mRNA_H-canaliculatus_F_contig1533.3953.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1533.3953.1
Unique NamemRNA_H-canaliculatus_F_contig1533.3953.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A6H5K9C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C6_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 7.240e-103
Identity = 206/389 (52.96%), Postives = 243/389 (62.47%), Query Frame = 1 
Query:   37 HQESDLQTLSP--ASRTPSILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVVNTYCLPKTASAATAAASSTSMPVGLATGSTALPALSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPASPICTGTKG-------GGGGNGLGDES-PGVPFCRDPTSSTGQKTKMTVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQLETLCLESGALAVLRKPLNAGEIQSFAVQVGLTLPTPP 1173
            HQE D    +   A RTPSILVVDDSRIS QIA+RSLS+A  +VE+A DGE+GL  L +  SSFDL+LLDVVMPGLDG+E+LTR+KQDP L H+PV +LSGLE +RLE++CLQQGA VV+RKP+ AE VV+VV  YC  +  +AA A A     P G           SPP                                          PP  P    TKG       GG      D    G P  R+  SST     MTVL+V+DSVISSKLAI+KLR LG + IS ENGRAALD++R  PDR+S VL D++MPVM+G+ELL V+K+DP LR+IPVVVVSSLERR+LE LCLESGALAVLRKP  A EIQ  A Q GL LP  P
Sbjct:   11 HQEQDESAAASGFAPRTPSILVVDDSRISRQIAERSLSRAKLYVEVAPDGEVGLARLQAQPSSFDLILLDVVMPGLDGVEVLTRVKQDPQLSHIPVVMLSGLESDRLEEVCLQQGAVVVLRKPLTAEKVVQVVEAYCAQREGAAAGAGAEEAPPPSGGE-------GHSPPRDLPPGIDASAGFEHAEAFPSTGAGLAPGVP-----------PPPEPHPAETKGPLGSAPTGGXXXXXXDRGLSGSPSRRESASSTLPTANMTVLVVEDSVISSKLAIQKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRVVKDDPILRKIPVVVVSSLERRELEALCLESGALAVLRKPFRALEIQEIAAQAGLALPKSP 381
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: D8LNV9_ECTSI (Response receiver n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV9_ECTSI)

HSP 1 Score: 291 bits (745), Expect = 8.940e-88
Identity = 179/364 (49.18%), Postives = 221/364 (60.71%), Query Frame = 1 
Query:    1 NSPTVQYQHQVEHQESDLQTLSPASRTPSILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVVNTYCLPKTASAATAAASSTSMPVGLATGSTALPALSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPASPICTGTK----------GGGGGNGLGDESPGVPFCRDPTSSTGQKTKMTVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQL 1062
            N P +  QHQ + +      L+P  RTPSILVVDDSRIS QIA+RSLS+A FHVE+A DGE+GL  L +  SSFDL+LLDVVMPGLDG+E+LTR+KQDP L H+PVA+LSGLE ERLE+LCLQQGA VV+RKP+ AE V++VV+  C  +  +AA                       +PP                                          PP  P    TK          GGGG  GL +     P  R+  SST     M VL+V+DSVISSKLAIRKLR LG + IS ENGRAALD++R  PDR+S VL D++MPVM+G+ELL ++K+DP LR+IP+VVVSSLERR+L
Sbjct:    3 NPPELHEQHQEQDEPPAASGLAP--RTPSILVVDDSRISRQIAERSLSRAKFHVEVAPDGEVGLARLQAQPSSFDLILLDVVMPGLDGVEVLTRVKQDPQLSHIPVAMLSGLESERLEELCLQQGAVVVLRKPLTAEMVIQVVDACCEQREGAAA-----------XXXXXXXXXXXXTPPPSGGGSHSPLRDLPPGVDASASFEHAEAFPSTGAGFAPGVPPPPEEPYPAETKVALGSARTEGGGGGDRGLSES----PSRRESASSTLPTANMAVLVVEDSVISSKLAIRKLRALGCSTISVENGRAALDLMRGDPDRISLVLADVIMPVMDGIELLRIVKDDPILRKIPIVVVSSLERREL 349
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BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A7S3URR6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URR6_HETAK)

