mRNA_H-canaliculatus_F_contig15384.3980.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15384.3980.1
Unique NamemRNA_H-canaliculatus_F_contig15384.3980.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15384.3980.1 vs. uniprot
Match: D8LQA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 8.520e-29
Identity = 106/220 (48.18%), Postives = 125/220 (56.82%), Query Frame = 1 
Query:  130 ADAWEVEVAVAKAMSXXXXXX-----GGGVFVLGAAPQEQTTDEDGV---LSDIAEGHEGQEDQDDEPRIGAFSEGTVGGVGKKHPARSSFTMGMGGSVGPRFPDWSSTGGANGTFPLRRAFT----QSGESPPSSA-AAVGRLKAVPLSESQATTESLRAWRKGLDARLAVSKDDGXXXXXXXXXXXXAMSLQQQTRNYAQLGRATALVMSRTKWASDV 750
            ADAWEVEVAVA    XXXXXX     GG V  L A               L D+ EG +  E Q +E RIG    G+ GG  ++  AR+SF++G  G  G   PDWS  GGANGTFPLRRA T      G  P S A +  GRL+ VPLSE+QA  ESLRAWR+  D R A   + G            A+SLQ Q+R++A+ GRATALV SRTKW SDV
Sbjct:   42 ADAWEVEVAVAXXXXXXXXXXXXXXXGGAVPELSAXXXXXXXXXXXXXXGLEDVPEGTD--EGQKEEARIGKEVVGSGGGKKRRPCARASFSVGGSGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHGPCSPADSGGGRLREVPLSEAQAMAESLRAWRQSFDVRNAFFGESGDGDAEEDRGR--AVSLQVQSRSFARRGRATALVTSRTKWTSDV 257
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BLAST of mRNA_H-canaliculatus_F_contig15384.3980.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.290e-25
Identity = 94/227 (41.41%), Postives = 124/227 (54.63%), Query Frame = 1 
Query:  130 ADAWEVEVAVAKAMSXXXXXXGGGVFVLGAAPQEQTT------DEDGVLSDIAEGHEGQEDQDDEPRIGAFSEGTVGGVGKKHPARSSFTMGMGGSVGPRFPDWSSTGGANGTFPLRRAFT----QSGESPPSSAAAVG-RLKAVPLSESQATTESLRAWRKGLDARLAVSKDDGXXXXXXXXXXXXAMSLQQQTRNYAQLGRATALVMSRTKWASDVGVSGDTAAT 777
            ADA E+EVAVAKA +      GGG+   GA P+          + DG L D+ +G + +E +                    H AR+SF++G  G  G   PDWS  GGANGTFPLRRA T      G SP S A + G RLK VPLSE+QA  ESLRAWR+  D R A    +             A+SLQ+Q+R++A++GRATAL  S+TKW +DV   G+ +++
Sbjct:  348 ADALEMEVAVAKAKAAAVGAAGGGIAG-GAVPELSAXXXXXXXNGDG-LGDVPQGTD-EEQKXXXXXXXXXXXXXXXXXXXXHCARASFSVGESGLAGGGGPDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGARLKEVPLSEAQAMAESLRAWRQSFDVRNASFGGESGDGDAEEDRDR-AVSLQEQSRSFARIGRATALFTSQTKWTTDVVGGGEGSSS 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15384.3980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQA1_ECTSI8.520e-2948.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2B2_9PHAE5.290e-2541.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15384contigH-canaliculatus_F_contig15384:61..1792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005570.1
Exons2
Model size1716
Cds size1356
