mRNA_H-canaliculatus_F_contig1534.3956.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1534.3956.1
Unique NamemRNA_H-canaliculatus_F_contig1534.3956.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: D7FNQ5_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ5_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 1.080e-134
Identity = 212/252 (84.13%), Postives = 224/252 (88.89%), Query Frame = 3 
Query:  432 MLLRSIRPRALMRLGGTVPAAAPTSPAVASGNGFRRTTRSYSSTRRAEMNYLPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGVGSGNVE 1187
            MLL SI  RAL  L G  PAAA  S         R   R+YSSTRR EMNYLPMVLES+PRGERAYDIYSRLLRERIIC+HGPVTEQM+SLVTAQLL+LESE+P KPINMYINSPGG+VTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSP+MRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLN+IYAEHTG++V EIEKVMDRDFYMTAQEAIEFGVVDKIL KRPKEG GSG V+
Sbjct:    1 MLLTSIHARALASLAGAGPAAAKNS---------RIAFRAYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGSGTVQ 243
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BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A835Z6X3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X3_9STRA)

HSP 1 Score: 295 bits (756), Expect = 9.350e-93
Identity = 152/211 (72.04%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:  528 GFRRTTRSYSSTRRAEMNYLPMVLESSP-RGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRP 1157
            G R+  RS SST       +PMV+ES+P +GER +DIYSRLLRERI+ L GPV+E+M+S+VTAQLL+LESEDP+KPI+MYINSPGG+VTAGLAIYDTMQYV P+ICT+CMGQAASM SLLLTAG P MR+ILPNA+VMLHQPSGGA+GMAADIAI+AEEI++TR+ LN +Y+ HTGQ V EIEKVMDRD +  AQ+AI FGVVD I  KRP
Sbjct:   13 GARQLHRSISSTA-VSRALVPMVVESTPGKGERGFDIYSRLLRERIVFLQGPVSEEMASVVTAQLLFLESEDPEKPISMYINSPGGLVTAGLAIYDTMQYVGPKICTVCMGQAASMASLLLTAGEPGMRYILPNARVMLHQPSGGAHGMAADIAIVAEEILRTRSVLNNLYSHHTGQPVSEIEKVMDRDTHYDAQQAIAFGVVDAIHEKRP 222
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BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A7S3KZ88_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ88_9STRA)

HSP 1 Score: 286 bits (732), Expect = 6.640e-89
Identity = 137/195 (70.26%), Postives = 167/195 (85.64%), Query Frame = 3 
Query:  585 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGV 1169
            +P+VLES   GER++DIYSRLLRERIIC+HG VT+ M+SLVTAQLL+LESE+P +P+ MYINSPGG+VTAG+A+YDTMQY+RPE+ TICMGQAASMGS+LL  G P  RF LPN+++MLHQPSGGA GMAADI I A EI++TRA LN I AEHT Q +EEIE+VMDRDF+M AQ+A +FGV+D ILTKR K+ +
Sbjct:   46 VPIVLESGAMGERSFDIYSRLLRERIICVHGEVTDVMASLVTAQLLFLESENPDRPVYMYINSPGGLVTAGMAMYDTMQYIRPEVQTICMGQAASMGSVLLAGGEPGYRFALPNSRIMLHQPSGGAQGMAADIDIQAREILRTRANLNRIMAEHTKQSIEEIERVMDRDFFMDAQQAKDFGVIDHILTKRTKDEI 240