HSP 1 Score: 131 bits (329), Expect = 7.260e-32
Identity = 70/116 (60.34%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:  790 KMTVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQLETLCLESGALAVLRKPLNAGEIQSF 1137
            K++VLIVDDS ISSKLA+RKL +LGY  + AENG+ AL +LRRFP     VL+DIVMPVM+GVELL  +K D  LR +PV ++S LE   L  +CLESGA AVLRKP+N  E+Q  
Sbjct:   25 KLSVLIVDDSNISSKLALRKLVSLGYDTMHAENGKVALQLLRRFPGDFDLVLLDIVMPVMDGVELLTTMKADALLRAVPVAMLSGLEDEALAKVCLESGAEAVLRKPVNTDEVQEI 140
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A835ZHY4_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHY4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.880e-31
Identity = 66/123 (53.66%), Postives = 89/123 (72.36%), Query Frame = 1 
Query:   76 RTPSILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVVNTYCL 444
            R  S+LVVDDS ISC++A R+L   N   ++A  GE  L +L  D ++FD VLLD+VMPGLDGIE+L+R++ +P L  LPVA+LSGLED+ L ++CL QGA  V+ KP+ AEDV+  VN + L
Sbjct:   80 RQVSVLVVDDSHISCKLASRALESINLVPKVAYSGEAALMLLKRDPAAFDFVLLDIVMPGLDGIEVLSRIRHNPALARLPVAMLSGLEDKTLAEVCLHQGAVQVLIKPVKAEDVIAAVNRHVL 202
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A7S3URM2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URM2_HETAK)

HSP 1 Score: 128 bits (321), Expect = 1.730e-27
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1 
Query:   88 ILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVVNTYC 441
            ILVVDDS ISC+IA R L K  + V+ A  GE  LE + +    +DL+LLD+VMPGLDGIE+L+++K   HL HLP+ +LSGLED+ L ++CLQQGA  V+ KP+  + V RVV+ +C
Sbjct:  190 ILVVDDSHISCKIAVRQLGKLGYEVDTAFSGEEALEKVGATPHRYDLMLLDIVMPGLDGIEVLSKVKGTAHLQHLPICMLSGLEDQTLAEVCLQQGALEVLLKPLKVDAVQRVVDLHC 307
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A142XR44_9BACT (Polar-differentiation response regulator DivK n=3 Tax=Gemmata TaxID=113 RepID=A0A142XR44_9BACT)

HSP 1 Score: 102 bits (255), Expect = 2.020e-19
Identity = 86/343 (25.07%), Postives = 150/343 (43.73%), Query Frame = 1 
Query:   82 PSILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVVNTYCLPKTASAATAAASSTSMPVGLATGSTALPALSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPASPICTGTKGGGGGNGLGDESPGVPFCRDPTSSTGQKTKMTVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQLETLCLESGALAVLRKP 1110
            P +L+V+D +++  + +R L +  + V  A DG   L +  ++A   DLVL+D+ +P +DG E+  R+K DP    +P+ +LS       ++     G      KP+  + + R +  +          AAA +T+  +  A+ +  + AL                                            T   +P+ TG            + P +   +D T  T +     +L+V+D+  +  +  R+L   GYA + A NGR ALD +         VL DI+MP ++G E+L  +K DP L+ +PV+++S+L+       C+E GA   L+KP
Sbjct:    2 PRLLLVEDEQVNRDLFRRRLERKGYTVLTAEDGASALSLTSNEAP--DLVLMDLGLPDVDGWEVTKRLKTDPVTAAIPIIVLSAHATSDAKERAFAAGCQDFETKPVNWDGLFRKIEEWLAKAQDGTTRAAAEATAQTLEQASSTGVMSALQ-----------------------AIRALPPDTSPAETLLFNPKTAGVTPLPTG------------KHPVLKPPKDETKDTCEVRPKCILVVEDNDANRVMLCRRLNKHGYATVEAANGREALDAVHAHT--FDLVLCDIMMPEVDGYEVLRELKADPDLKALPVIMISALDDMTGVVRCIEMGAEDYLQKP 305
