mRNA_H-canaliculatus_F_contig154.3991.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig154.3991.1
Unique NamemRNA_H-canaliculatus_F_contig154.3991.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 546 bits (1407), Expect = 3.150e-186
Identity = 288/399 (72.18%), Postives = 314/399 (78.70%), Query Frame = 1 
Query:    1 MRYFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEALYMRCLPQDPLCPTIGAVRDTLTTRLAQAAQRASPMTNLAGCHSTTSATSTVPTRKQESESESEAVERCITEEAEQGGTVRGAVDGKARHAEGALISSSSNKSERRPADALAGAEDLARIARLMVDCARRYLHETPPGPDGESAEPGFCAGEKESLAQARAVPPDENHMVCGYRSSQIERLGLAYGVM 1197
            MRYF+LHKPRGC+TSTVDDT RGRPTVYDVAKAA GVP FGPVGRLDFDTSG LLFTDD+KLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGT+ PEDKGM LL+EPLHF RK DGPGG WTKPAEARVLLTKTF TGQPVPWRFKPGT ATITWIEVVLREGKNRQIRRLCRRSEFELTRLHR+SVGPIVLGD+EEG CREL+R+EVEALY RCLP+DPLCPTI AV+D L +RL+Q A+R      + G        S+     Q+     +  ER   E+AEQ    R A   KAR  E      ++    RR   A A  EDLA I + ++D ARR LHETP GPDGESA P +C GEKESLAQARAVPP+E HMVCGYRSSQIERLGL YG M
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAA-GVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGMDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMDVPQK-----DMPERPTAEDAEQ----RRAA--KARDGERGCPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 7.000e-103
Identity = 182/280 (65.00%), Postives = 200/280 (71.43%), Query Frame = 1 
Query:  358 GCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEALYMRCLPQDPLCPTIGAVRDTLTTRLAQAAQRASPMTNLAGCHSTTSATSTVPTRKQESESESEAVERCITEEAEQGGTVRGAVDGKARHAEGALISSSSNKSERRPADALAGAEDLARIARLMVDCARRYLHETPPGPDGESAEPGFCAGEKESLAQARAVPPDENHMVCGYRSSQIERLGLAYGVM 1197
            G WTKPAEARVLLTKTF TGQPVPWRFKPGT ATITWIEVVLREGKNRQIRRLCRRSEFELTRLHR+SVGPIVLGD+ EG CREL+RREVEALY RCLP+DPLCPTI AV+D L +RLAQ A+R      + G        S+     Q+     +A ER   E+AEQ    R A   K R  E               A A AG EDLA I + ++D +RR LHETP GPDGESA P +C GEKESLAQARAVPP+E HMVCGYRSSQIERLGL YG M
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQK-----DAPERPTREDAEQ----RWAA--KVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDYCPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: A0A6H5L0P5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P5_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 2.040e-53
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:    1 MRYFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMH 309
            MRYF+LHKPRGC+TSTVDDT RGRPTVYDVAKAA GVP FGPVGRLDFDTSG LLFTDD+KLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGT+ PEDKG++
Sbjct:    1 MRYFMLHKPRGCVTSTVDDTGRGRPTVYDVAKAA-GVPNFGPVGRLDFDTSGVLLFTDDYKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTITPEDKGVN 102
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 144 bits (362), Expect = 1.540e-35
Identity = 88/218 (40.37%), Postives = 121/218 (55.50%), Query Frame = 1 
Query:   13 LLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEALYMRCLPQDPL 666
