mRNA_H-canaliculatus_F_contig15387.3981.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15387.3981.1
Unique NamemRNA_H-canaliculatus_F_contig15387.3981.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A6H5J8L5_9PHAE (DUF5117 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L5_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 2.500e-72
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 1
Query:   16 EAAEEAGAEPLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFEIYGDSPE 384
            E A E+G EPLTYY+DPSVP EWREYMR+GVEAWRPAFEAAGLGGEAIRAVLP +E WP DYD GDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFT+GWI+SWSA FEIYGDSP+
Sbjct:  109 EPAAESG-EPLTYYVDPSVPPEWREYMRAGVEAWRPAFEAAGLGGEAIRAVLPGDEAWPSDYDPGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTNGWIKSWSASFEIYGDSPD 230          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: D8LLX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX5_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 2.580e-68
Identity = 108/124 (87.10%), Postives = 114/124 (91.94%), Query Frame = 1
Query:   13 EEAAEEAGAEPLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFEIYGDSPE 384
            E AAE  G EPLTYY+DPSVP EWREYMR+GVEAWRPAFEAAGLGGEAIRAVLP +E WP DYD GDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFT+GWI+SWSA FEIYGDSP+
Sbjct:  105 EPAAE--GGEPLTYYVDPSVPPEWREYMRAGVEAWRPAFEAAGLGGEAIRAVLPGDEAWPSDYDPGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTNGWIKSWSASFEIYGDSPD 226          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A4D9CV01_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV01_9STRA)

HSP 1 Score: 158 bits (400), Expect = 2.090e-42
Identity = 67/116 (57.76%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   46 LTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFEIYGDSPESPS 393
            +TYYIDP+VP +WRE  R GVEAWRPAF+AAG G  AIRA+LP+E  WP+DY  GD+R+++I+W VD+D  FALGP+ +DPR+GEIL S I+FT GW++ W +  E+  DS ++P+
Sbjct:  339 ITYYIDPTVPKQWRESFRQGVEAWRPAFQAAGFGPAAIRAILPNETGWPDDYQVGDLRYSTISWVVDMDTTFALGPSVVDPRSGEILKSDIIFTHGWVKHWISYMEMM-DSSKNPA 453          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A7S3TG22_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TG22_9SPIT)

HSP 1 Score: 149 bits (375), Expect = 3.490e-39
Identity = 72/123 (58.54%), Postives = 87/123 (70.73%), Query Frame = 1
Query:   16 EAAEEAGAE-------PLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFE 363
            + AEE  AE       P+T+YIDPSVP  WR  MR GVEAW PAFE AG   +AIRAVLP E DWPEDY A D+R+ SI+WA+ +D V+A+GP T DPRTGEIL + I+F   WI +W +GFE
Sbjct:  329 DVAEEVAAERLVVPHKPITFYIDPSVPERWRAAMRRGVEAWLPAFEQAGWR-DAIRAVLPGEPDWPEDYSAADMRYASISWAISMDRVYAVGPHTYDPRTGEILDADIMFAHSWIDAWISGFE 450          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A2E5FHL5_9BACT (Uncharacterized protein n=2 Tax=bacterium TaxID=1869227 RepID=A0A2E5FHL5_9BACT)

HSP 1 Score: 144 bits (364), Expect = 1.440e-37
Identity = 58/108 (53.70%), Postives = 85/108 (78.70%), Query Frame = 1
Query:   43 PLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFEI 366
            P+TYY+DP+V  +WREY++ G+E W  +FEAAG  G A++AVLP +EDWP+DY AGD R++S++WA  +   FA+GP+ +DPRTGEIL++ IVFT+ WI++W+   E+
Sbjct:  286 PITYYVDPTVSEDWREYVKIGIEKWNKSFEAAGWKG-AVKAVLPGDEDWPDDYSAGDSRYSSVSWAPSLASTFAIGPSNVDPRTGEILNADIVFTASWIKAWTGDAEV 392          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A1X6P1S5_PORUM (Uncharacterized protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P1S5_PORUM)

HSP 1 Score: 143 bits (360), Expect = 5.240e-37
Identity = 60/113 (53.10%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   43 PLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGF-EIYGDS 378
            P+ Y++DP+VP+ WR+ M+ GVE W  AF+AAG   +A+RA+LPD++ WPEDY AGD+R+NSI+WA  +   +ALGP+ +DPRTGE+L++ IVFT GW+R+W   + E  GD+
Sbjct:  407 PVVYHVDPTVPTAWRQAMKEGVEEWNKAFKAAGHP-DAVRAILPDDDKWPEDYAAGDVRYNSISWAPSLGSTYALGPSDVDPRTGEVLNADIVFTHGWVRAWLRDYREFVGDT 518          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A7J7II70_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7II70_9RHOD)

