGGCCGTGGTGGGGGTTCTGCGGTGGCGATGATTGACCGGTA
TAGGAAGCGCAAGGGGGCTTGA