            +++KP GCIT+  DD   GR TVY  A      P  G VGRLD++T G LLFTDD +L +A+ +  + G         +EKVYH+ + G V+  D  +  LEEPL     K GPG   T+PA ARV+  +  T                 +WIE+V+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+L    CR L R EV ALY   L  D L
Sbjct:    1 MMNKPAGCITARTDD--EGRQTVY--AHVPAHFPALGHVGRLDYNTEGLLLFTDDGRLSQALLNKAFSGAP-------VEKVYHVKIKGIVEDGDARLARLEEPL-----KSGPGKT-TEPARARVVERRDKT-----------------SWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: A0A328C9E6_9DELT (Pseudouridine synthase n=9 Tax=Bradymonadales TaxID=1779134 RepID=A0A328C9E6_9DELT)

HSP 1 Score: 134 bits (337), Expect = 3.350e-32
Identity = 87/226 (38.50%), Postives = 127/226 (56.19%), Query Frame = 1 
Query:    1 MRYFLLHKPRGCITSTVDDTERGRPTVYD-VAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAV----GTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEALYMRCLPQDP 663
            M  F+++KP GCIT+ VD  +R  PTVYD V K  E +P    VGRLDF+T G LLFTDD KL +A+ +  Y G  ++      +  +EKVYH+ V   + P+   +  L+EPL +        G +T PA          TTG    W  +    ++ TWI + + EG++RQ+R+LC RS  ++ +L RV +GP+ LG+L+   CREL+  E+  LY+     DP
Sbjct:    1 MPAFIMNKPPGCITARVDFEDR--PTVYDHVPKHFEPLP---HVGRLDFNTEGLLLFTDDGKLAQALLNKDYAGPTSMEETSAELAPIEKVYHVKVKAKLGPDHPVLAALQEPLEY------EPGKFTAPA----------TTG----WVAER---SSCTWISITITEGRHRQVRKLCERSGLQIRKLRRVRLGPLGLGELKLRWCRELTDEELTELYVAAFGHDP 198
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: E6SKM7_THEM7 (Pseudouridine synthase n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) TaxID=644966 RepID=E6SKM7_THEM7)

HSP 1 Score: 131 bits (330), Expect = 5.390e-30
Identity = 96/246 (39.02%), Postives = 134/246 (54.47%), Query Frame = 1 
Query:    4 RYFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEALYMRC-LP--QDPLCPTIGAVRDTLTTRLAQAAQRA 732
            RY +LHKPRG +T+  D   +GRP+V D  + A G+    PVGRLDFD+ G LL TDD +L  A++ P ++          ++KVYH+LV G ++P+   +  L + +      DGP     +   AR+L             R +PG      W+EVVLREG+ RQ+RR+CR   +++ RL RV+VGP+ LG L  G  R LSR+EVEAL     LP   D   P  G     +T+R   A+ RA
Sbjct:   68 RYVMLHKPRGMVTTLRDP--QGRPSVGDFCRRA-GLRGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPLEPQR--LRRLRDGVLLD---DGPA----RARSARIL-------------RPRPGG----GWVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLTAGQWRPLSRQEVEALRAAAGLPIHGDEPAPREGGAAPAITSRWRAASPRA 274
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: A0A7S1FRY8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRY8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.080e-26
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:    7 YFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHF 333
            YF LHKPRGC++ST D+T  GR T+YD      G P  G VGRLDFDTSG +L T+D KL  A++SP +KG A   TV  +EKVY + VAG  +   + + LL+EPLH+
Sbjct:   25 YFALHKPRGCLSSTKDETGLGRLTIYDFVTRC-GFPKVGHVGRLDFDTSGVILLTNDVKLSIALTSPRFKGNADPDTVSPLEKVYLVTVAGYFEENSEAIRLLQEPLHY 132
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: K6NYC6_9FIRM (Pseudouridine synthase n=2 Tax=Thermaerobacter TaxID=73918 RepID=K6NYC6_9FIRM)

