mRNA_H-canaliculatus_F_contig15439.4019.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15439.4019.1
Unique NamemRNA_H-canaliculatus_F_contig15439.4019.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A7S3NNH9_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNH9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 EIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            EIGEKTLGP+HP +AT LNN AGLLE+QGKY+EA+ LY R
Sbjct:    1 EIGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYER 40
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A7S3K3F8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3F8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.610e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 EIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            EIGEKTLGP+HP +AT LNN AGLLE+QGKY+EA+ LY R
Sbjct:    1 EIGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYER 40
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A7S3NQ03_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ03_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.340e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 EIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            EIGEKTLGP+HP +AT LNN AGLLE+QGKY+EA+ LY R
Sbjct:    1 EIGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYER 40
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A7S3NN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN98_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.200e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   10 EIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            EIGEKTLGP+HP +AT LNN AGLLE+QGKY+EA+ LY R
Sbjct:    1 EIGEKTLGPNHPDLATRLNNLAGLLENQGKYDEAKLLYER 40
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.590e-10
Identity = 30/39 (76.92%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   13 IGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            I EK LGP HP +AT LNNRAGLLE+QGKY EAEPLY R
Sbjct:   85 IKEKVLGPDHPSLATTLNNRAGLLEAQGKYVEAEPLYER 123
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.030e-9
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 RAIEIGEKTLGPHHPYVATWLNNRAGLLESQGKYN 105
            RAIE+GEK LGP HP +ATWLNN+A LL  QGKY+
Sbjct:   19 RAIEVGEKKLGPDHPDLATWLNNQAVLLRKQGKYD 53
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: UPI001CFC99EF (tetratricopeptide repeat protein n=1 Tax=Microseira wollei TaxID=467598 RepID=UPI001CFC99EF)

HSP 1 Score: 56.2 bits (134), Expect = 1.820e-8
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    4 AIEIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            A+E+ ++ LG  HP VAT LNN AGL +SQG+Y+EAEPLY++
Sbjct:    1 ALELIKRLLGEDHPNVATSLNNLAGLYDSQGRYSEAEPLYLQ 42
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A3M2GEV5_9CYAN (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Cyanobacteria bacterium J007 TaxID=2420339 RepID=A0A3M2GEV5_9CYAN)

HSP 1 Score: 56.6 bits (135), Expect = 3.590e-8
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 RAIEIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYV 126
            RA+++ ++  G  HP VAT LNN AGL ESQG+Y EAEPLY+
Sbjct:  110 RAVQLAQEQWGKEHPNVATSLNNLAGLYESQGRYAEAEPLYL 151
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: A0A256BF49_9CYAN (Uncharacterized protein n=1 Tax=Pseudanabaena sp. SR411 TaxID=1980935 RepID=A0A256BF49_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 4.660e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 RAIEIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVR 129
            R++ I E+ LG  HP VA  LNN A L E+QGKY+EAEPLY+R
Sbjct:    2 RSLSILERQLGADHPSVAASLNNLALLYEAQGKYSEAEPLYLR 44
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BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Match: UPI001031022E (tetratricopeptide repeat protein n=1 Tax=Microcystis aeruginosa TaxID=1126 RepID=UPI001031022E)

HSP 1 Score: 53.5 bits (127), Expect = 8.730e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   19 EKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYV 126
            ++ LG +HP+VAT LNN AGL +SQG+Y EAEPLY+
Sbjct:    2 KRLLGDNHPHVATSLNNLAGLYDSQGRYTEAEPLYL 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15439.4019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NNH9_9STRA2.610e-1175.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3K3F8_9STRA2.610e-1175.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3NQ03_9STRA7.340e-1175.00Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S3NN98_9STRA8.200e-1175.00Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A6H5K0C4_9PHAE3.590e-1076.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM3_ECTSI6.030e-971.43Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
UPI001CFC99EF1.820e-859.52tetratricopeptide repeat protein n=1 Tax=Microseir... [more]
A0A3M2GEV5_9CYAN3.590e-859.52Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
A0A256BF49_9CYAN4.660e-860.47Uncharacterized protein n=1 Tax=Pseudanabaena sp. ... [more]
UPI001031022E8.730e-863.89tetratricopeptide repeat protein n=1 Tax=Microcyst... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15439contigH-canaliculatus_F_contig15439:638..1158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.027998-CDS-H-canaliculatus_F_contig15439:637..7631622929280.027998-CDS-H-canaliculatus_F_contig15439:637..763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 638..763 -
1696845748.580878-CDS-H-canaliculatus_F_contig15439:637..7631696845748.580878-CDS-H-canaliculatus_F_contig15439:637..763Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 638..763 -
1622929280.0485978-CDS-H-canaliculatus_F_contig15439:1065..11581622929280.0485978-CDS-H-canaliculatus_F_contig15439:1065..1158Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 1066..1158 -
1696845748.5910387-CDS-H-canaliculatus_F_contig15439:1065..11581696845748.5910387-CDS-H-canaliculatus_F_contig15439:1065..1158Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15439 1066..1158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15439.4019.1prot_H-canaliculatus_F_contig15439.4019.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15439 638..1158 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15439.4019.1