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A0P9EYV0_9CHLR (Response regulatory domain-containing protein (Fragment) n=1 Tax=Kouleothrix aurantiaca TaxID=186479 RepID=A0A0P9EYV0_9CHLR)

HSP 1 Score: 93.6 bits (231), Expect = 5.160e-19
Identity = 45/106 (42.45%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:  799 VLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQLETLCLESGALAVLRKPLN 1116
            VLIVDD++++ KL  R L  LG+   +A +G AAL++LR  PD    VL+D++MP ++G E+L  IK+DP+LR++PV+++++++       C+E GA   L KP N
Sbjct:    4 VLIVDDNLVNRKLLARALADLGHRTSAAADGEAALELLRAEPDTFDLVLLDVLMPRLDGYEVLAAIKSDPALRELPVIMITAVDELDSAIRCIELGATDYLHKPFN 109
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A835ZEX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEX5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.440e-18
Identity = 54/98 (55.10%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:  769 SSTGQKTKMTVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQL 1062
            SST   T++T+L+VDDS ISSKLA+RKL +LG+  + A+NG  AL++LR   + V  VL+DIVMPVM+GVELL +++ D +LR IPVV++S LE + L
Sbjct:   92 SSTVGATRITILVVDDSNISSKLAVRKLASLGHRTVHADNGLNALEMLRSGQE-VDLVLLDIVMPVMDGVELLTILQADEALRHIPVVMLSGLEDKIL 188
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: UPI001A9B94B4 (response regulator n=1 Tax=Desulfonema limicola TaxID=45656 RepID=UPI001A9B94B4)

HSP 1 Score: 97.8 bits (242), Expect = 1.140e-17
Identity = 93/345 (26.96%), Postives = 134/345 (38.84%), Query Frame = 1 
Query:   76 RTPSILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVVNTYCLPKTASAATAAASSTSMPVGLATGSTALPALSPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPPASPICTGTKGGGGGNGLGDESPGVPFCRDPTSSTGQKTKMTVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVLVDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQLETLCLESGALAVLRKP 1110
            R  ++LVVDD   S  +   +L ++ +  E A DG  GLE++     + DLVLLD++MP +DG E+L +MK +  L H+PV + SG  D      C++ GA   + KP   E    ++NT C+      A                                                                               GGG       +SPG+                 +L+VDD  +   L    L   GYA   AENG+ A D++   P     + +D+VMP MNG ELL +IK +     IPV+VVS+ +       C+E GA   L KP
Sbjct:    2 RKYTVLVVDDDMFSLNLMTAALEESGYTAEAAEDGNSGLEIMRE--KNIDLVLLDLLMPVMDGFEVLRQMKSEKSLMHIPVIVTSGEIDPGSIIKCMEIGALDYLTKPCHRE----MLNT-CIENVLRVA-------------------------------------------------------------------------------GGGQIKNRRKDSPGM-----------------MLVVDDDAMYRTLLTISLEERGYAVDQAENGKQAWDMICTAP--YDLIFLDLVMPEMNGFELLELIKTNNKTDHIPVIVVSADDDMGSIVRCIEKGAADYLNKP 241
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Match: A0A482S1V7_9ARCH (Response regulator (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1V7_9ARCH)

HSP 1 Score: 91.7 bits (226), Expect = 5.420e-17
Identity = 42/114 (36.84%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:   88 ILVVDDSRISCQIAKRSLSKANFHVELALDGELGLEMLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDERLEKLCLQQGATVVMRKPMMAEDVVRVV 429