HSP 1 Score: 122 bits (305), Expect = 1.250e-26
Identity = 84/221 (38.01%), Postives = 117/221 (52.94%), Query Frame = 1 
Query:    4 RYFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEALYMRC-LPQDP 663
            RY L HKPRG +T+  D   +GRP V D  +   G+    PVGRLDFD+ G LL TDD +L  A++ P ++          ++KVYH+LV G +           +P    R +DG          AR  + +          R +PG      W+EVVLREG+ RQ+RR+C+   +++ RL RV+VGP+ LG L  G  R LSR+EVE+L +   LP  P
Sbjct:   68 RYVLFHKPRGMVTTLRDP--QGRPNVGDFCRR-HGLQGLHPVGRLDFDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGDL-----------DPARLRRLRDG---VLLDDGPARARIARVL--------RPRPGG----GWVEVVLREGRKRQVRRMCQAVGWQVVRLVRVAVGPLRLGRLAAGAWRPLSRQEVESLRVAAGLPPRP 249
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: A0A4P7GUD9_9FIRM (Pseudouridine synthase n=2 Tax=Firmicutes TaxID=1239 RepID=A0A4P7GUD9_9FIRM)

HSP 1 Score: 117 bits (293), Expect = 1.460e-25
Identity = 82/211 (38.86%), Postives = 115/211 (54.50%), Query Frame = 1 
Query:    4 RYFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEAL 636
            RY L HKPRG +T+  D   +GRP+V D  +   G+    PVGRLD D+ G LL TDD +L  A++ P ++          ++KVYH+LV G +  E + +  L + +      DGP     +   AR+L             R +PG      W+EVVLREG+ RQ+RR+CR   +++ RL RV+VGP+ LG L  G  R L+R EV AL
Sbjct:   68 RYVLFHKPRGMVTTLRDP--QGRPSVGDFCRRV-GLAGLHPVGRLDVDSEGLLLLTDDGELTFALTHPRHE----------VDKVYHVLVRGPL--EARRLRRLRDGVLLD---DGPA----RARAARIL-------------RRRPGG----GWVEVVLREGRKRQVRRMCRAVGWDVVRLVRVAVGPLRLGRLAPGRWRPLTRAEVRAL 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Match: UPI0019E4CA9C (rRNA pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E4CA9C)

HSP 1 Score: 111 bits (277), Expect = 8.790e-24
Identity = 73/210 (34.76%), Postives = 109/210 (51.90%), Query Frame = 1 
Query:    7 YFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDTSGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDKGMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGTTATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGCCRELSRREVEAL 636
            Y+LL+KP+GC+T+  D   RGR TV D+ K  +      PVGRLD+DT+G L+ T+D +L  A++ P  +          ++K YH LV G   P ++ +  L E +     +DG     T PA+ RVL  K                    +W+E+++ EGKNRQ++R+C     ++ RL R   GP+ + DL  G  R L   E+EAL
Sbjct:   64 YYLLNKPKGCVTTMKDP--RGRLTVNDLLKDID--ERVYPVGRLDYDTTGVLIITNDGELANALAHPKKE----------IDKYYHALVQGV--PSNEALKRLREGVQL---EDGK----TAPAKIRVLEIK-----------------GNKSWLEIIIHEGKNRQVKRMCEAISHKVLRLKRTRFGPLEVNDLASGKIRALKDGEIEAL 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig154.3991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI3.150e-18672.18Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE7.000e-10365.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0P5_9PHAE2.040e-5389.32PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A838IEP5_9DELT1.540e-3540.37Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
A0A328C9E6_9DELT3.350e-3238.50Pseudouridine synthase n=9 Tax=Bradymonadales TaxI... [more]