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BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A6U3X7K7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X7K7_9STRA)

HSP 1 Score: 284 bits (726), Expect = 1.420e-88
Identity = 136/190 (71.58%), Postives = 163/190 (85.79%), Query Frame = 3 
Query:  585 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKR 1154
            +P+VLE + RGERAYDIYSRLLRERIICLHGPVTE M+SLVTAQLL+LESE P +P++MYINSPGG+V+AGLAIYDTMQY++PE+ T+CMGQAASMGSLLL  G+P  R+ LPNAK+MLHQPSGGA GMA+DIAI AEEI+KTRA LN +Y  HTGQ ++ +EK MDRD +    +A EFGV+D+ILT R
Sbjct:   21 VPIVLEQTSRGERAYDIYSRLLRERIICLHGPVTEDMASLVTAQLLFLESELPDQPLSMYINSPGGLVSAGLAIYDTMQYIKPEVRTMCMGQAASMGSLLLAGGAPGHRYALPNAKIMLHQPSGGAQGMASDIAIQAEEILKTRATLNNLYVRHTGQPLDRVEKAMDRDTWFDVTQAKEFGVIDQILTNR 210
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BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: B8BVD6_THAPS (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVD6_THAPS)

HSP 1 Score: 280 bits (716), Expect = 2.200e-87
Identity = 131/190 (68.95%), Postives = 165/190 (86.84%), Query Frame = 3 
Query:  585 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKR 1154
            +P+VLES   GERA+DIYSRLLRERIIC+HG VT+ M+SLVTAQLL+LE+E P+KP+ MYINSPGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGSLLL  GS   RF LPNA++MLHQPSGGA GMA+DI I A EI++TRA LN++Y  HTG+++EEIE+VMDRD +M  ++A++FGV+D++LTKR
Sbjct:    2 VPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYMYINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNARIMLHQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVDFGVIDEVLTKR 191
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BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A6S9KWE2_HETAK (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KWE2_HETAK)

HSP 1 Score: 280 bits (715), Expect = 1.880e-86
Identity = 137/216 (63.43%), Postives = 175/216 (81.02%), Query Frame = 3 
Query:  546 RSYSSTRRAEMNYLPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPK---EGVGSGNV 1184
            R ++S+     N +PMVLESS RGERAYDIYSRLLRERII +HGP+TEQ++S+VTAQLL+LE+EDP K + MYINSPGG+VTAG+AIYDTMQ+++ ++ TICMGQAASMGSLLL  G+P  R  LPNA++MLHQPSGGA GMA+DIAI AEEI++ R+ LN++Y  HTGQ + +IE+VM+RD +  AQ+A+ FGV+DK+L+KR     E   SG V
Sbjct:   29 RFFTSSWEPTANLVPMVLESSNRGERAYDIYSRLLRERIIYVHGPITEQLASVVTAQLLFLEAEDPDKKLYMYINSPGGVVTAGMAIYDTMQFIQSDVATICMGQAASMGSLLLAGGAPGQRSALPNARIMLHQPSGGAQGMASDIAIQAEEILRIRSSLNQLYQHHTGQALADIERVMERDTFFDAQQALNFGVIDKVLSKRDNSSDESCESGKV 244
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: F0YHM6_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM6_AURAN)

HSP 1 Score: 276 bits (707), Expect = 5.310e-86
