mRNA_H-canaliculatus_F_contig1534.3957.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1534.3957.1
Unique NamemRNA_H-canaliculatus_F_contig1534.3957.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: D7FNQ6_ECTSI (Abhydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ6_ECTSI)

HSP 1 Score: 431 bits (1108), Expect = 2.280e-146
Identity = 217/281 (77.22%), Postives = 246/281 (87.54%), Query Frame = 3 
Query:  261 ITTTAAPASAPAPVSSAGTIEA-GKTQLQIRNEKEGYDLNGVLTVKRENSRSIWVLCHGLCSSSEGMVSRFVSEELDGNTFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVRGEDLTIMKRDFEERAALNMKKTAGAIKRSKVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPEQVEVINALNRYLEPRAELPGV*KR 1100
            +++T+  +SA  P   AG +   GK+QL +RNE+EGYDLNGVLTVKRE+S+S+WVLCHGLCSS EG V  FVS EL  NT+RFDFAGCG+SGG+WRYAGYD+ELGDLRAVVL LRELGW VD VLGHSKGAAAVL+YGE+FDDVPLVVNVAGRFDTS+TP+SRFTEEQW  LE+ GSF+WNVRGEDLTI K DFEERAALNMKKTA +I RSKVLTIHGTEDETIPVADA+EFDKVLPN+ELVVVEGATHRFAT+PEQVEV+ ALNRYLE +AE P   +R
Sbjct:   39 MSSTSTSSSAVQPAGEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELSENTYRFDFAGCGQSGGDWRYAGYDKELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWNQLEETGSFEWNVRGEDLTINKSDFEERAALNMKKTAASITRSKVLTIHGTEDETIPVADAYEFDKVLPNNELVVVEGATHRFATEPEQVEVMKALNRYLE-KAEEPSTAER 318
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A6H5LKM1_9PHAE (Abhydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKM1_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 1.540e-95
Identity = 151/180 (83.89%), Postives = 164/180 (91.11%), Query Frame = 3 
Query:  561 RELGDLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVRGEDLTIMKRDFEERAALNMKKTAGAIKRSKVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPEQVEVINALNRYLEPRAELPGV*KR 1100
            RELGDLRAVVL LR+LGW VD VLGHSKGAAAVL+YGE FDDVPLVVNVAGRFDTS+TP+SRFTEEQW+ LEK GSF+WNVRGEDLTI K DFEERAALNMKKTA +I RSKVLTIHGTEDETIPVADA+EFDKVLPN+ELVVVEGATHRFAT+PEQVEV+ ALNRYLE +AE P   +R
Sbjct:    5 RELGDLRAVVLRLRDLGWNVDCVLGHSKGAAAVLRYGEKFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNVRGEDLTINKSDFEERAALNMKKTAASITRSKVLTIHGTEDETIPVADAYEFDKVLPNNELVVVEGATHRFATEPEQVEVMKALNRYLE-KAEGPSTAER 183
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A835ZJ96_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ96_9STRA)

HSP 1 Score: 241 bits (616), Expect = 4.180e-73
Identity = 124/231 (53.68%), Postives = 153/231 (66.23%), Query Frame = 3 
Query:  339 LQIRNEKEGYDLNGVLTVKRENSRSIWVLCHGLCSSSEGMVSRFVSEELDG-NTFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVRGEDLTIMKRDFEERAALNMKKTAGAIKRSKVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPE 1028
            L+I     GYDL  +L +K   S+ I V+CHGL S     V+  ++E L   N  RFDFAG G SGGEW  +GYDRE+ DLR VV HLR  GWAV  V+GHSKGA AV++Y   +DDVPLVV VAGRFD S+TP SR+TEEQW  L + G+ QW V G   T+ + D +E+AAL+M     AI +SKV  IHG  D+TIPV DAHEF K LP+S L ++EG +H F T  E