            +L++DDS ++ ++A + L+  +F V +A   + G ++L       +LV LDVVMP +DG+E L  +K+ P + H+PV +LSGLED  L ++CL++GA  ++ KP+  + V+ ++
Sbjct:  115 VLLIDDSPVAARVASKVLATLHFEVIVANSAQTGFDLLMGRKEDINLVFLDVVMPNVDGVECLGWIKECPDVAHIPVYMLSGLEDNMLSEVCLERGAEGMLLKPLKPDLVIDIM 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1533.3953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9C6_9PHAE7.240e-10352.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNV9_ECTSI8.940e-8849.18Response receiver n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S3URR6_HETAK7.260e-3260.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZHY4_9STRA1.880e-3153.66CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A7S3URM2_HETAK1.730e-2753.39Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A142XR44_9BACT2.020e-1925.07Polar-differentiation response regulator DivK n=3 ... [more]
A0A0P9EYV0_9CHLR5.160e-1942.45Response regulatory domain-containing protein (Fra... [more]
A0A835ZEX5_9STRA3.440e-1855.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001A9B94B41.140e-1726.96response regulator n=1 Tax=Desulfonema limicola Ta... [more]
A0A482S1V7_9ARCH5.420e-1736.84Response regulator (Fragment) n=1 Tax=archaeon Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1533contigH-canaliculatus_F_contig1533:14133..20547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.4
Seed ortholog evalue5.3e-57
Seed eggNOG ortholog2880.D8LNV9
KEGG koko:K12127,ko:K12129,ko:K12130,ko:K16240
KEGG Pathwayko04712,map04712
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsCOG5641@1,KOG1601@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionResponse receiver
Ec32 orthologEc-08_005640.1
Exons9
Model size2324
Cds size1074
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.7678125-UTR-H-canaliculatus_F_contig1533:14132..142971622929270.7678125-UTR-H-canaliculatus_F_contig1533:14132..14297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1533 14133..14297 +
1696845744.5553823-UTR-H-canaliculatus_F_contig1533:14132..142971696845744.5553823-UTR-H-canaliculatus_F_contig1533:14132..14297Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1533 14133..14297 +
1622929270.7785392-UTR-H-canaliculatus_F_contig1533:14816..148461622929270.7785392-UTR-H-canaliculatus_F_contig1533:14816..14846Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1533 14817..14846 +
1696845744.567153-UTR-H-canaliculatus_F_contig1533:14816..148461696845744.567153-UTR-H-canaliculatus_F_contig1533:14816..14846Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1533 14817..14846 +
1622929270.8885813-UTR-H-canaliculatus_F_contig1533:19492..205471622929270.8885813-UTR-H-canaliculatus_F_contig1533:19492..20547Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1533 19493..20547 +
1696845744.6656482-UTR-H-canaliculatus_F_contig1533:19492..205471696845744.6656482-UTR-H-canaliculatus_F_contig1533:19492..20547Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1533 19493..20547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929270.7883976-CDS-H-canaliculatus_F_contig1533:14846..149211622929270.7883976-CDS-H-canaliculatus_F_contig1533:14846..14921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 14847..14921 +