Identity = 132/193 (68.39%), Postives = 168/193 (87.05%), Query Frame = 3 
Query:  585 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKE 1163
            +PMV+E S RGERA+DIYSRLL+ERII L+GPV ++++S+VTAQLL+LESEDP  PI+MYINSPGG+VTAGLAIYDTMQY++P + T+CMGQAASMGSLLL AG+  MR  LPNA++MLHQPSGGA G A+DIAI+A+EI+KTRA+LN+IY  HT + + ++EKVMDRD Y TAQEA++FGVVD+++  R K+
Sbjct:    2 VPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISMYINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQIMLHQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMDFGVVDEVVHPRTKD 194
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A7S2SUT0_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUT0_9STRA)

HSP 1 Score: 278 bits (710), Expect = 6.260e-86
Identity = 133/195 (68.21%), Postives = 164/195 (84.10%), Query Frame = 3 
Query:  585 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGV 1169
            +P+VLE S RGER+YDIYSRLLRERIICLHG VTE+M+S+VTAQLL+LE+EDP +P +MYINSPGG+V+AGLAIYDTMQY+RP + T+CMGQAASMGSLLL  G    RF LPNAK+MLHQPSGG  GMA+DIAI AEEI+KTR+ LN++Y  H  Q++ ++E VMDRD + +AQEA++FGV+D +L KR  E V
Sbjct:   25 VPIVLEQSSRGERSYDIYSRLLRERIICLHGAVTEEMASVVTAQLLFLEAEDPDRPCSMYINSPGGLVSAGLAIYDTMQYIRPPVHTVCMGQAASMGSLLLAGGEAGKRFALPNAKIMLHQPSGGTQGMASDIAIAAEEILKTRSSLNKLYVHHCQQELAQVEAVMDRDTWFSAQEALDFGVIDDMLRKREDEPV 219
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A7S0AV16_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AV16_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.300e-85
Identity = 139/214 (64.95%), Postives = 172/214 (80.37%), Query Frame = 3 
Query:  540 TTRSYSS-TRRAEMNYLPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGVGSG 1178
            T RS SS T+      +P+V+ES   GER++DI+SRLLRERIIC+HG V + M+SLVTAQLL+LE+E+P  PI MYINSPGG+VTAG+A+YDTMQYV+P++ TICMGQAASMGSLLL  G+P  R  LPNA++MLHQPSGGA GMA DI IMA+EI++TRA LN++Y  HTGQ +EEIE+VMDRD++M   +AIEFGV+DKIL KR     G G
Sbjct:   88 THRSISSATKPVSAGLVPIVIESGAGGERSFDIFSRLLRERIICVHGQVDDHMASLVTAQLLFLEAENPTSPIYMYINSPGGVVTAGMAMYDTMQYVQPDVHTICMGQAASMGSLLLAGGAPGCRHALPNARIMLHQPSGGAQGMATDIDIMAKEILRTRANLNKLYVHHTGQSLEEIERVMDRDYFMDVNQAIEFGVIDKILDKRGDADGGEG 301
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Match: A0A7S4N593_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N593_9STRA)

HSP 1 Score: 278 bits (712), Expect = 2.260e-85
Identity = 132/192 (68.75%), Postives = 163/192 (84.90%), Query Frame = 3 
Query:  585 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPK 1160
            +P+VLESSP GER++DI+SRLLRERIIC+HG VT+ M+SLVTAQLL+LE+E P +PI MYINSPGG+VTAG+A+YDTMQYVRPE+ TICMGQAASMGSLLL  G+   RF LPN+++MLHQP GGA GMAADI I A EI++TRA LN +Y  HTGQ ++EIE+VMDRDF+M   ++IEFGV+D +L +R K
