mRNA_H-canaliculatus_M_contigs74665.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs74665.1.1
Unique NamemRNA_H-canaliculatus_M_contigs74665.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Lipoyl(octanoyl) (transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY1_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.210e-32
Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   43 RKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDPT 258
            RKC VYNITGG+VPYD+AW+WQQRLLHERMAWQREE +    S+DVL +LEHPPVYTLGRGSSLDHLRFDPT
Sbjct:   73 RKCLVYNITGGSVPYDRAWLWQQRLLHERMAWQREE-YPSQDSYDVLLMLEHPPVYTLGRGSSLDHLRFDPT 143          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Lipoyl(octanoyl) (transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUM8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.570e-19
Identity = 43/75 (57.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   40 RRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASH---DVLHLLEHPPVYTLGRGSSLDHLRFDP 255
            RR+CRVY++    VPY +AW WQQ LL +RMAWQR+   D  + H   D L LLEHP VYTLGRGS+ ++L+FDP
Sbjct:    9 RRRCRVYSVEDRQVPYAEAWAWQQSLLRQRMAWQRQRGGD--SPHYGCDALILLEHPSVYTLGRGSTTENLKFDP 81          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Octanoyltransferase (n=1 Tax=Spirulina sp. DLM2.Bin59 TaxID=2480215 RepID=A0A6P2ARI2_9CYAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.470e-14
Identity = 41/79 (51.90%), Postives = 48/79 (60.76%), Query Frame = 1
Query:   19 PTPAPGQRRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDP 255
            PTP     R C++YN+  G VPY  AW WQ+ LL  R+         H    D+L LLEHPPVYTLG GSSL HL+FDP
Sbjct:    2 PTP-----RNCQLYNL--GCVPYGTAWDWQRSLLEARLT--------HPDLEDLLILLEHPPVYTLGTGSSLAHLKFDP 65          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Lipoyl(Octanoyl) (transferase LipB n=2 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI001684ED1E)

HSP 1 Score: 72.4 bits (176), Expect = 1.320e-13
Identity = 39/74 (52.70%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   37 QRRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDPT 258
            Q+R C  Y +T G VPYD+AW WQ+ L+  R A  R+         DVL LLEHPPVYTLG+GS    L+FDPT
Sbjct:    2 QKRGC--YLVTPGLVPYDRAWQWQRSLVESRRADPRQT--------DVLFLLEHPPVYTLGQGSDPGFLKFDPT 65          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD10_PYTOL)

HSP 1 Score: 72.4 bits (176), Expect = 1.690e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   43 RKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDP 255
            RKC  Y +  G V Y+ AW WQ+ L+ +R+   RE     A  HDV+ LLEHP VYTLGRG++LD+++FDP
Sbjct:   10 RKCVAYRL--GTVEYETAWNWQKELIQQRITASREGC---AIDHDVVLLLEHPTVYTLGRGATLDNVKFDP 75          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Lipoyl(octanoyl) (transferase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XWX3_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 5.870e-13
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   40 RRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDP 255
            +R+C +Y      +PY QAW+WQ+ L+ ER +        H  + D L LL+HPPVYTLG GS+ DHLRFDP
Sbjct:   34 KRRC-IYREYEEPIPYQQAWLWQKDLVAERCS-------GHQPAEDTLLLLQHPPVYTLGAGSTTDHLRFDP 97          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: lipoyl(octanoyl) (transferase LipB n=2 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001686A34D)

HSP 1 Score: 70.9 bits (172), Expect = 6.210e-13
Identity = 39/74 (52.70%), Postives = 46/74 (62.16%), Query Frame = 1
Query:   37 QRRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDPT 258
            QR +C +YN     VPY  AW WQQ L+  R         D+    DVL LLEHPPVYTLG+G+SLD L+FDPT
Sbjct:   16 QRYRCWLYNEA--QVPYSVAWKWQQSLVAARR--------DNPELEDVLILLEHPPVYTLGQGASLDFLKFDPT 79          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Octanoyltransferase (n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QY15_9CYAN)

HSP 1 Score: 70.5 bits (171), Expect = 6.920e-13
Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   43 RKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDP 255
            R C+V+ +  G +PY++ W WQQ L+ ER         ++    DVL LLEHPPVYTLGRG++LD L+FDP
Sbjct:    9 RGCQVWQL--GLLPYERTWQWQQELVAERR--------ENPELEDVLMLLEHPPVYTLGRGATLDFLKFDP 69          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: lipoyl(octanoyl) (transferase LipB n=1 Tax=Oscillatoria sp. PCC 10802 TaxID=1173028 RepID=UPI0005C559DE)