1696845744.5763304-CDS-H-canaliculatus_F_contig1533:14846..149211696845744.5763304-CDS-H-canaliculatus_F_contig1533:14846..14921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 14847..14921 +
1622929270.800347-CDS-H-canaliculatus_F_contig1533:15553..156351622929270.800347-CDS-H-canaliculatus_F_contig1533:15553..15635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 15554..15635 +
1696845744.5885742-CDS-H-canaliculatus_F_contig1533:15553..156351696845744.5885742-CDS-H-canaliculatus_F_contig1533:15553..15635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 15554..15635 +
1622929270.8135881-CDS-H-canaliculatus_F_contig1533:16029..162811622929270.8135881-CDS-H-canaliculatus_F_contig1533:16029..16281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 16030..16281 +
1696845744.5975697-CDS-H-canaliculatus_F_contig1533:16029..162811696845744.5975697-CDS-H-canaliculatus_F_contig1533:16029..16281Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 16030..16281 +
1622929270.8235974-CDS-H-canaliculatus_F_contig1533:17020..172021622929270.8235974-CDS-H-canaliculatus_F_contig1533:17020..17202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 17021..17202 +
1696845744.6070418-CDS-H-canaliculatus_F_contig1533:17020..172021696845744.6070418-CDS-H-canaliculatus_F_contig1533:17020..17202Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 17021..17202 +
1622929270.8357875-CDS-H-canaliculatus_F_contig1533:17638..177151622929270.8357875-CDS-H-canaliculatus_F_contig1533:17638..17715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 17639..17715 +
1696845744.6167183-CDS-H-canaliculatus_F_contig1533:17638..177151696845744.6167183-CDS-H-canaliculatus_F_contig1533:17638..17715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 17639..17715 +
1622929270.8537683-CDS-H-canaliculatus_F_contig1533:18324..184601622929270.8537683-CDS-H-canaliculatus_F_contig1533:18324..18460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 18325..18460 +
1696845744.6271973-CDS-H-canaliculatus_F_contig1533:18324..184601696845744.6271973-CDS-H-canaliculatus_F_contig1533:18324..18460Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 18325..18460 +
1622929270.8673904-CDS-H-canaliculatus_F_contig1533:18930..189941622929270.8673904-CDS-H-canaliculatus_F_contig1533:18930..18994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 18931..18994 +
1696845744.6384537-CDS-H-canaliculatus_F_contig1533:18930..189941696845744.6384537-CDS-H-canaliculatus_F_contig1533:18930..18994Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 18931..18994 +
1622929270.8780172-CDS-H-canaliculatus_F_contig1533:19286..194921622929270.8780172-CDS-H-canaliculatus_F_contig1533:19286..19492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 19287..19492 +