>prot_H-canaliculatus_F_contig15439.4019.1 ID=prot_H-canaliculatus_F_contig15439.4019.1|Name=mRNA_H-canaliculatus_F_contig15439.4019.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=73bp
RAIEIGEKTLGPHHPYVATWLNNRAGLLESQGKYNEAEPLYVRAIAIGEK
ALGPEHPDLAVWLNNRAGLLKRQ
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mRNA from alignment at H-canaliculatus_F_contig15439:638..1158-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15439.4019.1 ID=mRNA_H-canaliculatus_F_contig15439.4019.1|Name=mRNA_H-canaliculatus_F_contig15439.4019.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=521bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15439:638..1158- (Hapterophycus canaliculatus Oshoro5f female)
CGAGCTATTGAGATTGGGGAGAAGACGCTAGGCCCTCACCACCCTTATGT
GGCTACCTGGCTCAACAACCGGGCGGGGTTGTTGGAGAGCCAGGTGAGAG
CCACTAGAAATTTCTTGGAAAATTCGTAGGGTCTACATTTATCGATGAAC
CGTTTTCGTTTGCAGAGGATCGCTCCCTCACAAGAACCCACTGCTTGCTC
TTCAGGGCAAGTACGAGGAAGCCGAGCCACTGTACAAGCGCTCGCTGGCT
ATTGTTGAGAAGGTGTACGGTCCTGATCACCCTGCAGTGGCAACAGCGCT
CAACAACCGGGCGCGGTTGTTGAGAAAATGTTCCTCCGCATTGCACTATT
CCCACCTTGAGCACACGCCCCTTTTGTCGCCCGCTCGCGTTATAGGGCAA
GTATAACGAGGCGGAGCCGTTGTACGTTAGAGCTATCGCTATCGGAGAGA
AAGCACTGGGCCCAGAGCATCCAGATCTGGCCGTGTGGCTCAACAACCGG
GCGGGGTTGTTGAAGAGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15439:638..1158-

>mRNA_H-canaliculatus_F_contig15439.4019.1 ID=mRNA_H-canaliculatus_F_contig15439.4019.1|Name=mRNA_H-canaliculatus_F_contig15439.4019.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15439:638..1158- (Hapterophycus canaliculatus Oshoro5f female)
CGAGCTATTGAGATTGGGGAGAAGACGCTAGGCCCTCACCACCCTTATGT
GGCTACCTGGCTCAACAACCGGGCGGGGTTGTTGGAGAGCCAGCGAGCTA
TTGAGATTGGGGAGAAGACGCTAGGCCCTCACCACCCTTATGTGGCTACC
TGGCTCAACAACCGGGCGGGGTTGTTGGAGAGCCAGGGCAAGTATAACGA
GGCGGAGCCGTTGTACGTTAGAGCTATCGCTATCGGAGAGAAAGCACTGG
GCCCAGAGCATCCAGATCTGGCCGTGTGGCTCAACAACCGGGCGGGGTTG
TTGAAGAGGCAGGGCAAGTATAACGAGGCGGAGCCGTTGTACGTTAGAGC
TATCGCTATCGGAGAGAAAGCACTGGGCCCAGAGCATCCAGATCTGGCCG
TGTGGCTCAACAACCGGGCGGGGTTGTTGAAGAGGCAG
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