mRNA_H-canaliculatus_F_contig1543.4013.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1543.4013.1
Unique NamemRNA_H-canaliculatus_F_contig1543.4013.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1543.4013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1543contigH-canaliculatus_F_contig1543:6339..6667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000170.1
Exons1
Model size330
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929279.734547-CDS-H-canaliculatus_F_contig1543:6338..66651622929279.734547-CDS-H-canaliculatus_F_contig1543:6338..6665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1543 6339..6665 +
1696845748.4658055-CDS-H-canaliculatus_F_contig1543:6338..66651696845748.4658055-CDS-H-canaliculatus_F_contig1543:6338..6665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1543 6339..6665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1543.4013.1prot_H-canaliculatus_F_contig1543.4013.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1543 6339..6665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1543.4013.1

>prot_H-canaliculatus_F_contig1543.4013.1 ID=prot_H-canaliculatus_F_contig1543.4013.1|Name=mRNA_H-canaliculatus_F_contig1543.4013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
VAPSPGIAAAAPIAPHQPQGLLIAPRQPLATPVAASSIPAPAAAAAAAGG
GVSDAAAGATAKTGLAALLPGKEKPKSGDGGDADKGREEADPANEDGGKD
KMQPPMPRK
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mRNA from alignment at H-canaliculatus_F_contig1543:6339..6667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1543.4013.1 ID=mRNA_H-canaliculatus_F_contig1543.4013.1|Name=mRNA_H-canaliculatus_F_contig1543.4013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=329bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1543:6339..6667+ (Hapterophycus canaliculatus Oshoro5f female)
GTTGCTCCGTCTCCTGGTATCGCTGCTGCTGCGCCTATCGCGCCGCACCA
ACCGCAAGGGCTGCTGATCGCGCCTCGGCAACCCCTGGCGACGCCGGTTG
CGGCGAGCAGCATCCCCGCTCCCGCCGCTGCCGCTGCCGCTGCCGGTGGC
GGTGTTAGCGATGCTGCTGCTGGGGCGACGGCGAAAACGGGTCTGGCCGC
TCTCCTTCCCGGAAAAGAGAAGCCGAAAAGCGGAGATGGTGGAGACGCCG
ACAAGGGACGGGAAGAGGCCGACCCCGCCAACGAGGACGGGGGAAAGGAC
AAGATGCAGCCGCCCATGCCGCGAAAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1543:6339..6667+

>mRNA_H-canaliculatus_F_contig1543.4013.1 ID=mRNA_H-canaliculatus_F_contig1543.4013.1|Name=mRNA_H-canaliculatus_F_contig1543.4013.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1543:6339..6667+ (Hapterophycus canaliculatus Oshoro5f female)
GTTGCTCCGTCTCCTGGTATCGCTGCTGCTGCGCCTATCGCGCCGCACCA
ACCGCAAGGGCTGCTGATCGCGCCTCGGCAACCCCTGGCGACGCCGGTTG
CGGCGAGCAGCATCCCCGCTCCCGCCGCTGCCGCTGCCGCTGCCGGTGGC
GGTGTTAGCGATGCTGCTGCTGGGGCGACGGCGAAAACGGGTCTGGCCGC
TCTCCTTCCCGGAAAAGAGAAGCCGAAAAGCGGAGATGGTGGAGACGCCG
ACAAGGGACGGGAAGAGGCCGACCCCGCCAACGAGGACGGGGGAAAGGAC
AAGATGCAGCCGCCCATGCCGCGAAAGGTTGCTCCGTCTCCTGGTATCGC
TGCTGCTGCGCCTATCGCGCCGCACCAACCGCAAGGGCTGCTGATCGCGC
CTCGGCAACCCCTGGCGACGCCGGTTGCGGCGAGCAGCATCCCCGCTCCC
GCCGCTGCCGCTGCCGCTGCCGGTGGCGGTGTTAGCGATGCTGCTGCTGG
GGCGACGGCGAAAACGGGTCTGGCCGCTCTCCTTCCCGGAAAAGAGAAGC
CGAAAAGCGGAGATGGTGGAGACGCCGACAAGGGACGGGAAGAGGCCGAC
CCCGCCAACGAGGACGGGGGAAAGGACAAGATGCAGCCGCCCATGCCGCG
AAAG
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