HSP 1 Score: 136 bits (343), Expect = 1.020e-34
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1
Query:   43 PLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAG--LGGEA----IRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRS 345
            P  YYIDP+VP  WR Y++ GVE WR AFE AG    G A    IRAVLP++ DWP DYD  D+R+N+I+W+     VFALGP+  DPRTGEIL+S I+FT GWIRS
Sbjct:  433 PAVYYIDPTVPRRWRPYLKRGVENWRTAFEQAGWETSGSAQEPPIRAVLPEDADWPSDYDIADVRYNTISWSPSTRSVFALGPSNTDPRTGEILNSNIIFTHGWIRS 539          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: A0A7S3G7R3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G7R3_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 3.420e-34
Identity = 59/114 (51.75%), Postives = 87/114 (76.32%), Query Frame = 1
Query:   43 PLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFEIYGDSPE 384
            P+TY+IDPSVP++WR  ++ GVEAW  AFEA G    A+RA+LP + D+PEDYDAGDIR++SI+W   +   +A+GP+T+DPR+GEI+++ I+FT GW+++  A  ++Y D  E
Sbjct:  281 PITYHIDPSVPAKWRNALKEGVEAWNSAFEAVGFSN-AVRALLPGDADFPEDYDAGDIRYSSISWTPSLYSTYAVGPSTVDPRSGEIINADIMFTEGWVKA--AMSDVYFDDIE 391          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: M1US77_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1US77_CYAM1)

HSP 1 Score: 134 bits (337), Expect = 6.590e-34
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 1
Query:   43 PLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEA------IRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRS 345
            P  +YIDP+VPS WR  ++ GVE W  AF  AG    A      IRAVLP++ DWP DYD GDIRF++I+W+  ++ VFALGP+ IDPRTGEIL+S I+FT GWIRS
Sbjct:  426 PTVFYIDPTVPSRWRLCLKRGVENWNLAFAQAGWNKSAARVEPAIRAVLPEDSDWPSDYDIGDIRFSTISWSPSLNSVFALGPSNIDPRTGEILNSNIIFTHGWIRS 532          
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Match: R1F418_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F418_EMIHU)

HSP 1 Score: 134 bits (336), Expect = 9.000e-34
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   31 AGAEPLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGGEAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGEILHSGIVFTSGWIRSWSAGFE 363
            A A+P+TY+IDPSVP  WR+ M+ GVE W+PAFE AG   +AI AV P +E +PEDY A D R+ SI+WAV  D V+A+GP + DPRTGEIL + I+F   W+ +W  GFE
Sbjct:  394 APAKPITYHIDPSVPERWRKAMKLGVELWQPAFERAGWK-DAIIAVAPGDEGFPEDYSAADSRYASISWAVSTDRVYAVGPHSYDPRTGEILDADIMFAHSWVDAWIRGFE 503          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15387.3981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8L5_9PHAE2.500e-7286.99DUF5117 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LLX5_ECTSI2.580e-6887.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CV01_9STRA2.090e-4257.76Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S3TG22_9SPIT3.490e-3958.54Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2E5FHL5_9BACT1.440e-3753.70Uncharacterized protein n=2 Tax=bacterium TaxID=18... [more]
A0A1X6P1S5_PORUM5.240e-3753.10Uncharacterized protein n=2 Tax=Porphyra umbilical... [more]
A0A7J7II70_9RHOD1.020e-3458.88Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S3G7R3_9EUKA3.420e-3451.75Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
M1US77_CYAM16.590e-3457.94Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
R1F418_EMIHU9.000e-3455.86Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15387contigH-canaliculatus_F_contig15387:606..1739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue3.9e-58
Seed eggNOG ortholog2880.D8LLX5
EggNOG free text desc.Met-zincin
EggNOG OGs2CXMF@1,2RYE2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size393
Cds size393
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.9260266-CDS-H-canaliculatus_F_contig15387:605..7801622929274.9260266-CDS-H-canaliculatus_F_contig15387:605..780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15387 606..780 -
1696845746.3360875-CDS-H-canaliculatus_F_contig15387:605..7801696845746.3360875-CDS-H-canaliculatus_F_contig15387:605..780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15387 606..780 -
1622929274.940656-CDS-H-canaliculatus_F_contig15387:1521..17391622929274.940656-CDS-H-canaliculatus_F_contig15387:1521..1739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15387 1522..1739 -
1696845746.3516524-CDS-H-canaliculatus_F_contig15387:1521..17391696845746.3516524-CDS-H-canaliculatus_F_contig15387:1521..1739Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15387 1522..1739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15387.3981.1prot_H-canaliculatus_F_contig15387.3981.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15387 606..1739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15387.3981.1