Sbjct:   69 VPVVLESSPGGERSFDIFSRLLRERIICVHGEVTDHMASLVTAQLLFLEAEAPDRPIYMYINSPGGLVTAGMAMYDTMQYVRPEVHTICMGQAASMGSLLLAGGAKGCRFALPNSRIMLHQPRGGAQGMAADIDIQAREILRTRANLNNLYVHHTGQTLDEIERVMDRDFFMDVNQSIEFGVIDDVLDRRDK 260
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1534.3956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNQ5_ECTSI1.080e-13484.13ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z6X3_9STRA9.350e-9372.04ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S3KZ88_9STRA6.640e-8970.26ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6U3X7K7_9STRA1.420e-8871.58ATP-dependent Clp protease proteolytic subunit n=1... [more]
B8BVD6_THAPS2.200e-8768.95ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A6S9KWE2_HETAK1.880e-8663.43ATP-dependent Clp protease proteolytic subunit n=2... [more]
F0YHM6_AURAN5.310e-8668.39ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2SUT0_9STRA6.260e-8668.21ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0AV16_9STRA1.300e-8564.95ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S4N593_9STRA2.260e-8568.75ATP-dependent Clp protease proteolytic subunit n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1534contigH-canaliculatus_F_contig1534:1858..7027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score410.2
Seed ortholog evalue7.7e-112
Seed eggNOG ortholog2880.D7FNQ5
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit ClpP
Ec32 orthologEc-01_004640.1
Exons6
Model size1981
Cds size852
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1534.3956.1prot_H-canaliculatus_F_contig1534.3956.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1534 2649..5939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929271.03401-UTR-H-canaliculatus_F_contig1534:1857..26481622929271.03401-UTR-H-canaliculatus_F_contig1534:1857..2648Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 1858..2648 -
1696845744.729915-UTR-H-canaliculatus_F_contig1534:1857..26481696845744.729915-UTR-H-canaliculatus_F_contig1534:1857..2648Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 1858..2648 -
1622929271.1166024-UTR-H-canaliculatus_F_contig1534:5939..62101622929271.1166024-UTR-H-canaliculatus_F_contig1534:5939..6210Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 5940..6210 -
1696845744.813142-UTR-H-canaliculatus_F_contig1534:5939..62101696845744.813142-UTR-H-canaliculatus_F_contig1534:5939..6210Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 5940..6210 -
1622929271.12758-UTR-H-canaliculatus_F_contig1534:6960..70271622929271.12758-UTR-H-canaliculatus_F_contig1534:6960..7027Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 6961..7027 -
