mRNA_H-canaliculatus_F_contig10396.406.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10396.406.1
Unique NamemRNA_H-canaliculatus_F_contig10396.406.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10396.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10396contigH-canaliculatus_F_contig10396:194..2475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928680.5409656-CDS-H-canaliculatus_F_contig10396:193..3261622928680.5409656-CDS-H-canaliculatus_F_contig10396:193..326Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10396 194..326 +
1696845523.9922078-CDS-H-canaliculatus_F_contig10396:193..3261696845523.9922078-CDS-H-canaliculatus_F_contig10396:193..326Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10396 194..326 +
1622928680.551962-CDS-H-canaliculatus_F_contig10396:2328..24741622928680.551962-CDS-H-canaliculatus_F_contig10396:2328..2474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10396 2329..2474 +
1696845524.0019245-CDS-H-canaliculatus_F_contig10396:2328..24741696845524.0019245-CDS-H-canaliculatus_F_contig10396:2328..2474Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10396 2329..2474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10396.406.1prot_H-canaliculatus_F_contig10396.406.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10396 194..2474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10396.406.1

>prot_H-canaliculatus_F_contig10396.406.1 ID=prot_H-canaliculatus_F_contig10396.406.1|Name=mRNA_H-canaliculatus_F_contig10396.406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=93bp
GQLEASVSQIPVSAARRLEETHDGGGENGRKIRRRAWRCGLQLAGMFIKK
LTFTVAKHWVNCDQVQDAGRPVGGAAGGVMLKASARLGGGVLR
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mRNA from alignment at H-canaliculatus_F_contig10396:194..2475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10396.406.1 ID=mRNA_H-canaliculatus_F_contig10396.406.1|Name=mRNA_H-canaliculatus_F_contig10396.406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10396:194..2475+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCAGTTGGAGGCCTCGGTATCGCAAATTCCTGTTTCCGCTGCGAGAAG
GCTAGAAGAAACCCATGACGGCGGAGGTGAAAACGGACGCAAGATTCGTC
GACGGGCTTGGCGTTGTGGCCTGCAGCTTGCCGGTGAGTTTCCATCTGTT
TGTTGCCTCGTGCGGCGGATTTGTTTTCCTTGTTTGCAACTTTCGCCTGC
TTACACGTCGGGCGTGAGAAACCAGAGAAGTGCTCGCTTTGTTTCCCCTC
TTTGTCTTCATTACGTTCGCTCTTGGGCGCTGAAAATGATCGACGGCGTT
ATTCAGGGAGCTGGCTCGTTCTTACCAGGGGTGTGCACGGAGTGGAATCC
GCTCCGCAGTTCATTTTTTTTTTATCCCGCGGAGCGGATTTCCACCGCTA
CAAGTATTACGGAGGGGAGCGGATACCCGCCGAGCCAAATATCAAGGACT
ATTGCGGAGCGGATTATCCGTCGCACGGTTTTTTCACGGAGCGGTTTATC
CTGGTCCGTCAGCAATCCGCACAAAACCACGGCATTTTCCCACGGTGCAC
CCTGACAAGTATCCGTGCACCGTGGCAAATATCCGTCGAACTGATACGGT
TAACAGTGGAAATGACACATCCTGGAGTAAATACGATACCAACAAGGTCG