Sbjct:   10 LKIPLPDRGYDLAALLDLKNAKSKDIVVVCHGLISDKRRSVAATLAEALQQRNLCRFDFAGNGDSGGEWTLSGYDREMEDLRGVVQHLRGEGWAVTAVVGHSKGACAVIKYAAKYDDVPLVVPVAGRFDMSQTPASRYTEEQWRQLREEGATQWVVGGRSYTVRQADLDEKAALDMAAECAAIHKSKVHIIHGDADDTIPVRDAHEFHKHLPDSTLTIIEGGSHSFRTSAE 240
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A250XCV5_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XCV5_9CHLO)

HSP 1 Score: 167 bits (424), Expect = 1.360e-44
Identity = 95/256 (37.11%), Postives = 149/256 (58.20%), Query Frame = 3 
Query:  324 AGKTQLQIRNEKEGYDLNGVLTVKRENSRSIWVLCHGLCSSSEGMVSRFVSEELDG---NTFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRE-LGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVR---GEDLTIM--KRDFEERAALNMKKTAGAIKRSKVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPEQVEVINALNRYL 1064
            AG T+++ +N K+   +   +  +   S+ + +LCHG  S+ +  +   +++EL G   +T RFDFAG G+S G +++A Y  E+ DLR  VLH+RE L   V  ++GHSKG   VL YG +FDD+P +VNVAGRFD ++    R+ EE    L+K G  +  VR   G  +  M  K+D  ER +++M++    I  ++VLT+HGTED+T+PV DA EF + +   +L +V G  H F +       +  +  Y+
Sbjct:   24 AGGTRVEFQNSKKEKLVGRFIDAR---SQEVVILCHGYASTKDSPIIAHLAKELAGRQLSTLRFDFAGNGESEGVFQFANYMSEVQDLRCAVLHVREVLHKTVTAIVGHSKGGNVVLLYGAAFDDIPFIVNVAGRFDLTRGIVERYGEETIAKLQKLGQVEMEVRTDVGSKVKFMLTKQDLHERQSISMQEACQKITIAEVLTVHGTEDQTVPVEDAQEFSRCIRQHQLQLVNGGDHNFKSPQHAEAAVKKIIAYI 276
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A6U2HVN7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A6U2HVN7_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 1.460e-43
Identity = 88/230 (38.26%), Postives = 135/230 (58.70%), Query Frame = 3 
Query:  405 SRSIWVLCHGLCSSSEGMVSRFVSEELDGN---TFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLR-ELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVRGE-----DLTIMKRDFEERAALNMKKTAGAIKRSKVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPEQVEVINALNRYLE 1067
            S+   VLCHGL SS +  +   ++ EL  +   + RFDF+G G+S G +  +GYD+E+ D+ + V H R ELG  V  + GHSKG   VL Y   +DDVPLVVN+AGRFD ++  + RF E+    LE+ G  + ++  +     D  + KRD  ER A++M K  G I  ++VLT+HG+ED+ IP+ DAH F   +   +L +++GA H F    +    + A+  +++
Sbjct:    2 SKRCVVLCHGLASSKDSALMCALARELSASGLASLRFDFSGNGESQGVFSISGYDKEVADVASAVAHARGELGLEVVAIAGHSKGGTVVLMYSGQYDDVPLVVNIAGRFDCTRGVKERFGEDALAKLERLGQVKLSMTSDFGSTIDFMLTKRDMAERTAMDMGKLCGNITIAEVLTVHGSEDKVIPLEDAHRFQACIRQHQLSIIDGADHNFRGTTQLQAAVRAIVDFIK 231
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A433P8Y5_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P8Y5_9FUNG)

HSP 1 Score: 164 bits (415), Expect = 4.420e-43
Identity = 96/229 (41.92%), Postives = 138/229 (60.26%), Query Frame = 3 
Query:  420 VLCHGLCSSSEGMVSRFVSEELD--GNTFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNV--RGE---DLTIMKRDFEERAALNMKKTAGAIK--RSKVLTIHGTEDETIPVADAHEFDKVLPN-----SELVVVEGATHRFATKPEQVEVINALNRYL 1064
            +L HGL ++    + R ++       +    DF G G SGG+  YA Y  E   LR VVL+ R LG+ V G++GHSKGAAA L Y    +DVPLVVNV+GRFD ++ P  RFT+EQ   +E+ GSF W    RGE   +  + K D EER  L+M   A  I   +++VLT+HG  DET+PV DA  F+++L       +E+V+VEGA H F+++ EQ  ++ A++ ++