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15384.3980.1prot_H-canaliculatus_F_contig15384.3980.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15384 391..1762 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.8444374-UTR-H-canaliculatus_F_contig15384:60..3901622929274.8444374-UTR-H-canaliculatus_F_contig15384:60..390Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15384 61..390 -
1696845746.2876432-UTR-H-canaliculatus_F_contig15384:60..3901696845746.2876432-UTR-H-canaliculatus_F_contig15384:60..390Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15384 61..390 -
1622929274.888733-UTR-H-canaliculatus_F_contig15384:1762..17921622929274.888733-UTR-H-canaliculatus_F_contig15384:1762..1792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15384 1763..1792 -
1696845746.3255603-UTR-H-canaliculatus_F_contig15384:1762..17921696845746.3255603-UTR-H-canaliculatus_F_contig15384:1762..1792Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15384 1763..1792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.8633277-CDS-H-canaliculatus_F_contig15384:390..8261622929274.8633277-CDS-H-canaliculatus_F_contig15384:390..826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15384 391..826 -
1696845746.2980752-CDS-H-canaliculatus_F_contig15384:390..8261696845746.2980752-CDS-H-canaliculatus_F_contig15384:390..826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15384 391..826 -
1622929274.8769417-CDS-H-canaliculatus_F_contig15384:842..17621622929274.8769417-CDS-H-canaliculatus_F_contig15384:842..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15384 843..1762 -
1696845746.3085623-CDS-H-canaliculatus_F_contig15384:842..17621696845746.3085623-CDS-H-canaliculatus_F_contig15384:842..1762Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15384 843..1762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15384.3980.1

>prot_H-canaliculatus_F_contig15384.3980.1 ID=prot_H-canaliculatus_F_contig15384.3980.1|Name=mRNA_H-canaliculatus_F_contig15384.3980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=452bp
MEALGLEQEQQELSVAQSNAAAHQEEEEKSERLADAWEVEVAVAKAMSAA
VAAAGGGVFVLGAAPQEQTTDEDGVLSDIAEGHEGQEDQDDEPRIGAFSE
GTVGGVGKKHPARSSFTMGMGGSVGPRFPDWSSTGGANGTFPLRRAFTQS
GESPPSSAAAVGRLKAVPLSESQATTESLRAWRKGLDARLAVSKDDGDGD
GDFEEDRGRAMSLQQQTRNYAQLGRATALVMSRTKWASDVGVSGDTAATA
AAEAPAAAAAVAEAEASGESLSGNGGAVDGRGESGGSGGAVNQEEQEEQR
QQQQQQQKRRRRRREGRSCCEPSATSSGVRREGLPLAWRPRRRAKPLCPQ
TRLWRRSSGRARRLPPGRRSSRRRRWQERRRWSGQRPQRLRARRRRKLAL
SPPPLLGRACPAARPLILPSSSWDSTTPRGRRRRRPRSACAWRRTACQTF
L*