E6SKM7_THEM75.390e-3039.02Pseudouridine synthase n=1 Tax=Thermaerobacter mar... [more]
A0A7S1FRY8_9STRA1.080e-2652.29Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
K6NYC6_9FIRM1.250e-2638.01Pseudouridine synthase n=2 Tax=Thermaerobacter Tax... [more]
A0A4P7GUD9_9FIRM1.460e-2538.86Pseudouridine synthase n=2 Tax=Firmicutes TaxID=12... [more]
UPI0019E4CA9C8.790e-2434.76rRNA pseudouridine synthase n=1 Tax=Proteobacteria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig154contigH-canaliculatus_F_contig154:13755..20208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score550.1
Seed ortholog evalue8.8e-154
Seed eggNOG ortholog2880.D7FV84
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs2D5AV@1,2SXY6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_000160.1
Exons7
Model size2426
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig154.3991.1prot_H-canaliculatus_F_contig154.3991.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig154 14981..20208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929276.7312214-UTR-H-canaliculatus_F_contig154:13754..149801622929276.7312214-UTR-H-canaliculatus_F_contig154:13754..14980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 13755..14980 -
1696845746.9039106-UTR-H-canaliculatus_F_contig154:13754..149801696845746.9039106-UTR-H-canaliculatus_F_contig154:13754..14980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig154 13755..14980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929276.7459223-CDS-H-canaliculatus_F_contig154:14980..156501622929276.7459223-CDS-H-canaliculatus_F_contig154:14980..15650Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 14981..15650 -
1696845746.9145405-CDS-H-canaliculatus_F_contig154:14980..156501696845746.9145405-CDS-H-canaliculatus_F_contig154:14980..15650Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 14981..15650 -
1622929276.758824-CDS-H-canaliculatus_F_contig154:16036..160891622929276.758824-CDS-H-canaliculatus_F_contig154:16036..16089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 16037..16089 -
1696845746.9256816-CDS-H-canaliculatus_F_contig154:16036..160891696845746.9256816-CDS-H-canaliculatus_F_contig154:16036..16089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 16037..16089 -
1622929276.7692096-CDS-H-canaliculatus_F_contig154:16541..166601622929276.7692096-CDS-H-canaliculatus_F_contig154:16541..16660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 16542..16660 -
1696845746.9349086-CDS-H-canaliculatus_F_contig154:16541..166601696845746.9349086-CDS-H-canaliculatus_F_contig154:16541..16660Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 16542..16660 -
1622929276.781005-CDS-H-canaliculatus_F_contig154:17023..170781622929276.781005-CDS-H-canaliculatus_F_contig154:17023..17078Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 17024..17078 -
1696845746.9434354-CDS-H-canaliculatus_F_contig154:17023..170781696845746.9434354-CDS-H-canaliculatus_F_contig154:17023..17078Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 17024..17078 -