1696845744.8229256-UTR-H-canaliculatus_F_contig1534:6960..70271696845744.8229256-UTR-H-canaliculatus_F_contig1534:6960..7027Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1534 6961..7027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929271.047158-CDS-H-canaliculatus_F_contig1534:2648..27831622929271.047158-CDS-H-canaliculatus_F_contig1534:2648..2783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 2649..2783 -
1696845744.7452078-CDS-H-canaliculatus_F_contig1534:2648..27831696845744.7452078-CDS-H-canaliculatus_F_contig1534:2648..2783Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 2649..2783 -
1622929271.0602176-CDS-H-canaliculatus_F_contig1534:3693..38161622929271.0602176-CDS-H-canaliculatus_F_contig1534:3693..3816Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 3694..3816 -
1696845744.756604-CDS-H-canaliculatus_F_contig1534:3693..38161696845744.756604-CDS-H-canaliculatus_F_contig1534:3693..3816Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 3694..3816 -
1622929271.0764213-CDS-H-canaliculatus_F_contig1534:4338..44981622929271.0764213-CDS-H-canaliculatus_F_contig1534:4338..4498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 4339..4498 -
1696845744.7702892-CDS-H-canaliculatus_F_contig1534:4338..44981696845744.7702892-CDS-H-canaliculatus_F_contig1534:4338..4498Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 4339..4498 -
1622929271.0886369-CDS-H-canaliculatus_F_contig1534:5098..52171622929271.0886369-CDS-H-canaliculatus_F_contig1534:5098..5217Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 5099..5217 -
1696845744.791998-CDS-H-canaliculatus_F_contig1534:5098..52171696845744.791998-CDS-H-canaliculatus_F_contig1534:5098..5217Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 5099..5217 -
1622929271.1042032-CDS-H-canaliculatus_F_contig1534:5624..59391622929271.1042032-CDS-H-canaliculatus_F_contig1534:5624..5939Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 5625..5939 -
1696845744.803374-CDS-H-canaliculatus_F_contig1534:5624..59391696845744.803374-CDS-H-canaliculatus_F_contig1534:5624..5939Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1534 5625..5939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1534.3956.1

>prot_H-canaliculatus_F_contig1534.3956.1 ID=prot_H-canaliculatus_F_contig1534.3956.1|Name=mRNA_H-canaliculatus_F_contig1534.3956.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=284bp
MTRRRQPQARQLDTLSCFPAPCCAPTTIASIMLLRSIRPRALMRLGGTVP
AAAPTSPAVASGNGFRRTTRSYSSTRRAEMNYLPMVLESSPRGERAYDIY
SRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIV
TAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVM
LHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDR
DFYMTAQEAIEFGVVDKILTKRPKEGVGSGNVE*
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mRNA from alignment at H-canaliculatus_F_contig1534:1858..7027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1534.3956.1 ID=mRNA_H-canaliculatus_F_contig1534.3956.1|Name=mRNA_H-canaliculatus_F_contig1534.3956.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5170bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1534:1858..7027- (Hapterophycus canaliculatus Oshoro5f female)
GGAACCAAGAGCGGAGCTACCCGGCGTTTAGAAGAGAACGTTGAAAATTC
TTCGGATGCGCTGGCCGGTGTGTGCGTCCGGGTGTGTATTTGGTTTCCGC
GCTCATCCTTTGTTGGCAGTCGGGAGGTCGTAGAAAAAACGCGACTTTGG
CTCTTCAACCGATTGGTGTCTTGCGTGACGGCGTCATGGGAAAAAAACAC
AACACCGCAGCAGAGACAGACGAAGCACAGCAGTACGAGGCAGAGGTTTT
TAGAGTGTGTCCTTGTGGGGCGTTGCCGACAAAAGGGGGCATGGACTCCG
CAAGTCAGAAGTTGTCTGGGACTGGTGCATGGCGGATACCCGAGGCTGGT
TTCACGTGTCGTTGATTTTGCAGCGGCACCTGTTGTTATGTACGTCGTAG
CGTGAAGAGTGCCATTCTTTTTCAACGGATAACGTCTCCAGATATCGGAG
AATCAGGGTCTTGGCACAGGAGTGTGTGTGTGTGTGTGTGTTTGTGTTGC
CATTATTAATGGAACGGTCTACACCTTTGCGGTATATATGTCGTCTGACC
CGGAGTCACACAGGGTGCGGTAGATGTCCCAAGCCCGATATCTCGACCAC
GGAAGAGAGTGTGCGGAATTCAAAAACCCCATTTTCGGAAAGCTATATGG
ACAAGAAGATCTTGCCAAACACATCTTCTCCGACGTTGGCAACCTCAACG
TTGTCGAGATATCGCGCCATGCAAAAGTACCACACCCCTGAACAAAAACC
CCAATTGTTGGCGTCACCAACCCAAGTTTTCGACATCGATCTCTCAACTG
GTTACTGCTGTCTGCAGGTGGCAGCTCGACCAAGACGGAAACAATCTACA
ATCTGGGGGGATTCCGTTGGGCAGCCTGCGAAAGAAAAAAGTGCACGCAA
GTTACGTGTGAAAATCCCACCAGCACTGCAGCAGTTCATTCATGCAAAGC
GAAGAAAGACACAGCACCTACTGCTGCAACCGACGGATTCTACTGGTTGG
ATACTCGGTACCCAGATGGTGACGCCCAGTAAACCAGGGGGTGGGAACAG
ATTTGATACCACGAAACCCCTCGGAATTACGCCGCACGATGACACGGCGA
CGGCAACCCCAAGCTCGACAGCTCGACACACTTTCCTGTTTTCCTGCTCC
CTGTTGTGCACCAACCACGATAGCTTCAATTATGCTCTTGCGATCGATAC
GCCCCCGAGCATTAATGCGTCTGGGCGGCACAGTACCAGCTGCCGCTCCC
ACTTCTCCGGCGGTTGCCTCCGGGAACGGCTTCCGCCGAACTACCAGGTC
TTACAGCAGCACACGGCGAGCAGAGATGAACTACCTGCCCATGGTGCTCG
AGTCAAGTCCGCGAGGGGAACGCGCATACGATATCTACTCAAGGCTTCTC
AGGGTACGTCTTTTGGACAAACTCATTCATGTAAATACTCTGCTGCTTCT
TGCACTTGAATTTGAAGTTTGTCGGTGTCAGCCCCCCAAGTTGATGTACC
CGAGAATGATCGCCTGTTTGCGCCGAGTGTTCAGGTTGACGCATTGACGT
GCAGACACAGGTGGGTCAACATCGGAGAGCGTATGACGGGTCTATGGTTG
TGTGTTTCTCCGACGCTGCATACACGGGTTGCGATAAAGAGCGCATATAT
TGAGCGGGGGATGTTTTGTTCCTCGCTCTGTTCGCCAATACGAAGCACCT
CGAGACAGAACTAAAAAAATCCAGGATACTGTACAACGTTCGATTCGTTG
CATTGAAGTCACCGGTTGGCGGCGGCGTCCTCTGTTCGTCACGCGCGTGC
TCATTTTCAGGAACGCATCATCTGCCTGCATGGACCTGTGACGGAGCAAA
TGTCTTCCTTAGTGACGGCCCAGCTCCTTTACCTGGAATCTGAAGATCCA
CAGAAGCCAATCAACATGTATATCAACAGGTCGGTGAACACTCTCTGATA
CGGCAGCAAGACACGCAGCAACTTGCGGTCATCACACCCTTCTTTCCAAG
CAGTCAAACGTAGCGGGTCGCACTCGATGTCGTTGCCCATGTGTGTATCT
CCATTGCGTCCGAGAGCTGTGTGTCGTCGAGCTCGCATTTCATCCTAACC