ACAAAGATTTCTTTTTCGCAACCCTGAGGGGCCCACCGCCCAGCACCAAA
GCAGCACGCCCCTCGAGAAAGATGAAAAGAGGACTAATTCATACTTGGAG
TAGTATTGAGCATTTGAAGATTTGATGAGCACAGAGTGTCGAGGGCCGGA
TCAACAGACGCGCAACGCCAACAGCGCCTGACCGGGAACTACAACTTCCC
CTCCTCAGCTCCTGCAGCAGGAGATTGCTGCGCACTTTGTTTGGTAGTGG
AATCCACGGCATCCACCATCAGAGGTCCGCCCACCCGCCGCGGCGCTCGA
AGGGTGCTTTGCACCAAGGGCAAACGTGTTGGTGGGTGAGCGCGTGTCTT
ATGTCCACCGCGGATTGCTCGATGCAGTGCATGATTTGAGAATCGTATTG
ACGTATTTGCTCATCCAAAACAATGATTTCAAAAGTTATGCAGCATTCGG
AACAGTTTCGCTCGAGGAAACACTGGGCTTCGAGCGGTTGAATCCGTGCG
ATTTGCTGTAAAAGTTAGCAACGGAGAATCTACGGAGTGCGTCGAACCGC
TCCGTAGAAAAATCGTTCTTCGCGGTTTCAAGACTGCAGTTGTAATCCAC
ATGGAGCGGAGCGATTTGTTGCGCATTGTCAGGGAGCGGAGTGGAGCGGA
TTTTCGTACGACGGGAAACTCGCGGATTTTCGAGAAGCGGATGTATGCCC
TTCAAAATGTCACGAAGCGGAGCGATTTCTTTTGTGTATTCCGGATCGGA
GCGGAGCGGATGTCCGCCGCTACGAATCTCACGGAGCGGTGCGGTTTGAT
TAAGCCCCTCCGTAAAAGAACCGCACCGCGGAGTAAATCTCACTCCGTAC
ACATCCCTGTTTTTTACGCCCCAAAATATAGCGTTGGCAGTCATGCCGGG
ACTCGTTCTCCATGCAGGGCAGTCAAAGCTCGAGAAAAATGGCGTCGTTT
TCCCCAGTCGTGTTAAGACTTGTGTTGCTTTCTTGTTGTTGCGTTTGACT
TTTGATGGTCGTGGTAGGTGCTGTAAATCATGGTAGTTTCGTTTTTCTAG
GATTCCACACTTGGCTCTGTCTCTCGAGTCGTTTCAACACAGTATAATAC
TGATCATCCTCGCCAACTCAGACCTCAGACAGCTGAACACCTTTTTCGGA
TGCAAACTTAAGAGAGGGTGCCGCCCCTTGGAAGCATCTATTGCGCACGT
ACCCCCAAGCGTTGTTTGTGTGGAAGACCTTCGATGTCTTTGTGGGTGTG
TGTGTTGTTTTGGCTACCCACTTCGTTGAAATGCACACGCTTCTGCTGGT
TGATACAAGGGCAAGTATCACACATGCAAGGCGGTAGAGCTTGGGTGCGG
TGCAAAAAAAAGCACGCACGAGCTGTATGAAGTCCGTAGCCCAAACAAGA
AGAACGGTTCAAACACCCCGTGTCCTGTTCCCTGCCCCTGCCTTGCGCAT
GTGGTGTGGTCGCATCTTCTGACGGCACGGAGAAGGCATGTTTATCAAAA
AGCTGACTTTCACGGTCGCCAAACATTGGGTCAATTGCGATCAAGTGCAA
GATGCTGGGCGTCCTGTTGGCGGTGCAGCCGGTGGTGTAATGTTGAAGGC
CTCTGCGCGCCTAGGCGGCGGAGTGCTTCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10396:194..2475+

>mRNA_H-canaliculatus_F_contig10396.406.1 ID=mRNA_H-canaliculatus_F_contig10396.406.1|Name=mRNA_H-canaliculatus_F_contig10396.406.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=558bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10396:194..2475+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCAGTTGGAGGCCTCGGTATCGCAAATTCCTGTTTCCGCTGCGAGAAG
GCTAGAAGAAACCCATGACGGCGGAGGTGAAAACGGACGCAAGATTCGTC
GACGGGCTTGGCGTTGTGGCCTGCAGCTTGCCGGGGCAGTTGGAGGCCTC
GGTATCGCAAATTCCTGTTTCCGCTGCGAGAAGGCTAGAAGAAACCCATG
ACGGCGGAGGTGAAAACGGACGCAAGATTCGTCGACGGGCTTGGCGTTGT
GGCCTGCAGCTTGCCGGCATGTTTATCAAAAAGCTGACTTTCACGGTCGC
CAAACATTGGGTCAATTGCGATCAAGTGCAAGATGCTGGGCGTCCTGTTG
GCGGTGCAGCCGGTGGTGTAATGTTGAAGGCCTCTGCGCGCCTAGGCGGC
GGAGTGCTTCGTGCATGTTTATCAAAAAGCTGACTTTCACGGTCGCCAAA
CATTGGGTCAATTGCGATCAAGTGCAAGATGCTGGGCGTCCTGTTGGCGG
TGCAGCCGGTGGTGTAATGTTGAAGGCCTCTGCGCGCCTAGGCGGCGGAG
TGCTTCGT
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