mRNA_H-canaliculatus_F_contig15347.3961.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15347.3961.1
Unique NamemRNA_H-canaliculatus_F_contig15347.3961.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15347.3961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15347contigH-canaliculatus_F_contig15347:1216..2072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size857
Cds size627
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15347.3961.1prot_H-canaliculatus_F_contig15347.3961.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15347 1398..2024 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.292646-UTR-H-canaliculatus_F_contig15347:1215..13971622929272.292646-UTR-H-canaliculatus_F_contig15347:1215..1397Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15347 1216..1397 +
1696845745.0509207-UTR-H-canaliculatus_F_contig15347:1215..13971696845745.0509207-UTR-H-canaliculatus_F_contig15347:1215..1397Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15347 1216..1397 +
1622929272.321003-UTR-H-canaliculatus_F_contig15347:2024..20721622929272.321003-UTR-H-canaliculatus_F_contig15347:2024..2072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15347 2025..2072 +
1696845745.068145-UTR-H-canaliculatus_F_contig15347:2024..20721696845745.068145-UTR-H-canaliculatus_F_contig15347:2024..2072Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15347 2025..2072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929272.3064444-CDS-H-canaliculatus_F_contig15347:1397..20241622929272.3064444-CDS-H-canaliculatus_F_contig15347:1397..2024Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15347 1398..2024 +
1696845745.0595744-CDS-H-canaliculatus_F_contig15347:1397..20241696845745.0595744-CDS-H-canaliculatus_F_contig15347:1397..2024Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15347 1398..2024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15347.3961.1

>prot_H-canaliculatus_F_contig15347.3961.1 ID=prot_H-canaliculatus_F_contig15347.3961.1|Name=mRNA_H-canaliculatus_F_contig15347.3961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=209bp
MALWHRGSLPPPLLQLPRPLCALASKHCRQSLAPTPLAPPSSPLPSDLPP
APTPRYHHHRRYRHPPSWWRLLHQPQVGLEWRHGTGLPEWWRARPSRYLE
VHMRLRRRRTQVPRFPAVTVRPHRPSSRTKRHPVAQQSHHHHNHHRRRCR
RCRCRHPRTAPARRGSGGRNPPVWHHHQQVDHRRYRVFQPASPRGKPSRA
ARSSSHWL*
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mRNA from alignment at H-canaliculatus_F_contig15347:1216..2072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15347.3961.1 ID=mRNA_H-canaliculatus_F_contig15347.3961.1|Name=mRNA_H-canaliculatus_F_contig15347.3961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=857bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15347:1216..2072+ (Hapterophycus canaliculatus Oshoro5f female)