GCGGGTGTCTTCTTCACGCCCGGGCGGCAGGAGATCTCTGGTTCGGGTGG
TCGCTTCCTCCTGTGTTCCTGGTGTCTTTCTTGGATTCGACACTTGTCGT
CCTGCCGTCTTGTTCGGTACAAGGAGCATTGGTCAGTCTCGGCACACGCC
ATCCGTGCGAGGGTGCGGGCACGGATACGCGCAGCATAGAATGGGCAACG
TCCACATGCCGCGTGGTCGTTGCAGCCTTGGAGCAATCGTGGTTTGGCTT
GGGTAGCGAACATGCACTGCCAAGTTTCCAGGGTCGTGGATGGAGAGCTG
CAACCGCGTCCGTTTCATACATCCTGCTGAAACCCATTGTCACAGCTCCA
AGTTGAGGGCATGGCTTATAATAATTCCTCTCCTCGTACGCGTCCCCCAT
CGTTCACCTGAAATAACCGTCGAACGTAGCCCGGGCGGCATAGTCACGGC
TGGATTGGCGATCTACGACACAATGCAGTACGTTCGACCGGAGATCTGCA
CAATCTGTATGGGGCAGGCGGCGTCGATGGGGTCGCTCTTGCTGACTGCG
GGTTCTCCAGATATGCGTTTCATTCTCCCAAACGCGAAGGTGAGGCGGCG
TGTAGGATGGGGAAGGCTTAGACGGGTCCGAACGTTGAAGACTGCTCATG
GAAATTATTTTTGGAAAGCGCTTGTCCAGGCACTGGGAAGAGCTTTGAAA
CGTGAAAGTAAAGGCCCCACCCAGAACCTGTAACCTGGTTCGCCAGGAGA
AAGCGAATAGGTGCCCAGCGTGCAGAAGTGGACGGAAGCGCAAAGCTCCG
CGTAGTCTCCACTTCCTTGCTTGCCTAGCTTCCTCTCGCGCACGCCTGTC
TCGCCTGCTTTTGATGGCTCAGCGCGAGGTTATCAAGAGGGGTAGAATAG
CTTGCCACCCGTTTGGCACAAGAACGAGCATGACTTGTCCACCTTGCGTG
ATTCTAAGCGTTCCAACCAAGCTGTATCCTCATCGCCTACTACTGCTGTT
CATGCGGTTCCGCGAAGGGGTCGAGCGGTTCCGCGAAGGGGTCGCAGAAA
CTAGACGACGCTCCGCATCACACGCTTGCTGCGCCGTACGTCGATCTAAT
CGACGGGACAGGTCATGTTGCACCAGCCATCAGGCGGGGCGAATGGCATG
GCGGCCGATATCGCCATCATGGCGGAGGAAATAATCAAGACCAGGGCGCG
GTTGAACGAGATATACGCGGAGCACACCGGACAAGTGAGTCGTGAGACAC
GCAGCCGCTGCTTCTTTCTGTGCCGTGGACGCATGCACGACGCCTGCTCC
TTGTAGGATGAAGAGGGGTGTCACGTAAGGCCAACGGCCAAACCCCAAGC
CTACGATATTTCCGTGGTGCCCGAACGGACAGACAAGAAGTGCTTGCTGC
TGGTTCGTCGGGCAGCTTCGCGTTGTGGCCGACATGTGGTTGCTGTGCTC
TGCTGTGTCTCGTGGGTCACATGTGAAATGTCGACGCTGAGATTCCAACG
CCGATGCACCTACACGTATCACGGTACTTCTCCCATCCTGTGAGATGCTT
GGCTCTGGTGTTTCGGCACCCTGTCGCCAGCACGCCGCCACCGAGGCATA
CAGCATACTTGTGCACGGACGTTGCCTTGTCGGACAGGCACAGCATGTTT
CCAAGTACAATACTTCGTACAATACTTCGTACAAATCAAGCGCAATTGTG
TGGAGAGAGAGTCCGGCTGGCTTGTGCTTCGATACTAGTGCTTGGGCGTC
ACAAGTGGGCGACGTGCGCTGCCTTGCGACGTGTGGACGCCGATCCTCGT
CACCTTCAGAATGTCGACGTTCGTTTCCTCTTTGGGTGTCCCTACTGGAT
CGTAGCAAGACATCTACCGTTCCAGCGCGAAGATCACGAACAGCAGTGCA
GGCATGCAAGAGCGCGCCACAAAAAAATGATACCGCCTTTCCTCGATCGT
CGATCCCATCTTCTTGCTTTGCCATCCACACCTCAACTGTCATCTTGACG
CACTTTGCTGCTCCCGATGATCTTCGTCGTGCCGTTGTCGGTCCCTCCGT
TCCTTTTAACCTACCGGACTATCGCGCCGCCTGTTGGTGCGGATCCGGCT
GGGTTCCGCCCCTCTTGGGCCTGTCTCTTTTTTTTCTCCCAAAGAAAGTG
GAGGAGATCGAGAAGGTAATGGACCGCGATTTCTATATGACCGCACAGGA
GGCGATCGAGTTCGGCGTCGTAGACAAGATTCTTACAAAGCGGCCAAAAG
AAGGCGTGGGCTCCGGAAACGTGGAGTAGTTCGTATGATGCCATAGTTTT
TGTAGGAATGAATGCTGCCGTGATGTGGTGAAGAACGCGTACGTGTTGTC
GGGGATCTCCTGTTAGCCTGTTTGGGTATTCGGCGCTCTCACGTGCTTGT
CCTTGAGATGTACTCTCATCAAAAGCTCTGTCGGAGCTCTGATGCGTACT
GTCGTGTCGGCATTTCTTGAGCACGTCGTCAGTCGTGGGTGTGGGAAGAC
AGTCAGCAGGAGAGAAGGCCCCGTATCTAGGTCATCACGTAACGGGAGAC
AGTGGAGAGGTTGGGATCTGCCCTCTTGGGCGGGAACGGGCGTTAATGTG