Sbjct:   53 LLSHGLLNTRHSRIIRALAGPFIPYASVLSLDFPGNGSSGGQTSYANYHAEAQVLRHVVLYTRSLGYYVAGIVGHSKGAAATLLYAAEHNDVPLVVNVSGRFDHTRAPAIRFTKEQKREMEEKGSFVWKTYGRGEYVREYIVRKEDMEERKKLDMAAAARRIDTGKTRVLTVHGKADETVPVEDAWGFERILNAGGVQCNEVVLVEGAGHSFSSEEEQKGLVEAVSEWI 281
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A1Y1YDC5_9FUNG (Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDC5_9FUNG)

HSP 1 Score: 162 bits (410), Expect = 1.290e-42
Identity = 97/247 (39.27%), Postives = 140/247 (56.68%), Query Frame = 3 
Query:  360 EGYDLNGVLTVKREN-SRSIWVLCHGLCSSSEGMVSRFVSEELDGNTFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRE-LGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQW-----NVRGEDLTIMKRDFEERAALNMKKTAGAIK-RSKVLTIHGTEDETIPVADAHEFDKVL---PNSELVVVEGATHRFATKPEQVEVINALNRYLE 1067
            +G  L+ VLT K    +  + VLCHG  + S   + R ++ +L  N    DF G G S G  RY  Y  E+ DL+ +V HLRE L   V G+LGHSKGA+ VL Y  S  +VPL++NVAGR+D S+ P  RFT  Q + LE+ GSF W     N   +D  + + D  ++   +M       + R +VL++HG +D TIPV + H +D+VL   P  E+ V++GATH F    EQ ++   +N ++E
Sbjct:   18 QGISLSAVLTKKSTAPADQVLVLCHGFLNHSNSTIIRGLTNQLPFNVCAIDFRGNGFSKGTTRYGNYLEEVEDLKYLVEHLREELHLNVLGILGHSKGASVVLLYASSHHEVPLIINVAGRYDMSELPMHRFTPGQRKELEERGSFVWRKYLHNTEEKDFVVSQEDLTKKKNTDMSVVRNIDRERVRVLSVHGEDDTTIPVQEVHMYDEVLGPKPYHEVAVIKGATHFFRAPEEQQQLGKVVNDWIE 264
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A433QCX3_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QCX3_9FUNG)

HSP 1 Score: 160 bits (405), Expect = 1.320e-41
Identity = 94/233 (40.34%), Postives = 131/233 (56.22%), Query Frame = 3 
Query:  414 IWVLCHGLCSSSEGMVSRFVSEELDGNT--FRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVRGEDLT----IMKRDFEERAALNMKKTAGAIK-RSKVLTIHGTEDETIPVADAHEFDKVLPNS---------ELVVVEGATHRFATKPEQVEVINALNRYL 1064
            ++VLCHGL ++    + R ++  L   T    FDF G G S G   Y  Y+ E+  L  VVLH R LG+ V G+ GHSKGAA VL Y   + DVPLVVN+A R+D ++ P  RFT +Q   LE+ GSF W   G D+     + K D E R  ++M   A   + R++VLT+HG+ DE +PV DA+ F+ +L            ELV+VEGA H F +  EQ  +  A+  ++
Sbjct:   54 LFVLCHGLLNARYSRIVRTMATALLPTTSVLVFDFQGNGSSTGTTNYGNYEDEVHALHHVVLHTRSLGYRVVGIAGHSKGAADVLLYASQYGDVPLVVNIAARYDHTQAPIDRFTADQRRELEEKGSFVWLTYGWDVVREYVVRKEDLERRTTMDMSGVARIDRTRTRVLTVHGSADEIVPVKDAYAFEGMLNEGGPDGKVKCHELVIVEGAGHSFVSAEEQEGLAKAMGEFV 286
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A1Y1II24_KLENI (Esterase/lipase/thioesterase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1II24_KLENI)

HSP 1 Score: 156 bits (395), Expect = 1.150e-40
Identity = 96/244 (39.34%), Postives = 144/244 (59.02%), Query Frame = 3 
Query:  339 LQIRNEKEGYDLNGVLTVKRENSRSIWVLCHGLCSSSEGMVSRFVSE---ELDGNTFRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRELGW-AVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLEKNGSFQWNVRGE----DLTIMKRDFEERAALNMKKTAGAIKRS-KVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPEQVEVI 1043