1696845744.651798-CDS-H-canaliculatus_F_contig1533:19286..194921696845744.651798-CDS-H-canaliculatus_F_contig1533:19286..19492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1533 19287..19492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1533.3953.1prot_H-canaliculatus_F_contig1533.3953.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1533 14847..19492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1533.3953.1

>prot_H-canaliculatus_F_contig1533.3953.1 ID=prot_H-canaliculatus_F_contig1533.3953.1|Name=mRNA_H-canaliculatus_F_contig1533.3953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=358bp
MLHSDASSFDLVLLDVVMPGLDGIEMLTRMKQDPHLCHLPVAILSGLEDE
RLEKLCLQQGATVVMRKPMMAEDVVRVVNTYCLPKTASAATAAASSTSMP
VGLATGSTALPALSPPSPSRSSPSPSVERARATEGASAAAAAVAMAAAAA
TATATSDTPPASPICTGTKGGGGGNGLGDESPGVPFCRDPTSSTGQKTKM
TVLIVDDSVISSKLAIRKLRTLGYAAISAENGRAALDILRRFPDRVSFVL
VDIVMPVMNGVELLHVIKNDPSLRQIPVVVVSSLERRQLETLCLESGALA
VLRKPLNAGEIQSFAVQVGLTLPTPPQVTTRPVHPSVVTVTAAAAAAVAA
AARATAV*
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mRNA from alignment at H-canaliculatus_F_contig1533:14133..20547+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1533.3953.1 ID=mRNA_H-canaliculatus_F_contig1533.3953.1|Name=mRNA_H-canaliculatus_F_contig1533.3953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6415bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1533:14133..20547+ (Hapterophycus canaliculatus Oshoro5f female)
AATTCACCAACGGTTCAGTACCAGCACCAGGTCGAGCACCAGGAAAGCGA
CCTACAGACCCTGAGCCCCGCATCTCGCACGCCGTCCATACTGGTTGTTG
ACGACAGTCGCATTTCATGCCAAATAGCCAAACGCAGCTTGTCGAAGGCC
AACTTTCACGTGGAGGTGAGAGACAAGAGGGTAACGAGGAATGGGTACCA
ATAGTGACAGCAACAGCAACAAGTAGGTTTCGATGGCCAGAGGTCCGTCC
GACTGGGAGCAACTAAACGGGAGACGTTGCAGATCGATAGTCGTACTCAG
GAATATATGTTTGCCTGACGTGTCGCTACCCCCCCTCCTCCGCGCGAACA
CGGTATACTTTATTTGGAGCTTCTGATCCGTTCGATCCTAGGAGCAAGAA
GAGCTTGTACAAAGCTCGGATACACGTCAAGGTTTGTCCTGGCAGGGCTC
TGACAAGTGCCACCTCTGCTCCAATTTCGGTACGGAAACCCTTACGCTTC
TGGTGGATAGGCGACCCGTGCCCATAGCTAGTTCGGGAAGATCGAGCTCT
CTACTACCCTCGGGCGACCGTGTTTCTGACACGGGCATATATTTTCAACC
ACACACCTTTTGATAAAGGCAGGCAAGGATCAATCATAGCCGCACCTTCA
CCCCTTCCCGTCGTTTGTGTTTCTCCGCCAAAAGTTGGCCCTGGATGGCG
AGCTAGGATTGGAGATGCTTCATTCCGACGCGTCGTCTTTCGATCTGGTC
CTCCTAGACGTCGTCATGCCTGGGCTTGACGGTATAGAGGTGCGACTTCC
TGCAGTCCAAGACAAGGTGCTGACGATGTCGTCGCAGCTTTATTCTTCCT
GCATGCATGTACTCGTCCTGAAGTACAACCCGTCGCTTTCGAGGCCCATA
GTGCTTGGAAGCGTTGGGTGTATTTTCAGCTCGTTCAATGTTTTATGCAA
ACCAAGTTTGGCATTTTGAAGGCTCATTCATTGCATGCCATCAAAGTTGG
TTATAGAACTATTGCAAGCGTTGTTTATTTGTTGTCGAAGGTCGGTTTGA
CAGTGCATTCCCCCCCCTCTAAGTTGCACCATTCATCGTCCTGTACCTCG
TACATCCTCTGCACGACCATATTGACGTCATTGCAATGGAATTGCCGAGA
CTCTGATTCAGGACCGCTCACTAAGAAGCATTTGCCACTCGGCGCCACGA
ATGACGTTCGCCCGCTCAAGACTAAATATACCTCTCCCCCGCCCTACCGC
AGTGTTGATGGGCGATCCCACGTTCCTCCTTTGTTTTACCTCACAATAAA
GCTAACGAAGCGTCATCCACCCACTTCCGGGACAGTAACAACCGGAAAAA
AATGAGCCCTGAAAAAAGCGTTTTCTGTGGTGTATTGTCCCGTCCCCTGG
TCCCGGCCCCATCGGCTGCAGATGCTGACTAGAATGAAACAGGACCCGCA
CCTCTGCCACTTGCCGGTGGCGATTTTGTCCGGTCTTGAGGACGAAAGGC
TCGGTGAGATAATGCGCGAATAGACCACCTAGTAGGGTTTCGTTGCTGCT
TTCACCGTCTGCGCCAAGCGTCAAGTCTCTTCATGGCCTCGGGTGCGAAG
ATCGATTTCCTGCGCTTAGTTTATGAGTTTGATTTGTCTGAAGCTGGGCG
GTTGCGTAAATAGCGGATATTTTCCACCACTATTTATTCTTTCCTCGACG