1622929276.7916603-CDS-H-canaliculatus_F_contig154:19061..191551622929276.7916603-CDS-H-canaliculatus_F_contig154:19061..19155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 19062..19155 -
1696845746.9541674-CDS-H-canaliculatus_F_contig154:19061..191551696845746.9541674-CDS-H-canaliculatus_F_contig154:19061..19155Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 19062..19155 -
1622929276.8052201-CDS-H-canaliculatus_F_contig154:19659..197651622929276.8052201-CDS-H-canaliculatus_F_contig154:19659..19765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 19660..19765 -
1696845746.967045-CDS-H-canaliculatus_F_contig154:19659..197651696845746.967045-CDS-H-canaliculatus_F_contig154:19659..19765Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 19660..19765 -
1622929276.8183286-CDS-H-canaliculatus_F_contig154:20105..202081622929276.8183286-CDS-H-canaliculatus_F_contig154:20105..20208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 20106..20208 -
1696845746.9798758-CDS-H-canaliculatus_F_contig154:20105..202081696845746.9798758-CDS-H-canaliculatus_F_contig154:20105..20208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig154 20106..20208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig154.3991.1

>prot_H-canaliculatus_F_contig154.3991.1 ID=prot_H-canaliculatus_F_contig154.3991.1|Name=mRNA_H-canaliculatus_F_contig154.3991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=400bp
MRYFLLHKPRGCITSTVDDTERGRPTVYDVAKAAEGVPCFGPVGRLDFDT
SGALLFTDDFKLKKAISSPTYKGKAAVGTVPSMEKVYHLLVAGTVKPEDK
GMHLLEEPLHFGRKKDGPGGCWTKPAEARVLLTKTFTTGQPVPWRFKPGT
TATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRVSVGPIVLGDLEEGC
CRELSRREVEALYMRCLPQDPLCPTIGAVRDTLTTRLAQAAQRASPMTNL
AGCHSTTSATSTVPTRKQESESESEAVERCITEEAEQGGTVRGAVDGKAR
HAEGALISSSSNKSERRPADALAGAEDLARIARLMVDCARRYLHETPPGP
DGESAEPGFCAGEKESLAQARAVPPDENHMVCGYRSSQIERLGLAYGVM*
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mRNA from alignment at H-canaliculatus_F_contig154:13755..20208-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig154.3991.1 ID=mRNA_H-canaliculatus_F_contig154.3991.1|Name=mRNA_H-canaliculatus_F_contig154.3991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6454bp|location=Sequence derived from alignment at H-canaliculatus_F_contig154:13755..20208- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTACTTCTTGCTTCATAAACCTCGTGGGTGCATCACAAGCACGGT
TGATGATACTGAGCGTGGCAGGCCTACAGTTTACGACGTCGCCAAGGCTG
CAGGTGATCGAGAGTACAGTAGAGTGGCAGGACTGTCAGAATCTCCCTCT
TCATCTCTCCATCTCCGTCTGCCCTTTGACCCTCTGCGGCTCTCTCGTCT
TCCTCCCAAGGTGCCGGCTGCACGCGTACTGACACGCGCCTACGAGCACC
GCCTCCTCCTTCTGTGAAATTGAAATTAATCCGTTTTCGTTTCAAGTGTC
GGGAAGGTTGCCATCCCTACCCCCTGCTGTCAGGTCTGCCGTCCCCGAGC
TCGTTTGTCCCCTCTTCTTGACGTCTTGACTGATACCGTGGCACACCGCA
TACCGTCGCATGACACACGCTTGCGCGCGCATCTGTTTTGGAGAAGGTGT
CCCCTGCTTTGGCCCTGTCGGCAGGCTTGACTTCGATACTTCAGGCGCAC
TTTTGTTCACGGATGACTTCAAACTGAAGAAAGCCATATCGTCTCCAACG
TGAGCACTTTTTGAATTGTGTTCTGAGACGAAAGAGTACGCACATGTACA