TGTATGAGAAAACTGAAGATTGTCGTCCTCGCTCACCCCGGGAGGGAACA
GGGTGTAAATAGTAGTGGATTCTTACCAGACTGGCCGGAGATAGGTCCAT
TCTGTATCTATACAATGCCTCGGAGCTGTTGTGGCAACGTCAAATTACTC
GGTACAACTTGAACTACCTATCTAAACATAGCCAAATGTGCCAAGATATT
CCTGAAATTGGGGGTGGGGTTTCACTCCCCCGAGGGTACGACCGAGGGTA
TCCCACCATTTTCCGGTGAGGAGGCGTTTTTGATACTTCGACGGATGGGG
TGAATACATTCCTCAAGCGAGTTGTTTTGGCGCTTTTCGTTGGATCTCTG
GCCTCTTTCAACAACGTCAAGTTCATACGTCAGACCTGTTGTTGAAGGTC
CTCAGCCGGATCGATGACAACACCCGAAACATACGCGATCACCATGCGCA
CGAAGGTCAAGATTTGATGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1534:1858..7027-

>mRNA_H-canaliculatus_F_contig1534.3956.1 ID=mRNA_H-canaliculatus_F_contig1534.3956.1|Name=mRNA_H-canaliculatus_F_contig1534.3956.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1704bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1534:1858..7027- (Hapterophycus canaliculatus Oshoro5f female)
ATGACACGGCGACGGCAACCCCAAGCTCGACAGCTCGACACACTTTCCTG
TTTTCCTGCTCCCTGTTGTGCACCAACCACGATAGCTTCAATTATGCTCT
TGCGATCGATACGCCCCCGAGCATTAATGCGTCTGGGCGGCACAGTACCA
GCTGCCGCTCCCACTTCTCCGGCGGTTGCCTCCGGGAACGGCTTCCGCCG
AACTACCAGGTCTTACAGCAGCACACGGCGAGCAGAGATGAACTACCTGC
CCATGGTGCTCGAGTCAAGTCCGCGAGGGGAACGCGCATACGATATCTAC
TCAAGGCTTCTCAGGATGACACGGCGACGGCAACCCCAAGCTCGACAGCT
CGACACACTTTCCTGTTTTCCTGCTCCCTGTTGTGCACCAACCACGATAG
CTTCAATTATGCTCTTGCGATCGATACGCCCCCGAGCATTAATGCGTCTG
GGCGGCACAGTACCAGCTGCCGCTCCCACTTCTCCGGCGGTTGCCTCCGG
GAACGGCTTCCGCCGAACTACCAGGTCTTACAGCAGCACACGGCGAGCAG
AGATGAACTACCTGCCCATGGTGCTCGAGTCAAGTCCGCGAGGGGAACGC
GCATACGATATCTACTCAAGGCTTCTCAGGGAACGCATCATCTGCCTGCA
TGGACCTGTGACGGAGCAAATGTCTTCCTTAGTGACGGCCCAGCTCCTTT
ACCTGGAATCTGAAGATCCACAGAAGCCAATCAACATGTATATCAACAGG
AACGCATCATCTGCCTGCATGGACCTGTGACGGAGCAAATGTCTTCCTTA
GTGACGGCCCAGCTCCTTTACCTGGAATCTGAAGATCCACAGAAGCCAAT
CAACATGTATATCAACAGCCCGGGCGGCATAGTCACGGCTGGATTGGCGA
TCTACGACACAATGCAGTACGTTCGACCGGAGATCTGCACAATCTGTATG
GGGCAGGCGGCGTCGATGGGGTCGCTCTTGCTGACTGCGGGTTCTCCAGA
TATGCGTTTCATTCTCCCAAACGCGAAGCCCGGGCGGCATAGTCACGGCT
GGATTGGCGATCTACGACACAATGCAGTACGTTCGACCGGAGATCTGCAC
AATCTGTATGGGGCAGGCGGCGTCGATGGGGTCGCTCTTGCTGACTGCGG
GTTCTCCAGATATGCGTTTCATTCTCCCAAACGCGAAGGTCATGTTGCAC
CAGCCATCAGGCGGGGCGAATGGCATGGCGGCCGATATCGCCATCATGGC
GGAGGAAATAATCAAGACCAGGGCGCGGTTGAACGAGATATACGCGGAGC
ACACCGGACAAGTCATGTTGCACCAGCCATCAGGCGGGGCGAATGGCATG
GCGGCCGATATCGCCATCATGGCGGAGGAAATAATCAAGACCAGGGCGCG
GTTGAACGAGATATACGCGGAGCACACCGGACAAAAAGTGGAGGAGATCG
AGAAGGTAATGGACCGCGATTTCTATATGACCGCACAGGAGGCGATCGAG
TTCGGCGTCGTAGACAAGATTCTTACAAAGCGGCCAAAAGAAGGCGTGGG
CTCCGGAAACGTGGAGTAGAAAGTGGAGGAGATCGAGAAGGTAATGGACC
GCGATTTCTATATGACCGCACAGGAGGCGATCGAGTTCGGCGTCGTAGAC
AAGATTCTTACAAAGCGGCCAAAAGAAGGCGTGGGCTCCGGAAACGTGGA
GTAG
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