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mRNA from alignment at H-canaliculatus_F_contig15384:61..1792-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15384.3980.1 ID=mRNA_H-canaliculatus_F_contig15384.3980.1|Name=mRNA_H-canaliculatus_F_contig15384.3980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15384:61..1792- (Hapterophycus canaliculatus Oshoro5f female)
GGTGCGGCCACCGCGGCGGAGGTGGCGGGGATGGAAGCGCTAGGGCTGGA
GCAGGAACAGCAGGAGCTCTCCGTCGCGCAGTCCAACGCGGCTGCGCACC
AGGAGGAGGAAGAAAAAAGCGAGCGTCTCGCGGATGCGTGGGAGGTGGAG
GTTGCGGTAGCGAAAGCGATGTCGGCGGCCGTTGCGGCGGCAGGCGGCGG
CGTTTTCGTTCTGGGGGCGGCCCCCCAGGAACAGACGACCGACGAGGACG
GCGTCCTGAGCGACATCGCCGAGGGGCACGAAGGGCAGGAAGACCAGGAC
GATGAGCCCCGCATCGGCGCCTTCTCGGAAGGCACGGTCGGCGGCGTGGG
GAAGAAGCATCCGGCGAGGTCGAGTTTTACTATGGGGATGGGCGGCAGCG
TCGGGCCGCGCTTTCCTGACTGGTCTTCGACGGGAGGCGCCAACGGCACC
TTCCCTCTTCGCCGAGCGTTCACCCAGAGCGGCGAGAGCCCCCCTTCTTC
CGCGGCCGCGGTCGGGCGCTTGAAAGCCGTGCCGTTGTCGGAGTCGCAGG
CCACGACGGAGTCGCTGCGGGCGTGGCGGAAGGGGCTGGACGCGAGACTC
GCCGTCTCGAAGGACGACGGCGACGGCGACGGCGACTTCGAGGAAGACCG
CGGCCGAGCCATGTCGCTGCAGCAGCAAACGCGGAACTATGCCCAGCTGG
GGCGCGCCACGGCGCTGGTCATGTCGCGGACGAAGTGGGCCTCGGACGTT
GGCGTTAGCGGGGACACGGCGGCGACGGCCGCAGCGGAGGCACCGGCGGC
GGCGGCAGCGGTAGCCGAGGCGGAAGCGTCCGGTGAGAGTTTGTCCGGCA
ATGGGGGCGCTGTCGATGGAAGGGGCGAGAGTGGCGGCAGCGGCGGTGCC
GTAAACCAGGAGGAGCAGGAAGAGCAGCGGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAAGAGGAGGAGGAGGAGGAGGGAGGGGAGAAGC
TGTTGCGAACCCTCAGCGACCAGCAGTGGTGTACGTCGCGAAGGTCTTCC
TCTAGCCTGGCGGCCCCGACGAAGAGCGAAGCCTCTCTGCCCTCAAACCC
GGTTATGGCGGCGTTCGAGCGGGCGCGCAAGGAGGCTGCCGCCCGGCAGG
CGGAGCTCGAGGAGGCGCAGGTGGCAAGAGCGTCGGCGATGGTCAGGGCA
GCGGCCGCAGCGGCTTCGGGCGCGAAGGCGGCGGAAACTGGCGCTCAGCC
CACCACCTCTGCTTGGCAGAGCGTGCCCGGCGGCGCGTCCGCTGATCCTT
CCGTCCTCCAGCTGGGACTCAACGACGCCCCGGGGTCGGCGGCGGCGGCG
TCCGCGGTCGGCCTGCGCATGGCGGCGGACGGCGTGTCAAACCTTTCTCT
GAGATCAAAGGACTCCGTGGAAAACTTGCAGGAGCTGGGGGAGCGTTCGT
GGGGGCCGCTTGCCTTGTCCTCGTCGGCGTGAGTGAGCGGACTGTCGGCG
GCCGCGGCTACGGCTCCGCCGTTGGTTGGGCTGACGGACCTGGTGGCGGC
ACCTTCGTTGGAGTTCGGCTGGGTGGAGAATCCACGCGGCGCGTGTGCTG
TTCGCGGTTTCCGGTCGCCTCCGATCTTCTCCCGCCCTTTGTTCTGGGGT
TGGATGTTTGTGCCGCTTCTGTGGCGGCTTACGCACGATATGCGTGTATG
GAGTTGGAATCAAGGAGGCGGCTGAGCGGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15384:61..1792-

>mRNA_H-canaliculatus_F_contig15384.3980.1 ID=mRNA_H-canaliculatus_F_contig15384.3980.1|Name=mRNA_H-canaliculatus_F_contig15384.3980.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2712bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15384:61..1792- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGCGCTAGGGCTGGAGCAGGAACAGCAGGAGCTCTCCGTCGCGCA
GTCCAACGCGGCTGCGCACCAGGAGGAGGAAGAAAAAAGCGAGCGTCTCG
CGGATGCGTGGGAGGTGGAGGTTGCGGTAGCGAAAGCGATGTCGGCGGCC
GTTGCGGCGGCAGGCGGCGGCGTTTTCGTTCTGGGGGCGGCCCCCCAGGA