AGCAAGTAGGGAAATGATCGTTCCACAGCAATACTCGGTATGTTACGGAA
TAGCGCACTTCTACTGCATACAACAGGGGCCGAGGATGAAGTGTTTCCTT
TTCGTCGTGTTCAGGGCCTATTCTGGAGACTGCAGTTGCCGTAGTACCCA
TGAAGTGCCACTGCCCCCCCCCCCATGAAACAGACCACAGGGTGTGCAGG
TGTGCACTTCCTTACGCTTTTAGGTTTGTTTGTTGGTTCCATCTCGACAA
ACCAACAGCCGTGGACAGCTTTGAACGGCAGTACCGCCGTAGTCTGGAAT
GCTTTTACATACTCGCACATGACTCCACCGCATGGCACAGCCCAAGGGAT
TTGATTTTCCACGCAGGAAGTACAACATGTCTCGTGCGTGATGTCATGCG
TTCATCGCGTAATCGCTGGTGCCTCTCGTGTTGGCTGTTGGCTCTTGGCG
AAGGTATAAAGGAAAGGCTGCCGTCGGCACGGTACCGTCCATGGAGAAGG
TGTACCATCTTCTCGTGGCCGGGACTGTTAAGCCAGAGGACAAAGGGGTG
AGTCCAAGCTTCTGATACCGGTACTGCGGCAAGCCTCTTACGATACAGAC
CATGCTAGCCCCCGTGTTTTGTGTTTGCGGTAGATTAGAGTCAGGAGCCA
CTGGGAAGATGGCATGCGAGTTTGGCTCGAGATGGGCTGGGCGCTGTGCA
TCAACCGCACGTGACATAGATGCGCAGTACATTTCCCTGCCATCGCCAAG
GACACGACAAGGACATTACTGACTGCACGTGTTGGAAAATGTGAAAGCAC
CCGAAATCACATATGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTC
GTCATCGTCGTCGTTGTTGTTGTTATTGTTGTTGTATTCAAATTAAACTC
GTGACAAGGTTTCTAAACCCCAAGATCTAGCAAAATCACGGTCCGTGGCC
ACAAAAATAAAAAAGAGCCGTTAGAAGATCCAAGATCCAAGATCCATGAA
CACACACAGAAGGAAAAGGGTAGTGCATCCCTACACAGCTGTAGTACACA
AGACAAGACCGCAGAGGTATAACAGTACATCCCTGCAGAAAGTTACTTAC
AAGTACATCCCTGCAGAAAGTCACAACAAGTTGTGTATCCAAACTGAACT
ACACGCGACCGCAATTTCCATTCGACTACAGCAGCAATGCAACCCCCCCG
TTCCCACAGCTAACCAAACGGATATTTGCCGACAACACCAAGGCTAACCG
CTGCTCGAAGTGCTGTCTGCACAATAAATACGTCTTAGGCGTATGGAGCT
GTCAGAATGACAGTCCGCGGACACGCAGTGGAAAATAACAACCAACCAAA
GCCATCATAGCGATCGGCAGTCACCGGAGTCTATCCCGAATCGTCGCGTT
AGGTCAAGCAGGGCAAATATAGACACTGACTAGTAATCGTTCCACATTGA
AGGGTCTTCCACAACGAAGGCACCCGGGGTGGGCGCAGACATCTCTTCCG
CGTCTTTCTGCAAAACCAGTGACGTCGTCACCAAGACCCGACAACGTTCA
GAAAGAACAAACTAATTGCGAACAGATTGCAAACGCATGATGTTTGTCTG
TGCTCCACGGCTCGATGTCGTCCGAATGCTCCGGTGCCGCTGTGGCCATT
CCCATCACGACCACACTCGACCAGTTCCGTACGTACCTCTAAAGATCTCT
TTCCTGTCCTTCCTAGCCGGTTCCTCGCTTCTCCCTCGTTGCCCTCACAT
GTAGGATGCTTGGTCCATGGAAACAAAAATTCTCGCGCCGGAAGGGGTCA
ACCAGCCGTGTCCTCAAGTTCGTCACCACCCGCCTCGAAGGCTCCCTTCC
TTTGATGACGAAGTCAGGATACTGAGACAGCAGCATAGCTCCCTCTAGCA
AACCTAGGGCCGTGCACGCACTTAGTTTCCGTCCACCTTCTTGGTGGCGC
CTGACTCCACGCTTAAAAATGATATGGACGATGGACATCGCTGCCTACGC
TGACGACCATAAAGGCCTGTGCATCTGAGCTTTTGTGCCTGACGCACCAA
GGGCCGACCCAGCTTCACCGCTGCTGCGCACGCCTCTCGGCGGGCGCGCA
GCAGTAGTAAGGTGCGGCAAGGTAAGGTGTCGTTCATTCGCAAGAGGGTG
AGTCTAGCCTTGCTAGCTATGCCAGCTCGAAAGACTCCCCCCTCGCCAAG
GACCGTGTCTAAGCAAAGGCCTTGCCGAGGCAGCGAGGGGAGAATGGCAA
GACTTTAAAATACATGAAGTTACATGAAGTTACACATGAAATAGTGCATA
CACGCGGCAAGATTAGCACACCGTTGCTAATCCGCGTCCCTTTTTCGTTT
TTTGCTTCATTTCAGGGCCATAAGGCGTGAAGCATGAGGCACGCAGCATG
AGGCATGAAATATTATGCATGAGGCTTGAGGTATGACACGCAACAAGTTG
TGGCGCATAGGACGCGAGACATGATACACCGACTCTAACAAGCTCATTTG
TGCCCTCCCTAACGTGGGATATCAATGCAGATGCACCTGCTGGAAGAGCC
TCTACATTTCGGCCGGAAGAAGGATGGGCCAGGTGGTGAGTCTTGCAATA
GTTCTGCTGGTGTCCATTCGTCTGTCTGTTACGATCTCGACCAAACACAT
GCCTAGATTCGGCTCATCTCGCTGAAATATTCAGCGTCACAGCGTCGCAG
GGCGAGCACACACACCGCCACATGCTTTGTGCGGTGTGCGATGTGTTGCA
TAGTCTAATCCATCCAGAATACTGCACGCAGTTTCTCTTGATACCCACCA
AGCAACACGGTGCATCCAACAGCAGCTCCGACATCATTGCCTTATTTTGT
TCCACGTTTGTGTATTTCTGCACCAGCAACGCCCATTCGCGCTACCATAT