            ++I N KE   L GVL    +    + +LCHG  SS      + +     E      RFDF+G G+SGGE+ +  Y +E+ DLR+VV  +R +   +V  VLGHSKG   V+ Y   + DVP+VVNV+GRFD S+  + RF +E   ++ ++G   W+V+      +  + K+  EER  ++++K A  I+++ +VLT+HGT DETIPV D   FDKV+ N  LV+VEGA HR++   E ++ I
Sbjct:   11 IEIAN-KEDEKLAGVLEGPPDGD--VVILCHGFLSSKRSSTLQTIVPGLVEAGFGVLRFDFSGNGESGGEFEFGNYWKEVEDLRSVVGFVRGVKKRSVKAVLGHSKGGDVVILYAAKYGDVPIVVNVSGRFDLSRGVEERFGKEGLAAIAEHGY--WDVKDSQGAVNYRVTKKSLEERLCISIEKAARTIQKNVRVLTVHGTADETIPVDDGRSFDKVIANHALVLVEGADHRYSRHREDLQQI 249
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BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Match: A0A2P6Q1B3_ROSCH (Putative feruloyl esterase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q1B3_ROSCH)

HSP 1 Score: 156 bits (395), Expect = 2.640e-40
Identity = 95/251 (37.85%), Postives = 144/251 (57.37%), Query Frame = 3 
Query:  330 KTQLQIRNEKEGYDLNGVLTVKRENSRSIWVLCHGLCSSSEG--MVSRFVSEELDGNT-FRFDFAGCGKSGGEWRYAGYDRELGDLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFDTSKTPQSRFTEEQWESLE---------KNGSFQWNVRGEDLTIMKRDFEERAALNMKKTAGAIKRS-KVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATKPEQVEVI 1043
            K ++ I N   G  L G+L      S+ + V CHG+ SS E   MV+   + E+ G + FRFDFAG G+S G +RY  Y RE  DLRAVV H     + +  ++GHSKG  AV+ YG  + DVPLVVN++GRF+  +    R  ++  + ++         K G+FQ+ V  E L        ER  ++M+    +I ++ +VLT+HG+ D+ +PV DA+EF+K++PN +L +VEGA H F +   ++  I
Sbjct:   15 KRRVVIENS-HGEKLVGIL--HDTGSKELVVFCHGIHSSKERIPMVNLAAALEIQGTSAFRFDFAGNGESEGSFRYGNYRREADDLRAVVQHFLGCHYVITAIVGHSKGGNAVILYGAKYRDVPLVVNISGRFNLERGIDDRLGKDYLQRIKQDGFIDVKNKRGTFQYRVTQESLL-------ERLTIDMRAVCQSIDQNCRVLTVHGSMDKMVPVEDAYEFNKIIPNHKLYIVEGADHEFTSYQNELASI 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1534.3957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNQ6_ECTSI2.280e-14677.22Abhydrolase_4 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5LKM1_9PHAE1.540e-9583.89Abhydrolase_4 domain-containing protein n=1 Tax=Ec... [more]
A0A835ZJ96_9STRA4.180e-7353.68Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A250XCV5_9CHLO1.360e-4437.11Hydrolase_4 domain-containing protein n=1 Tax=Chla... [more]
A0A6U2HVN7_9CHLO1.460e-4338.26Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A433P8Y5_9FUNG4.420e-4341.92Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. ... [more]
A0A1Y1YDC5_9FUNG1.290e-4239.27Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristos... [more]
A0A433QCX3_9FUNG1.320e-4140.34Alpha/Beta hydrolase protein n=1 Tax=Jimgerdemanni... [more]
A0A1Y1II24_KLENI1.150e-4039.34Esterase/lipase/thioesterase family protein n=1 Ta... [more]
A0A2P6Q1B3_ROSCH2.640e-4037.85Putative feruloyl esterase n=1 Tax=Rosa chinensis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1534contigH-canaliculatus_F_contig1534:6557..10911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.9