>prot_H-canaliculatus_F_contig15387.3981.1 ID=prot_H-canaliculatus_F_contig15387.3981.1|Name=mRNA_H-canaliculatus_F_contig15387.3981.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=131bp
MGEAEEAAEEAGAEPLTYYIDPSVPSEWREYMRSGVEAWRPAFEAAGLGG
EAIRAVLPDEEDWPEDYDAGDIRFNSITWAVDVDEVFALGPATIDPRTGE
ILHSGIVFTSGWIRSWSAGFEIYGDSPESPS
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mRNA from alignment at H-canaliculatus_F_contig15387:606..1739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15387.3981.1 ID=mRNA_H-canaliculatus_F_contig15387.3981.1|Name=mRNA_H-canaliculatus_F_contig15387.3981.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15387:606..1739- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGAAGCAGAGGAAGCAGCCGAAGAGGCCGGGGCCGAGCCCCTGAC CTACTACATTGACCCTTCCGTGCCATCGGAGTGGCGGGAGTACATGAGGT CGGGGGTGGAGGCGTGGAGGCCGGCTTTCGAGGCCGCCGGGTTGGGCGGG GAGGCTATCCGCGCGGTTCTGCCCGACGAAGAGGATTGGCCGGAGGACTA CGACGCCGGGGACATCAGGTGGGCACCCGGCGGAGAGGAGAGAGAGGTTC CTTGGTCGTAAGCAAGCGTGCTGGTTGTTGTTGCTTTTTTTCTTGCTTTT TTGCTTTTTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCCT GCCTGCCTGCCTTGAGGTAGAGTAGAGCCAGCCTAGGTGGAAGAAGAATC CAGTGTTCTTGTGGCGGTGTGGTCGTCTATCTCTTGGTGAAAATTCGCCC ATGAAAACGAGCAGGACTGCAGTGGCGCGGGGGGGGGCAGGGGGGGGGGC AGGGGGAGGCGGCAGCGCCCCGTCTATTCCGTAGAGGATGGGAACACCAA GCTGGTTTCGCAGGCGTCCAACCCCTCGTATGCTCTCGCCGTTTTCTGAT CTCCCGTATCAAAGAGCAGATCCCCCCCTCCTCACCCGTAAACCACGCGT AAATCCCCCCCGTCCCACGGCGTTGTCTTCGGAGCCTAATTTCATCCTTC TTCCTACGCGCACTAGGCGTCCCTCCTTTTGGATGCACGTTAGGCCGCAA CGACGTCCCTGCGCCGAAGCTCTCGCCTCCCACGCGCCGTGCAAAAGTGC TAACCCCGTCAATTCTCAGCCGCTGTTTCTCCAAACCCTTGCCACCCGGC CAGCTCGCTCAACACACCGCCCATCTGTCGCCAAACCCCCGAGTCCAATC CCCGTTTTTGCCGCTTTACCCCAAGCCTTTCCCCACCCCTCCCCTGCTGA CCCGAAAAGGTTCAACTCCATCACGTGGGCGGTCGACGTGGACGAAGTCT TCGCGCTAGGGCCGGCGACGATTGACCCCCGCACCGGGGAGATCCTCCAC AGCGGGATCGTCTTCACAAGCGGGTGGATCAGGTCGTGGTCGGCGGGCTT CGAGATCTACGGAGATTCGCCGGAGTCTCCGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15387:606..1739-

>mRNA_H-canaliculatus_F_contig15387.3981.1 ID=mRNA_H-canaliculatus_F_contig15387.3981.1|Name=mRNA_H-canaliculatus_F_contig15387.3981.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15387:606..1739- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGAAGCAGAGGAAGCAGCCGAAGAGGCCGGGGCCGAGCCCCTGAC
CTACTACATTGACCCTTCCGTGCCATCGGAGTGGCGGGAGTACATGAGGT
CGGGGGTGGAGGCGTGGAGGCCGGCTTTCGAGGCCGCCGGGTTGGGCGGG
GAGGCTATCCGCGCGGTTCTGCCCGACGAAGAGGATTGGCCGGAGGACTA
CGACGCCGGGGACATCAGATGGGAGAAGCAGAGGAAGCAGCCGAAGAGGC
CGGGGCCGAGCCCCTGACCTACTACATTGACCCTTCCGTGCCATCGGAGT
GGCGGGAGTACATGAGGTCGGGGGTGGAGGCGTGGAGGCCGGCTTTCGAG
GCCGCCGGGTTGGGCGGGGAGGCTATCCGCGCGGTTCTGCCCGACGAAGA
GGATTGGCCGGAGGACTACGACGCCGGGGACATCAGGTTCAACTCCATCA
CGTGGGCGGTCGACGTGGACGAAGTCTTCGCGCTAGGGCCGGCGACGATT
GACCCCCGCACCGGGGAGATCCTCCACAGCGGGATCGTCTTCACAAGCGG
GTGGATCAGGTCGTGGTCGGCGGGCTTCGAGATCTACGGAGATTCGCCGG
AGTCTCCGAGCGTTCAACTCCATCACGTGGGCGGTCGACGTGGACGAAGT
CTTCGCGCTAGGGCCGGCGACGATTGACCCCCGCACCGGGGAGATCCTCC
ACAGCGGGATCGTCTTCACAAGCGGGTGGATCAGGTCGTGGTCGGCGGGC
TTCGAGATCTACGGAGATTCGCCGGAGTCTCCGAGC
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