ACTCCCTCGCAGTACGTCTCTCCCTCCGAGCAACTGCCGCAGGGCCTTGT
CCTCACGCCTAGCTGTGGTCGTGGCCCTCGGTGCGTCCGTCTCGTTCTCC
CTCGCGTCACTCGTCTTACTTCTAGCTCCGTCACCACCGCCGTCAGTAGC
AGCGCCAACGTGAAAGGCAGAAAGCGGTCGGCATGGCCCTTTGGCATCGC
GGTTCCTTACCACCTCCGCTGCTGCAGCTTCCGCGGCCTCTGTGCGCGCT
CGCCTCGAAGCATTGCCGCCAATCTCTCGCTCCAACTCCCCTGGCTCCCC
CGTCTTCTCCCCTTCCTTCAGACCTCCCGCCAGCTCCCACGCCGAGATAT
CACCACCACCGCCGGTATCGGCACCCTCCCTCTTGGTGGCGTCTGCTGCA
CCAACCACAGGTAGGGCTCGAGTGGCGCCACGGGACTGGACTCCCTGAGT
GGTGGCGAGCTCGTCCCTCCCGCTACCTGGAAGTCCACATGCGGCTGCGA
CGACGGCGGACGCAGGTACCACGCTTTCCTGCGGTGACGGTGCGGCCTCA
TCGACCTTCGTCTCGGACGAAACGTCACCCTGTGGCTCAGCAGTCTCACC
ACCACCACAACCATCACCGCCGCCGCTGCCGCCGCTGCCGCTGCCGACAT
CCCCGCACGGCTCCGGCTCGTCGTGGGTCTGGTGGACGCAATCCACCAGT
TTGGCACCATCACCAGCAAGTGGACCACCGGCGGTACCGCGTGTTTCAGC
CAGCATCACCTCGGGGGAAACCTTCACGAGCGGCGAGGTCAAGCTCACAT
TGGCTTTAGCCTGCGCTGCTCCTGGCGCTGCTGCTGCCGTCGAGGTCCGT
GTCATGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15347:1216..2072+

>mRNA_H-canaliculatus_F_contig15347.3961.1 ID=mRNA_H-canaliculatus_F_contig15347.3961.1|Name=mRNA_H-canaliculatus_F_contig15347.3961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1254bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15347:1216..2072+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCCTTTGGCATCGCGGTTCCTTACCACCTCCGCTGCTGCAGCTTCC
GCGGCCTCTGTGCGCGCTCGCCTCGAAGCATTGCCGCCAATCTCTCGCTC
CAACTCCCCTGGCTCCCCCGTCTTCTCCCCTTCCTTCAGACCTCCCGCCA
GCTCCCACGCCGAGATATCACCACCACCGCCGGTATCGGCACCCTCCCTC
TTGGTGGCGTCTGCTGCACCAACCACAGGTAGGGCTCGAGTGGCGCCACG
GGACTGGACTCCCTGAGTGGTGGCGAGCTCGTCCCTCCCGCTACCTGGAA
GTCCACATGCGGCTGCGACGACGGCGGACGCAGGTACCACGCTTTCCTGC
GGTGACGGTGCGGCCTCATCGACCTTCGTCTCGGACGAAACGTCACCCTG
TGGCTCAGCAGTCTCACCACCACCACAACCATCACCGCCGCCGCTGCCGC
CGCTGCCGCTGCCGACATCCCCGCACGGCTCCGGCTCGTCGTGGGTCTGG
TGGACGCAATCCACCAGTTTGGCACCATCACCAGCAAGTGGACCACCGGC
GGTACCGCGTGTTTCAGCCAGCATCACCTCGGGGGAAACCTTCACGAGCG
GCGAGGTCAAGCTCACATTGGCTTTAGATGGCCCTTTGGCATCGCGGTTC
CTTACCACCTCCGCTGCTGCAGCTTCCGCGGCCTCTGTGCGCGCTCGCCT
CGAAGCATTGCCGCCAATCTCTCGCTCCAACTCCCCTGGCTCCCCCGTCT
TCTCCCCTTCCTTCAGACCTCCCGCCAGCTCCCACGCCGAGATATCACCA
CCACCGCCGGTATCGGCACCCTCCCTCTTGGTGGCGTCTGCTGCACCAAC
CACAGGTAGGGCTCGAGTGGCGCCACGGGACTGGACTCCCTGAGTGGTGG
CGAGCTCGTCCCTCCCGCTACCTGGAAGTCCACATGCGGCTGCGACGACG
GCGGACGCAGGTACCACGCTTTCCTGCGGTGACGGTGCGGCCTCATCGAC
CTTCGTCTCGGACGAAACGTCACCCTGTGGCTCAGCAGTCTCACCACCAC
CACAACCATCACCGCCGCCGCTGCCGCCGCTGCCGCTGCCGACATCCCCG
CACGGCTCCGGCTCGTCGTGGGTCTGGTGGACGCAATCCACCAGTTTGGC
ACCATCACCAGCAAGTGGACCACCGGCGGTACCGCGTGTTTCAGCCAGCA
TCACCTCGGGGGAAACCTTCACGAGCGGCGAGGTCAAGCTCACATTGGCT
TTAG
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