Seed ortholog evalue1.1e-117
Seed eggNOG ortholog2880.D7FNQ6
KEGG koko:K02946,ko:K06889
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
EggNOG free text desc.thiolester hydrolase activity
EggNOG OGsCOG1073@1,KOG4667@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-01_004630.1
Exons6
Model size1534
Cds size972
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1534.3957.1prot_H-canaliculatus_F_contig1534.3957.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1534 6997..10789 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929271.1641152-UTR-H-canaliculatus_F_contig1534:6556..69961622929271.1641152-UTR-H-canaliculatus_F_contig1534:6556..6996Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 6557..6996 -
1696845744.8426113-UTR-H-canaliculatus_F_contig1534:6556..69961696845744.8426113-UTR-H-canaliculatus_F_contig1534:6556..6996Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 6557..6996 -
1622929271.2508898-UTR-H-canaliculatus_F_contig1534:10789..109111622929271.2508898-UTR-H-canaliculatus_F_contig1534:10789..10911Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 10790..10911 -
1696845744.9190972-UTR-H-canaliculatus_F_contig1534:10789..109111696845744.9190972-UTR-H-canaliculatus_F_contig1534:10789..10911Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 10790..10911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929271.1810415-CDS-H-canaliculatus_F_contig1534:6996..72041622929271.1810415-CDS-H-canaliculatus_F_contig1534:6996..7204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 6997..7204 -
1696845744.8558052-CDS-H-canaliculatus_F_contig1534:6996..72041696845744.8558052-CDS-H-canaliculatus_F_contig1534:6996..7204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 6997..7204 -
1622929271.1941352-CDS-H-canaliculatus_F_contig1534:7544..76241622929271.1941352-CDS-H-canaliculatus_F_contig1534:7544..7624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 7545..7624 -
1696845744.8674724-CDS-H-canaliculatus_F_contig1534:7544..76241696845744.8674724-CDS-H-canaliculatus_F_contig1534:7544..7624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 7545..7624 -
1622929271.204168-CDS-H-canaliculatus_F_contig1534:8264..84251622929271.204168-CDS-H-canaliculatus_F_contig1534:8264..8425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 8265..8425 -
1696845744.876448-CDS-H-canaliculatus_F_contig1534:8264..84251696845744.876448-CDS-H-canaliculatus_F_contig1534:8264..8425Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 8265..8425 -
1622929271.216368-CDS-H-canaliculatus_F_contig1534:9039..91241622929271.216368-CDS-H-canaliculatus_F_contig1534:9039..9124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 9040..9124 -
1696845744.887363-CDS-H-canaliculatus_F_contig1534:9039..91241696845744.887363-CDS-H-canaliculatus_F_contig1534:9039..9124Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 9040..9124 -