CGTGCTCAAATAAATATGGCTGTTTCGTTCGTTCTCGCTACCCTTCCATC
TATAATGGCAGTAATTGTTCTTCAACGCCGTTCCGCGCCTGGTATGTGAT
CACGGGCTAATTTATTGCCAGCGAGCCTATGCCAGCACCGTCTGTTGTAT
ACCATTGACCCTCCCTTCCGCGCCGTTTTTTGGTTTGCATTTTTCAGAGA
AGCTTTGCCTGCAACAGGGGGCGACGGTGGTGATGCGAAAGCCCATGATG
GCCGAGGACGTGGTCCGCGTTGTGAATACCTACTGTTTACCTAAGACGGC
ATCAGCAGCAACAGCGGCCGCGAGCTCGACAAGCATGCCCGTCGGGCTAG
CGACGGGAAGCACTGCGCTTCCGGCATTGTCGCCGCCGTCCCCGTCACGG
TCATCGCCATCTCCTTCCGTTGAAAGAGCTCGCGCTACGGAGGGGGCTTG
TGGTGTCGATGGTAGCGTTTGTGACGGCGTTTGTACTCGGGGATGTGGTT
GTGTTGACTCTGTTCGTGGTGATGGTGTTTGTGGCGGTGGCGGTGATCGT
GTTGGTGGTGTAGGTGGTGATGATGGAGGTGACGATGGTAGTGTTTGTGG
TGCTGTGGTCGCTGGTGGTGAAGATGGAGCTGAAGGCGGTTTCAGCGATG
GTTGCGATGGCTGTAACAGCGCATCACAATCGTGTTCATCGGGCCAAGAT
ACACAGCTGGAGGGGAGGGCGATACAGGTGAACAGGGAGCGGAGAGAGTC
TTAGATCCCAAAAGGTGCTGGAGCCCATGGCCGAACAAGTGGCAAGATGC
CGTCGAAAGTAGAGATGGTGGAGGCGGGCGGGCAACAGGAATTTGAGGCA
CCAACACCTAGAACCTTTCTTTCTATCTTCCCCTCCCTCGCCTACCCGCT
GATGTCTGCTGTACAATTTGAGCTTGCGTGCTCTTCCACCAAAGTCCCTG
CGGTCGCCCGCTCCATCCGCGTTGGGGAAGATACCATATCCTTGCAGCGT
TGTTTTGTGGTAGAAGATGGTCACGCAGTGCTCCGCCCCCCTTCCCCTCC
TCTCTAATTTCACACGCTTCGTTTTTTAGCAGGGTATCACGGCGACTGAA
GCGGATGGACAACACGCACCTTCTTCTCACCCTGAAACAACGGGCCGCGC
CGTAACAGCAGTTGCGGCAGCCACGGTACCGGCCACAGCAGCAGCAGCAG
CAGCAGTAGCCATGGCAGCGGCAGCAGCAACAGCAACAGCAACGTCAGAC
ACGCCCCCAGCCTCCCCAATTTGCACAGGCACGAAGGGTGGCGGCGGAGG
CAACGGCCTGGGAGATGAATCACCGGGGGTTCCGTTCTGTAGAGACCCAA
CATCGTCGACGGGACAAAAGGTGGGTTGGCGCGAAACGTCCATGTGTTGA
TGCACGGCAGAAGCGAGTGTGTGTTACCTGGCGCGGAAAAGGGAAGATGG
GGCACAGGAACATCGTGATTTCAAAATGGAAAGTCGAGGGGCGAAAAGCG
ACGGGGAGAGTCTTCTGCCTGCTTCGAGCCGGGTGGGGAGTGCTGAAAGG
GCGGTACAGGGGGTACAGCTGACACGGCTCCTTTACTTCGCAAGGGGATC
GCACCGTTGACGTCTGTGCCTGAAGCACGTGGCCACTCCTTCGTCATCTC
TTCGATAATCAGACGGCCTCCAGTATCCGGCGTTTCTGCACGACACTAAT
CGATGCAGCTACGGCAACAGCAGCAGTGATGTTGAAATCCTCATCTGAAT
TGTGTCGATTATGCCCGCCGTGGTTGAACTCCCTTGTCATCCAGGCCATC
TCGAAGACGAAGATGACCGTCTTGATCGTGGACGACTCGGTTATTTCTAG
CAAGCTCGCCATTCGTAAGCTCCGGACGCTAGGGTGAGAAACGTCATCGC
GTTTTTTCAATCAAAAGGGCTAGGAACTCCGTTATGCGCCCTCGCCGGTG
GTACGAGTGGGTGCTGCATTTCCCACAGCTTCCGCCCCTTTCGACTGCTT
GCATTTCAGCACTCGTAACCTCTCGACCCAAGACATCCTCCACGGCGGGG
ACGCTGGCGAGAGGACATATTGCAAGACCTTCGGGCTCGGTGTATTTCAT
CGTACGTCCGGTCGACAGATGTGTCTGACACTCTGCGGATAGGGTTTGGG
GCACCAGTTCTGGCTCCGTATTCTGCGGACACCATGCATGCACCGTCTTG
TGCTTGCCGCTCTTTTGATACTTTCCAGCGAAGCATGGCTCGCGGCTGAG
TGCCTAGCTTAGCAAAAATAGACAAACCGACACCGATTAAGCACGGCGAA
GTGATTCTGCTCGCACTTTAGAACGCGCAGTGACACCGGCCGCATTTTCG
ATCCAAGGTGACGGGACCGTGCCGCGTACGGAGTCCGGCTCGGGAATCTG
CTGCACAACTCTTAAATGGGGCTGCAAACACCGGCACGATGGCAACAAAA
CGCGAACCCCTTGGCGTGTGTCGGCCGTGATCGATTGGTCAGGTACGCGG
CGATCAGTGCGGAGAACGGCCGAGCGGCACTCGACATCTTGCGGAGATTC
CCCGACCGGGTTAGCTTCGTGCTCGTCGACATCGTCATGCCGGTTATGAA
CGGCGTCGAACTCTTGCACGTCATCAAGGTGAGTGACCGGGCTCGGACTC
GCCAAACTCGCGCAGGCGCGTGGTTCTTAACAGCACGGGGCGTGGCTCAT
CGACGGATTTGTGTCGCTGGTCCGTTCGTCTACCGACGAGGCCCTCACGC
AACGGATGCTACGAGGACAGTTCGGAAAGATCAAATCGCGCCGCCGAAAT
TCCATGGCGGTCGTTATTCTACGAACGTCTGGCGACGAAGAGCGAAGAAG
TACTTGGGTCCCTGTCGATGCGTAGTCCGTCCAGAGTTTTACGCGATCGC
TGCCGGATCGATCAAGGGGCGTGTTACATCGGGTATGGTCGGTAAGTATG