TCCTGACACTTTTGCTGCGTTGTTGTGGTGGTGCTCTTACCTTGACAGGG
TGTTGGACGAAGCCGGCGGAGGCGCGCGTCCTTTTGACCAAAACGTTTAC
CACCGGGCAGCCAGTTCCGTGGAGGTTCAAGCCTGGGACGACAGCAACGA
TAACGTGGATCGAAGTGGTGAGAATCGTGCTGTTTGTGTCAGTGCAAACG
TGTCGGTACCTGTAGTCGTATCGAGTTGTTCACCGGACAGTGCTGATTCT
TTCTGCGTGAAACTACAGTATCTCATTTGCGTGTGTAGACTTTTATTTCG
CCCACAATGCACAACGGCTTGTTCGGCGACCAACGGGCGTTTCGGGGTTC
TTCCTGACACTGGTGTTGAAGTCGTTGTTTCCCTCCTGCAAGCTCGACAT
GTTTTGTGTAGGCTGTACTGTAGTTGTCGCTTGCTGCTTTGCTACGCACT
GATGCAAGAGCACGAGCACGATTGCAGCAGGCAGTCCGTACGAAAGCATA
CGACTTGGTACTGGCACCATCCTGTCGTATTGGTTTTGGCGATGGGTTGA
TCTCTTGCGGCATGCGCTGGTTTCTTCGTGCTTTTCCCGCCCCGCTTCTG
TTGAATTTATTTTTGGCAGGTGTTGCGCGAGGGCAAGAATCGGCAGATAA
GGCGCTTATGCCGGCGAAGCGAGTGAGTCGTTGGCGATTTCGTTTTATTT
CATTTCATTTTGCCCTCTTGTCGATCTGTCCCCACAGCAGTGCCTTCAAA
TAATCTGCTCGGGGGGGAAAGCCCGCCAGCATGATGAGGTTGCAGATGAC
CTGAGTTCGTTTACGCCGATAAGCCTTATTGGCAGTCAGCCGTCCGTGAT
TACCGTGAAAGAAAAAGAAATGGTGCTGCGTTCGCGGTCAGGAAGCCGTG
TCCTACCTTGCGCGCTCATGATACCCCATGATACCCTGTGATACCATATG
ATACCCTGAGGTGGCCTTTGTTCTCGAGCACTGCTTCCTCGACACGCCAG
GTGCTGAGGTGCTCCGCCGTGGATTCGTTGCTGCTTCCCTTTCGCTGCGC
ACGTGCAGGTTTGAGTTGACCCGGCTCCACCGAGTGTCCGTCGGTCCTAT
TGTCCTCGGAGACCTCGAGGAGGGCTGCTGCCGGGAGCTAAGCAGGCGGG
AAGTCGAGGCACTCTACATGCGCTGTCTCCCCCAAGACCCGCTGTGCCCC
ACCATAGGGGCCGTTCGAGATACCCTCACCACTCGACTCGCCCAGGCGGC
ACAACGAGCATCTCCCATGACTAATCTTGCAGGTTGTCACTCCACTACAA
GTGCCACCAGCACGGTGCCAACCCGGAAACAAGAGAGCGAGAGCGAGAGT
GAGGCTGTTGAGAGATGCATCACGGAAGAAGCAGAGCAAGGGGGAACTGT
GCGGGGAGCAGTAGACGGGAAAGCAAGGCACGCGGAGGGAGCATTAATAT
CAAGCAGCTCAAATAAATCTGAAAGACGCCCGGCGGATGCATTGGCCGGA
GCGGAGGATCTGGCGCGCATTGCGAGGCTTATGGTGGACTGTGCGCGGCG
TTACTTGCATGAGACCCCGCCAGGCCCTGACGGCGAATCCGCCGAGCCAG
GGTTCTGTGCTGGGGAGAAGGAATCGCTTGCGCAGGCACGAGCGGTCCCG
CCGGACGAAAATCATATGGTTTGCGGCTATCGCTCTTCGCAGATTGAGCG
CCTGGGACTGGCTTACGGTGTTATGTGATAATAGGACAAGCGTAACCATC
AACCAAACTTCTGATTCTGCACCAGCATCTGCTTTTCGTATTGAACACCG
ACCAAAGGCTTGTAGCACGGCGACCTTGCGCCTGCAGCGCATCGTCGTCA
GAAGGCTCTTACACGGCAGCAGAACCTTGGACACATGGACACTAAGAAGT
CACCCTCGGAAGTCGCTTGTCTGTCTTTTGTCGTCTCTCCCCCCTTTCAC
TTCAAGTATGAGATGTTCCTTGTTTCCGGAAGACACTTTTCAGGCGAACG
GGCACGTATATCGGAGCCCAGCGTAGCGACCGGAAGAAAGCATGAAGCAT
GAAGCATGAAGCATGAACCGCGTGTCCGAAACGGGCGAGTGAGGGAGAAG
CCATGAATGATAAGGGACTGACTGATGCGTGATCCACGTGTTCCACGTTG
ACAACGGCATGCCCGTCATGTACATAGATGCGCGTGTTTTCGTTCAGAAC
TTTGCCAATGAGGCGAAAAAGCCTGTTGGTGCAGAAATTCAAGGACGGCG
CGTTCTTCGGTAAAGCGTGAGTCAGCAGCGCTCTTCGATTGACCTTCGAT
TGGCCTTCGATCGACCGCAAAATACAGGTTGGGCATGCCATCGTGTTGTC
GGTGTCGTCATGGTGTTGTCATGGTGTTGTCATAATGTCGTCTTGTTTCG
TGCGAAGTCGGTGGACGCGTCTGCCGGTCTTGTCCACGTCACACTCGGTG
TATGCTCGATTTCGCTGTCCGCGTGGCTGTGCTTCAGCCGTGGTCATTTC
CGAAAAACACAAAAACCGAACCGATGTGCTTCATGTCAAAATCATCAGAC
TTGGTATGTTATACCGAGTACAAGGAAGTTTCAAGTGGACCTGGGATGGT
GCCGCATACCTGGTAGTACACGAGAAGTGCAAGGGACGCGTTACATGCTA
CTTGGAGCACGTCAAATGCGGTGATTGCTGCCGAGAACCGCCCATGACAG
GGAGGCGCGAGATGCTTGCGCTTGGCAAATTGGTGGATGTGGACTTTCAT
CTAACACGTGGCCCACACAAACTGCACGCACATATGAAGGCGGAGAGCGC
GGCCGCTTCCGTGAAGGGGGCTGAGTCGAAGACTTTTAAGTCAGATGAGG
TCTGGGTTCAGGTTGAACTGCCCCTTTGTGGGGCTTTCAAACTTTCTTGC