1622929271.2263095-CDS-H-canaliculatus_F_contig1534:9785..98431622929271.2263095-CDS-H-canaliculatus_F_contig1534:9785..9843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 9786..9843 -
1696845744.8958046-CDS-H-canaliculatus_F_contig1534:9785..98431696845744.8958046-CDS-H-canaliculatus_F_contig1534:9785..9843Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 9786..9843 -
1622929271.2403483-CDS-H-canaliculatus_F_contig1534:10409..107891622929271.2403483-CDS-H-canaliculatus_F_contig1534:10409..10789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 10410..10789 -
1696845744.9043593-CDS-H-canaliculatus_F_contig1534:10409..107891696845744.9043593-CDS-H-canaliculatus_F_contig1534:10409..10789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 10410..10789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1534.3957.1

>prot_H-canaliculatus_F_contig1534.3957.1 ID=prot_H-canaliculatus_F_contig1534.3957.1|Name=mRNA_H-canaliculatus_F_contig1534.3957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=324bp
MFLLAVLVGLFSIALTHSFILLPAAASYQRTASSRAAVTMSFPTDKITTT
AAPASAPAPVSSAGTIEAGKTQLQIRNEKEGYDLNGVLTVKRENSRSIWV
LCHGLCSSSEGMVSRFVSEELDGNTFRFDFAGCGKSGGEWRYAGYDRELG
DLRAVVLHLRELGWAVDGVLGHSKGAAAVLQYGESFDDVPLVVNVAGRFD
TSKTPQSRFTEEQWESLEKNGSFQWNVRGEDLTIMKRDFEERAALNMKKT
AGAIKRSKVLTIHGTEDETIPVADAHEFDKVLPNSELVVVEGATHRFATK
PEQVEVINALNRYLEPRAELPGV*
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mRNA from alignment at H-canaliculatus_F_contig1534:6557..10911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1534.3957.1 ID=mRNA_H-canaliculatus_F_contig1534.3957.1|Name=mRNA_H-canaliculatus_F_contig1534.3957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4355bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1534:6557..10911- (Hapterophycus canaliculatus Oshoro5f female)
CGATAATCCTTCACTCTTCACAATGAACTCCAATTCTCCGCTTGCCTTTG
TGCCGAGCCCCGGGGGGAGATCAAAAGTTCTCCTGCCTGAAGCATGTGAA
GCAGGCAGATTTCCGGACACAGATGTTCCTCCTGGCCGTTCTCGTCGGCC
TGTTTTCGATCGCGCTTACTCATTCGTTCATCCTGCTCCCAGCTGCCGCC
TCGTACCAACGCACGGCGAGTTCAAGGGCTGCCGTAACCATGTCTTTTCC
AACGGACAAGATCACAACAACAGCCGCACCAGCATCGGCACCGGCACCAG
TGTCGTCAGCTGGAACGATCGAAGCAGGGAAAACGCAGTTGCAGATCCGC
AATGAGAAGGAAGGCTACGATCTGAACGGTGTGCTGACGGTGAAACGAGA
GAACTCGAGGTCTATCTGGGTCCTCTGCCACGGACTATGCTCTAGTTCCG
AGGGTATGGTCTCGCGTTTTGTCAGCGAGGAGTTGGACGGCAACACCTTC
AGGTCAGCCTCGCAGCCAGGTCAACCAGAGCCTTGTATCATACCAACCAA
CACGAGTAGTACAAACGTCCGGACACCAGCTCGGGCTGCTGCTGCTCTGA
TGGTACGCAGTTTTTCATCACTACATCCATGGATTGTGATTATTTGTAGG
TCACTCGTTTGCGTGATCCGCTTGATTTAGGTTCCCGGTCACGACACGTA
CCGCGGCGGTGAGAAGCACCCAACCTGTACCTTTACGACCCGAGTAGACT
TTAAACGTACGACTCAAGTCTCCTGTAGAGACTCTAGGGAAATCGCGTGT
AGACAGCAGAACATGGAGAAGGCGCCGACTTTGCGTGGAGGAAATGCCTA
TTGCGTACTTGTTGACGCACAAGAGTCACACGCCAGTGAACCAAGGGCGT
TGCTGTGACGGAAACGGACAGGAGTTGACGATGCGTATCTCTCGCGGCAA
ACGACAGAAGCGGCAGACCGAAAGGTTTCGGCGACGGTAGTCTGCACAGT
CGAAAATAGCTGTCCTTCAATGCTCGACGCTGATTGGCCAAACCCCTCGG