ACAGACGACCGACGAGGACGGCGTCCTGAGCGACATCGCCGAGGGGCACG
AAGGGCAGGAAGACCAGGACGATGAGCCCCGCATCGGCGCCTTCTCGGAA
GGCACGGTCGGCGGCGTGGGGAAGAAGCATCCGGCGAGGTCGAGTTTTAC
TATGGGGATGGGCGGCAGCGTCGGGCCGCGCTTTCCTGACTGGTCTTCGA
CGGGAGGCGCCAACGGCACCTTCCCTCTTCGCCGAGCGTTCACCCAGAGC
GGCGAGAGCCCCCCTTCTTCCGCGGCCGCGGTCGGGCGCTTGAAAGCCGT
GCCGTTGTCGGAGTCGCAGGCCACGACGGAGTCGCTGCGGGCGTGGCGGA
AGGGGCTGGACGCGAGACTCGCCGTCTCGAAGGACGACGGCGACGGCGAC
GGCGACTTCGAGGAAGACCGCGGCCGAGCCATGTCGCTGCAGCAGCAAAC
GCGGAACTATGCCCAGCTGGGGCGCGCCACGGCGCTGGTCATGTCGCGGA
CGAAGTGGGCCTCGGACGTTGGCGTTAGCGGGGACACGGCGGCGACGGCC
GCAGCGGAGGCACCGGCGGCGGCGGCAGCGGTAGCCGAGGCGGAAGCGTC
CGGTGAGAGTTTGTCCGGCAATGGGGGCGCTGTCGATGGAAGGGGCGAGA
GTGGCGGCAGCGGCGGTGCCGTAAACCAGGAGGAGCAGGAAGAGCAGCGG
CAGCAGCAGCAGCAGCAGCAATGGAAGCGCTAGGGCTGGAGCAGGAACAG
CAGGAGCTCTCCGTCGCGCAGTCCAACGCGGCTGCGCACCAGGAGGAGGA
AGAAAAAAGCGAGCGTCTCGCGGATGCGTGGGAGGTGGAGGTTGCGGTAG
CGAAAGCGATGTCGGCGGCCGTTGCGGCGGCAGGCGGCGGCGTTTTCGTT
CTGGGGGCGGCCCCCCAGGAACAGACGACCGACGAGGACGGCGTCCTGAG
CGACATCGCCGAGGGGCACGAAGGGCAGGAAGACCAGGACGATGAGCCCC
GCATCGGCGCCTTCTCGGAAGGCACGGTCGGCGGCGTGGGGAAGAAGCAT
CCGGCGAGGTCGAGTTTTACTATGGGGATGGGCGGCAGCGTCGGGCCGCG
CTTTCCTGACTGGTCTTCGACGGGAGGCGCCAACGGCACCTTCCCTCTTC
GCCGAGCGTTCACCCAGAGCGGCGAGAGCCCCCCTTCTTCCGCGGCCGCG
GTCGGGCGCTTGAAAGCCGTGCCGTTGTCGGAGTCGCAGGCCACGACGGA
GTCGCTGCGGGCGTGGCGGAAGGGGCTGGACGCGAGACTCGCCGTCTCGA
AGGACGACGGCGACGGCGACGGCGACTTCGAGGAAGACCGCGGCCGAGCC
ATGTCGCTGCAGCAGCAAACGCGGAACTATGCCCAGCTGGGGCGCGCCAC
GGCGCTGGTCATGTCGCGGACGAAGTGGGCCTCGGACGTTGGCGTTAGCG
GGGACACGGCGGCGACGGCCGCAGCGGAGGCACCGGCGGCGGCGGCAGCG
GTAGCCGAGGCGGAAGCGTCCGGTGAGAGTTTGTCCGGCAATGGGGGCGC
TGTCGATGGAAGGGGCGAGAGTGGCGGCAGCGGCGGTGCCGTAAACCAGG
AGGAGCAGGAAGAGCAGCGGCAGCAGCAGCAGCAGCAGCAGAAGAGGAGG
AGGAGGAGGAGGGAGGGGAGAAGCTGTTGCGAACCCTCAGCGACCAGCAG
TGGTGTACGTCGCGAAGGTCTTCCTCTAGCCTGGCGGCCCCGACGAAGAG
CGAAGCCTCTCTGCCCTCAAACCCGGTTATGGCGGCGTTCGAGCGGGCGC
GCAAGGAGGCTGCCGCCCGGCAGGCGGAGCTCGAGGAGGCGCAGGTGGCA
AGAGCGTCGGCGATGGTCAGGGCAGCGGCCGCAGCGGCTTCGGGCGCGAA
GGCGGCGGAAACTGGCGCTCAGCCCACCACCTCTGCTTGGCAGAGCGTGC
CCGGCGGCGCGTCCGCTGATCCTTCCGTCCTCCAGCTGGGACTCAACGAC
GCCCCGGGGTCGGCGGCGGCGGCGTCCGCGGTCGGCCTGCGCATGGCGGC
GGACGGCGTGTCAAACCTTTCTCTGAGAAGAGGAGGAGGAGGAGGAGGGA
GGGGAGAAGCTGTTGCGAACCCTCAGCGACCAGCAGTGGTGTACGTCGCG
AAGGTCTTCCTCTAGCCTGGCGGCCCCGACGAAGAGCGAAGCCTCTCTGC
CCTCAAACCCGGTTATGGCGGCGTTCGAGCGGGCGCGCAAGGAGGCTGCC
GCCCGGCAGGCGGAGCTCGAGGAGGCGCAGGTGGCAAGAGCGTCGGCGAT
GGTCAGGGCAGCGGCCGCAGCGGCTTCGGGCGCGAAGGCGGCGGAAACTG
GCGCTCAGCCCACCACCTCTGCTTGGCAGAGCGTGCCCGGCGGCGCGTCC
GCTGATCCTTCCGTCCTCCAGCTGGGACTCAACGACGCCCCGGGGTCGGC
GGCGGCGGCGTCCGCGGTCGGCCTGCGCATGGCGGCGGACGGCGTGTCAA
ACCTTTCTCTGA
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