HSP 1 Score: 70.5 bits (171), Expect = 9.040e-13
Identity = 41/81 (50.62%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   10 PTSPTPAPGQRRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFD 252
            PTS       R + R+YN+  G VPY  AW WQQ L+ ER      E        DVL LLEHPPVYTLGRG+SL+ L+FD
Sbjct:    3 PTSAAETGPHRHRGRLYNL--GQVPYTVAWAWQQSLVAERQRAPELE--------DVLMLLEHPPVYTLGRGASLEFLKFD 73          
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Match: Octanoyltransferase (n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A077JCR8_9CYAN)

HSP 1 Score: 70.5 bits (171), Expect = 9.160e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   34 GQRRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREEAHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDPT 258
            GQ+R+C VY   GG +PY+ AW  Q+ L+ ER+        +     D+L LLEHPPVYTLG GSSLD L+FD T
Sbjct:   13 GQQRRCVVYQ--GGIIPYELAWKTQRSLVKERL--------EDPTLEDILLLLEHPPVYTLGTGSSLDFLKFDLT 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs74665.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Lipoyl(octanoyl)1.210e-3281.94transferase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Lipoyl(octanoyl)1.570e-1957.33transferase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Octanoyltransferase3.470e-1451.90n=1 Tax=Spirulina sp. DLM2.Bin59 TaxID=2480215 Rep... [more]
Lipoyl(Octanoyl)1.320e-1352.70transferase LipB n=2 Tax=Oscillatoria sp. FACHB-14... [more]
Uncharacterized1.690e-1350.70protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Lipoyl(octanoyl)5.870e-1348.61transferase n=1 Tax=Trebouxia sp. A1-2 TaxID=26089... [more]
lipoyl(octanoyl)6.210e-1352.70transferase LipB n=2 Tax=unclassified Microcoleus ... [more]
Octanoyltransferase6.920e-1349.30n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A1L9QY15_... [more]
lipoyl(octanoyl)9.040e-1350.62transferase LipB n=1 Tax=Oscillatoria sp. PCC 1080... [more]
Octanoyltransferase9.160e-1350.67n=2 Tax=unclassified Cyanobacteria TaxID=1983111 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs74665contigH-canaliculatus_M_contigs74665:2..259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FUY1
PFAMsBPL_LplA_LipB
Model size258
Max annot lvl2759|Eukaryota
KEGG rclassRC00039,RC00992,RC02867
KEGG koko:K03801
KEGG ReactionR07766,R07769
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-33
EggNOG OGsCOG0321@1|root,KOG0325@2759|Eukaryota
EC2.3.1.181
Descriptionoctanoyl transferase activity (acting on glycine-cleavage complex H protein)
Cds size258
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854084.2225723-CDS-H-canaliculatus_M_contigs74665:1..2591696854084.2225723-CDS-H-canaliculatus_M_contigs74665:1..259Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs74665 2..259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs74665.1.1prot_H-canaliculatus_M_contigs74665.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs74665 2..259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs74665.1.1

>prot_H-canaliculatus_M_contigs74665.1.1 ID=prot_H-canaliculatus_M_contigs74665.1.1|Name=mRNA_H-canaliculatus_M_contigs74665.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=86bp
SSRPTSPTPAPGQRRKCRVYNITGGAVPYDQAWMWQQRLLHERMAWQREE
AHDHAASHDVLHLLEHPPVYTLGRGSSLDHLRFDPT
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mRNA from alignment at H-canaliculatus_M_contigs74665:2..259-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs74665.1.1 ID=mRNA_H-canaliculatus_M_contigs74665.1.1|Name=mRNA_H-canaliculatus_M_contigs74665.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74665:2..259- (Hapterophycus canaliculatus Oshoro7m male)
AGCAGCCGACCAACATCGCCAACACCGGCACCAGGACAACGACGCAAATG TCGCGTGTACAACATCACGGGCGGTGCTGTCCCGTATGATCAGGCGTGGA TGTGGCAGCAGCGTCTGCTCCACGAGCGCATGGCATGGCAACGAGAGGAG GCTCACGACCACGCCGCCTCCCACGATGTCCTGCACCTGCTCGAACACCC CCCAGTCTACACCCTCGGGAGGGGCTCGTCCCTAGATCACCTACGCTTCG ACCCGACA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs74665:2..259-

>mRNA_H-canaliculatus_M_contigs74665.1.1 ID=mRNA_H-canaliculatus_M_contigs74665.1.1|Name=mRNA_H-canaliculatus_M_contigs74665.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs74665:2..259- (Hapterophycus canaliculatus Oshoro7m male)
AGCAGCCGACCAACATCGCCAACACCGGCACCAGGACAACGACGCAAATG
TCGCGTGTACAACATCACGGGCGGTGCTGTCCCGTATGATCAGGCGTGGA
TGTGGCAGCAGCGTCTGCTCCACGAGCGCATGGCATGGCAACGAGAGGAG
GCTCACGACCACGCCGCCTCCCACGATGTCCTGCACCTGCTCGAACACCC
CCCAGTCTACACCCTCGGGAGGGGCTCGTCCCTAGATCACCTACGCTTCG
ACCCGACA
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