ACACCAATTTTGTCGCAGGTTCGATTTTGCCGGGTGTGGAAAATCCGGGG
GAGAGTGGAGGTACGCCGGCTACGATGTGAGTTGACGTCATCAAGAGAAT
GCATGGTGCATGGCTGTGTGCATGCGTTCGTATGTTCCAGGTCAGAGCTT
TGGTCAGGTTGTTCCATGATGATTGAGCTGCTGTATTTCTGTTCAAAGGA
ACCCGGCCGCCGTGATATTTTGTCTAGACTCTGCCCGCGACCGACGCTTG
GTTTGGCCAGGCACGCTTCCTGGTACTGTATACCTGCTGCGTGTTCGCCG
TCATCTGCAGAGCTTGTTGTTGCTGTTGTTGTGGGAGTTGCTGCCACTTC
TCAATGTTGTCACCCTCATAAGCTCATCGGCTGGTGCGCTTTCTGACTTC
TTCCCGGAATCTGCACCGTTGTAGCGTTTTTGGTCGTGACTCGAGAGGAG
ACCGCGCGCCTGGTGTTTCACGCCCCCTCTTCAGCCCTTTGTCGCCCGTA
CACGCGAGGTTGGCACGCAACTGCGTAATTTTCCTACGGCCTCACCAGGG
TCTGTGCGTGCGAAGCCACCCGCGCAGAGAGTAGAGATCGTGGCGCTGAG
GATGTAGCACCGGTGTATCTTGGGTGGGAGACTATGCAGTGAGATTGGCC
TTGTGTACGCGGAGTTCGTTCTTCGCATAAACGCTTGGCTTTCCTCCTTC
CCTGCTTACCTTGTTCGCGCATGTCGTTGTGTCCCAGAGAGAACTGGGCG
ACTTGCGAGCAGTCGTGCTTCATTTGCGAGAGCTCGGGTGGGCTGTTGAC
GGCGTGTTGGGCCATTCGAAGGGTGAGATAGATAGTTTCTATCATTTTTA
GGGCGAAATATTTGGTCGAGCTGGCGCCAAACATGCATATACGACATATC
AATGAGTGCGTTCGACACTTCTGCCAGCAGTGGACGGCTTACTCCATGTA
CTACGAGGGAAAATTATACCCCCCGCTCACGGGTACACAGAACTGATGAA
TGTGAGGCCAAGCTGATCGTCAGATTATTGATTCGACGTTACGAATCGTT
ATTGCAGCGGCACATTGGTTGCTTCCTCCCCCCTTTTGTGTAAAACCTGG
CGAAGAAACACAAAATATATTCCTGCCCGCTCGTTGCCTGAAAGCGGACG
CATCGCATAACATCGGATCTAAAACATTTCAACATCATCTTTTCAATCCC
TTCATTTTCAACAGAGTGTGTGCTCGACTGACTTGGAAACGCACGAGGGA
TCAGACCCGTCGTCTACACTGCTTCAGTCCCCGCTCTCACGACTCGTCTC
AAAAATGCCCACGTGAGTCGGAACGTACCTTGCGTTTGATTTCCGTCGCA
TTTCGCTAGCTAATGCGTTCCGCTTTATGCCCACGCACTGGCGGGGTGGG
GCGTGTCGTTACCACTGCGGCGTGTCTGGTTTGCAGGCGCTGCGGCCGTG
CTGCAGTACGGAGAGAGCTTCGATGATGTTCCCCTCGTGGTCAACGTCGC
GGGGCGATTCGACACGAGCAAGACTCCTCAGTCGCGCTTCACGGAGGAGC
AGTGGGAAAGCCTGGAGAAAAACGGCTCTTTCCAGTGGAATGTCCGGGTG
CGTTGTTTGCTCGGTACCCATTTCGTTATCTCGTGGGATGCGGCCGGTCT
GGCACTTATAGAGCCACGAGGGCCTTTCCCGTTGTTTGCAAGATTTTCAG
ATGGCTGAAAAACAATTGAGAGAAGGATGGATGTTCCGCTCTAGCCGGCC
GCTATTTTTCGTGGCGGAGAGATGGACGGGCAAACCGAAGAGTTTTCTGA
AATCGGTTATTGTAATGTGTATTTTCCTGCTGTCCCAAATTGCCTATTTT
GGGGGGACAACATTTGCATGATCCAGTGAGAGGAACCGTTTCGTCCGGTT
CCATGCTGTTTCCACAATCCAATATTAAAGTAAACTATGTGGAAAAGCAC
GTGCTAGACTCGGCGAATTACAGCGGCTATGAAACCACATGGTGTGCTGA
GGGTTTGACAGATGGCTGTGACACTACGTGATACAGGATAGAGATCCCAA
CAAGGCGACCAGGCATTGCTCAGAATGGCGGAGCGTCACGTCCAAATACC
GTAGCAACGTTGGGCTACCAGTCCCCTTCTCATTCGCATCACCTCGTGAT
ACACACGAGGTCACCTATCTGTATGCCCGCGCTCACCAAATACTCTGCCC
GTGCGCACCCTTCGATCTACACCTGGCGATGTAAAAGGGGGAAGACCTGA
CCATCATGAAGAGAGATTTCGAGGAAAGAGCCGCGCTCAACATGAAAAAA
ACGGCCGGGGCGATCAAGTAAGTGGCTCAAAGTAGGCCGCACCCGTGCAC
GAGTTGTCTACGCCGCAGCCGGTTTCGTGGTCGAGGTCCACACAAATCAG
GGAATAGGCTGCGATGATACACCCTACGGTTGGATACATTCTGAAATCTT
TCCAAGGGAGCTGGACAACGCCAAACTCGACAGGATCGCGGTAGGTTGGT
CATGACACTCGGTTTATCTGCCTCCAGCTGTACTTCTTGTGCCTTGCCTT
GCGTTCGTGGCCGCTTTCATAACAAATCTGTCTATGTTTTCCTTCCATTC
TTAACCCTTTTTATCACCTCGTCTCCCGCGACATAACCAACGTCAACACG
CGTGCAGGCGGTCTAAGGTCCTCACGATCCACGGCACGGAGGACGAGACG
ATCCCGGTAGCCGACGCACACGAGTTCGACAAGGTCCTGCCCAATAGCGA
GCTCGTTGTCGTGGAGGGCGCGACTCATCGCTTCGCCACCAAACCCGAGC
AAGTCGAAGTGATCAATGCACTGAATCGATACTTGGAACCAAGAGCGGAG