ACCGCGTGGGTACGTCATGGGTGGGTGGCACCGCGTTGCGCATCTCATTC
TCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig154:13755..20208-

>mRNA_H-canaliculatus_F_contig154.3991.1 ID=mRNA_H-canaliculatus_F_contig154.3991.1|Name=mRNA_H-canaliculatus_F_contig154.3991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2400bp|location=Sequence derived from alignment at H-canaliculatus_F_contig154:13755..20208- (Hapterophycus canaliculatus Oshoro5f female)
ATGCGGTACTTCTTGCTTCATAAACCTCGTGGGTGCATCACAAGCACGGT
TGATGATACTGAGCGTGGCAGGCCTACAGTTTACGACGTCGCCAAGGCTG
CAGATGCGGTACTTCTTGCTTCATAAACCTCGTGGGTGCATCACAAGCAC
GGTTGATGATACTGAGCGTGGCAGGCCTACAGTTTACGACGTCGCCAAGG
CTGCAGAAGGTGTCCCCTGCTTTGGCCCTGTCGGCAGGCTTGACTTCGAT
ACTTCAGGCGCACTTTTGTTCACGGATGACTTCAAACTGAAGAAAGCCAT
ATCGTCTCCAACAAGGTGTCCCCTGCTTTGGCCCTGTCGGCAGGCTTGAC
TTCGATACTTCAGGCGCACTTTTGTTCACGGATGACTTCAAACTGAAGAA
AGCCATATCGTCTCCAACGTATAAAGGAAAGGCTGCCGTCGGCACGGTAC
CGTCCATGGAGAAGGTGTACCATCTTCTCGTGGCCGGGACTGTTAAGCCA
GAGGACAAAGGGGTATAAAGGAAAGGCTGCCGTCGGCACGGTACCGTCCA
TGGAGAAGGTGTACCATCTTCTCGTGGCCGGGACTGTTAAGCCAGAGGAC
AAAGGGATGCACCTGCTGGAAGAGCCTCTACATTTCGGCCGGAAGAAGGA
TGGGCCAGGTGATGCACCTGCTGGAAGAGCCTCTACATTTCGGCCGGAAG
AAGGATGGGCCAGGTGGGTGTTGGACGAAGCCGGCGGAGGCGCGCGTCCT
TTTGACCAAAACGTTTACCACCGGGCAGCCAGTTCCGTGGAGGTTCAAGC
CTGGGACGACAGCAACGATAACGTGGATCGAAGTGGGTGTTGGACGAAGC
CGGCGGAGGCGCGCGTCCTTTTGACCAAAACGTTTACCACCGGGCAGCCA
GTTCCGTGGAGGTTCAAGCCTGGGACGACAGCAACGATAACGTGGATCGA
AGTGGTGTTGCGCGAGGGCAAGAATCGGCAGATAAGGCGCTTATGCCGGC
GAAGCGAGTGTTGCGCGAGGGCAAGAATCGGCAGATAAGGCGCTTATGCC
GGCGAAGCGAGTTTGAGTTGACCCGGCTCCACCGAGTGTCCGTCGGTCCT
ATTGTCCTCGGAGACCTCGAGGAGGGCTGCTGCCGGGAGCTAAGCAGGCG
GGAAGTCGAGGCACTCTACATGCGCTGTCTCCCCCAAGACCCGCTGTGCC
CCACCATAGGGGCCGTTCGAGATACCCTCACCACTCGACTCGCCCAGGCG
GCACAACGAGCATCTCCCATGACTAATCTTGCAGGTTGTCACTCCACTAC
AAGTGCCACCAGCACGGTGCCAACCCGGAAACAAGAGAGCGAGAGCGAGA
GTGAGGCTGTTGAGAGATGCATCACGGAAGAAGCAGAGCAAGGGGGAACT
GTGCGGGGAGCAGTAGACGGGAAAGCAAGGCACGCGGAGGGAGCATTAAT
ATCAAGCAGCTCAAATAAATCTGAAAGACGCCCGGCGGATGCATTGGCCG
GAGCGGAGGATCTGGCGCGCATTGCGAGGCTTATGGTGGACTGTGCGCGG
CGTTACTTGCATGAGACCCCGCCAGGCCCTGACGGCGAATCCGCCGAGCC
AGGGTTCTGTGCTGGGGAGAAGGAATCGCTTGCGCAGGCACGAGCGGTCC
CGCCGGACGAAAATCATATGGTTTGCGGCTATCGCTCTTCGCAGATTGAG
CGCCTGGGACTGGCTTACGGTGTTATGTGAGTTTGAGTTGACCCGGCTCC
ACCGAGTGTCCGTCGGTCCTATTGTCCTCGGAGACCTCGAGGAGGGCTGC
TGCCGGGAGCTAAGCAGGCGGGAAGTCGAGGCACTCTACATGCGCTGTCT
CCCCCAAGACCCGCTGTGCCCCACCATAGGGGCCGTTCGAGATACCCTCA
CCACTCGACTCGCCCAGGCGGCACAACGAGCATCTCCCATGACTAATCTT
GCAGGTTGTCACTCCACTACAAGTGCCACCAGCACGGTGCCAACCCGGAA
ACAAGAGAGCGAGAGCGAGAGTGAGGCTGTTGAGAGATGCATCACGGAAG
AAGCAGAGCAAGGGGGAACTGTGCGGGGAGCAGTAGACGGGAAAGCAAGG
CACGCGGAGGGAGCATTAATATCAAGCAGCTCAAATAAATCTGAAAGACG
CCCGGCGGATGCATTGGCCGGAGCGGAGGATCTGGCGCGCATTGCGAGGC
TTATGGTGGACTGTGCGCGGCGTTACTTGCATGAGACCCCGCCAGGCCCT
GACGGCGAATCCGCCGAGCCAGGGTTCTGTGCTGGGGAGAAGGAATCGCT
TGCGCAGGCACGAGCGGTCCCGCCGGACGAAAATCATATGGTTTGCGGCT
ATCGCTCTTCGCAGATTGAGCGCCTGGGACTGGCTTACGGTGTTATGTGA
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