CTACCCGGCGTTTAGAAGAGAACGTTGAAAATTCTTCGGATGCGCTGGCC
GGTGTGTGCGTCCGGGTGTGTATTTGGTTTCCGCGCTCATCCTTTGTTGG
CAGTCGGGAGGTCGTAGAAAAAACGCGACTTTGGCTCTTCAACCGATTGG
TGTCTTGCGTGACGGCGTCATGGGAAAAAAACACAACACCGCAGCAGAGA
CAGACGAAGCACAGCAGTACGAGGCAGAGGTTTTTAGAGTGTGTCCTTGT
GGGGCGTTGCCGACAAAAGGGGGCATGGACTCCGCAAGTCAGAAGTTGTC
TGGGACTGGTGCATGGCGGATACCCGAGGCTGGTTTCACGTGTCGTTGAT
TTTGCAGCGGCACCTGTTGTTATGTACGTCGTAGCGTGAAGAGTGCCATT
CTTTTTCAACGGATAACGTCTCCAGATATCGGAGAATCAGGGTCTTGGCA
CAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1534:6557..10911-

>mRNA_H-canaliculatus_F_contig1534.3957.1 ID=mRNA_H-canaliculatus_F_contig1534.3957.1|Name=mRNA_H-canaliculatus_F_contig1534.3957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1944bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1534:6557..10911- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTCCTCCTGGCCGTTCTCGTCGGCCTGTTTTCGATCGCGCTTACTCA
TTCGTTCATCCTGCTCCCAGCTGCCGCCTCGTACCAACGCACGGCGAGTT
CAAGGGCTGCCGTAACCATGTCTTTTCCAACGGACAAGATCACAACAACA
GCCGCACCAGCATCGGCACCGGCACCAGTGTCGTCAGCTGGAACGATCGA
AGCAGGGAAAACGCAGTTGCAGATCCGCAATGAGAAGGAAGGCTACGATC
TGAACGGTGTGCTGACGGTGAAACGAGAGAACTCGAGGTCTATCTGGGTC
CTCTGCCACGGACTATGCTCTAGTTCCGAGGGTATGGTCTCGCGTTTTGT
CAGCGAGGAGTTGGACGGCAACACCTTCAGATGTTCCTCCTGGCCGTTCT
CGTCGGCCTGTTTTCGATCGCGCTTACTCATTCGTTCATCCTGCTCCCAG
CTGCCGCCTCGTACCAACGCACGGCGAGTTCAAGGGCTGCCGTAACCATG
TCTTTTCCAACGGACAAGATCACAACAACAGCCGCACCAGCATCGGCACC
GGCACCAGTGTCGTCAGCTGGAACGATCGAAGCAGGGAAAACGCAGTTGC
AGATCCGCAATGAGAAGGAAGGCTACGATCTGAACGGTGTGCTGACGGTG
AAACGAGAGAACTCGAGGTCTATCTGGGTCCTCTGCCACGGACTATGCTC
TAGTTCCGAGGGTATGGTCTCGCGTTTTGTCAGCGAGGAGTTGGACGGCA
ACACCTTCAGGTTCGATTTTGCCGGGTGTGGAAAATCCGGGGGAGAGTGG
AGGTACGCCGGCTACGATGTTCGATTTTGCCGGGTGTGGAAAATCCGGGG
GAGAGTGGAGGTACGCCGGCTACGATAGAGAACTGGGCGACTTGCGAGCA
GTCGTGCTTCATTTGCGAGAGCTCGGGTGGGCTGTTGACGGCGTGTTGGG
CCATTCGAAGGAGAGAACTGGGCGACTTGCGAGCAGTCGTGCTTCATTTG
CGAGAGCTCGGGTGGGCTGTTGACGGCGTGTTGGGCCATTCGAAGGGCGC
TGCGGCCGTGCTGCAGTACGGAGAGAGCTTCGATGATGTTCCCCTCGTGG
TCAACGTCGCGGGGCGATTCGACACGAGCAAGACTCCTCAGTCGCGCTTC
ACGGAGGAGCAGTGGGAAAGCCTGGAGAAAAACGGCTCTTTCCAGTGGAA
TGTCCGGGCGCTGCGGCCGTGCTGCAGTACGGAGAGAGCTTCGATGATGT
TCCCCTCGTGGTCAACGTCGCGGGGCGATTCGACACGAGCAAGACTCCTC
AGTCGCGCTTCACGGAGGAGCAGTGGGAAAGCCTGGAGAAAAACGGCTCT
TTCCAGTGGAATGTCCGGGGGGAAGACCTGACCATCATGAAGAGAGATTT
CGAGGAAAGAGCCGCGCTCAACATGAAAAAAACGGCCGGGGCGATCAAGG
GGAAGACCTGACCATCATGAAGAGAGATTTCGAGGAAAGAGCCGCGCTCA
ACATGAAAAAAACGGCCGGGGCGATCAAGCGGTCTAAGGTCCTCACGATC
CACGGCACGGAGGACGAGACGATCCCGGTAGCCGACGCACACGAGTTCGA
CAAGGTCCTGCCCAATAGCGAGCTCGTTGTCGTGGAGGGCGCGACTCATC
GCTTCGCCACCAAACCCGAGCAAGTCGAAGTGATCAATGCACTGAATCGA
TACTTGGAACCAAGAGCGGAGCTACCCGGCGTTTAGGCGGTCTAAGGTCC
TCACGATCCACGGCACGGAGGACGAGACGATCCCGGTAGCCGACGCACAC
GAGTTCGACAAGGTCCTGCCCAATAGCGAGCTCGTTGTCGTGGAGGGCGC
GACTCATCGCTTCGCCACCAAACCCGAGCAAGTCGAAGTGATCAATGCAC
TGAATCGATACTTGGAACCAAGAGCGGAGCTACCCGGCGTTTAG
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