GTGAGCGAATCGCAAGGCTTTGGCAATATGCGCAAGGGTAGTCGGCTTTG
CCTCTGCCGTATCTCTGACGCACAACCCGTACCCTGCTGCGTCTTGCCGC
CTGTCGTCTGTTTCGCTGATGTCGTTCGCTTCGCTGCTCCTCCGCCAGAA
TGACCCTAGCCTCCGTCAGATACCGGTAGTGGTGGTGTCAAGTCTTGAGA
GACGGCAGCTCGGTAAGCAACGAGTCATCACCAAAGGCAGATTAGTTCTT
GAGAATGAAACTACTCTCGTCTTTTCTTCTGCGTTATCTGGATACCAGGT
GTCTCCCAAAATCGGGCATACACTTCGCTATTTGTTGAGGACCAGAAGGT
GCACTTCTGCGCAAAGCAGATCGGCCGTTGTCGATCGTCCCCTACGTGGC
GATTGGCTATGCATCCCAAAATTTTGGTTGGGTCTCTTGTCCACTAAGGC
AACGACTCTTCCTTTCCTGCCCATTCATCTACCTTTCTGTCTGTCTTTGT
GCAGAGACGTTGTGTTTGGAGTCCGGAGCACTGGCCGTGCTGCGGAAACC
CCTGAACGCGGGTGAGATCCAAAGCTTCGCGGTGCAGGTGGGCCTCACGC
TCCCGACACCGCCTCAAGTGACAACACGGCCGGTTCATCCTTCTGTGGTC
ACGGTGACAGCGGCGGCAGCGGCAGCAGTAGCAGCAGCAGCTCGTGCGAC
GGCGGTGTGAAATCATGTTACTTGGTAACGCTTTACGCCACACCTCTCTC
CCCATCTGGTGACGTCAGCCTACCCTGTGCGTTGAACCTCGTTGTTGCTT
CGACCACTCGACGAGATAGTACAGAAAAGGGCGGTTATTCGAGCAATGCG
GGTAGACGGGAAACGATTTCGCTGCCGAGCGCATAGTCTCGTTCTTCAGT
GTCTCGGTAGCTTCATGCCGGCATGTTTGGTGCTCGTATGTCATCAGCCT
GTGTTCTGGGTCGTGTCATCAGCCTTTGTGCTGGGTCGCGCCCGACTGTC
GCATGCATGTTTCACACACCAATCATCGCCTGTCCATGTGGCACGCCGGT
TGCTGAAAACGGGTCGCGTAGAGTTGCTCGTCGCCGAGTTGTTTCTTCCA
AGTGTTTTCGCGACGAGCGCCGGGTTCAGAGCCGATCCGTTAGCTTCTGC
GCTGCAAGGGGCCATCATATACCGAAGAATATAGTGATCTGTTCTTCGAT
TGCTCTGGGTAGGGACGTCGTACAGATACATAGCCCGAGGAAAGAAGGGG
CGGCAGGTGACGGGGCGGTTTTTCTATTGAGAAGACTGTTGTTTCATCAT
TCCTTGGTTTCAGCAATTGATACGTTGGTAAATGCGCGAGAGCCCCCCCC
CCCAAACTTCTGTTTCTTCTGAAAGCAAGCCATTAATTAGCTTGCCTTTT
GCTTTTCTGCTCTCCGACGTATGTTACGTTGTAGGAGTGGTATTTTAACG
GAAACTTTGGTAGTGCGCGAGATCTCAGAGGAGTCCCCTTTCATTTAGAT
GGTTGCGCCAGGGGCCCTTCACCTCTTTGCTCTCCGAAGAATACAGTGGT
TGAAAATATCAAAAGGTGAGGCTCCACCAAAGATCGATGCGCAGCGAAGA
CTTGATGTCAGTTTTTTGCCTTGCGTCGTGCAGAGTGCAGGTGCGGATCC
AGATGGACTCGCCGAGCTGCAGTGTACGGAAGGAATTAGTGAGGGTCGTT
TACTTTCTTCGTGATTCCCCTGAAGTACTACTTCGTGGTAGGGCCCAGAG
CAAGTACAGAATACT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1533:14133..20547+

>mRNA_H-canaliculatus_F_contig1533.3953.1 ID=mRNA_H-canaliculatus_F_contig1533.3953.1|Name=mRNA_H-canaliculatus_F_contig1533.3953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2148bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1533:14133..20547+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTCATTCCGACGCGTCGTCTTTCGATCTGGTCCTCCTAGACGTCGT
CATGCCTGGGCTTGACGGTATAGAGATGCTTCATTCCGACGCGTCGTCTT
TCGATCTGGTCCTCCTAGACGTCGTCATGCCTGGGCTTGACGGTATAGAG
ATGCTGACTAGAATGAAACAGGACCCGCACCTCTGCCACTTGCCGGTGGC
GATTTTGTCCGGTCTTGAGGACGAAAGGCTCGATGCTGACTAGAATGAAA
CAGGACCCGCACCTCTGCCACTTGCCGGTGGCGATTTTGTCCGGTCTTGA
GGACGAAAGGCTCGAGAAGCTTTGCCTGCAACAGGGGGCGACGGTGGTGA
TGCGAAAGCCCATGATGGCCGAGGACGTGGTCCGCGTTGTGAATACCTAC
TGTTTACCTAAGACGGCATCAGCAGCAACAGCGGCCGCGAGCTCGACAAG
CATGCCCGTCGGGCTAGCGACGGGAAGCACTGCGCTTCCGGCATTGTCGC
CGCCGTCCCCGTCACGGTCATCGCCATCTCCTTCCGTTGAAAGAGCTCGC
GCTACGGAGGGGGCTTAGAAGCTTTGCCTGCAACAGGGGGCGACGGTGGT
GATGCGAAAGCCCATGATGGCCGAGGACGTGGTCCGCGTTGTGAATACCT
ACTGTTTACCTAAGACGGCATCAGCAGCAACAGCGGCCGCGAGCTCGACA
AGCATGCCCGTCGGGCTAGCGACGGGAAGCACTGCGCTTCCGGCATTGTC
GCCGCCGTCCCCGTCACGGTCATCGCCATCTCCTTCCGTTGAAAGAGCTC
GCGCTACGGAGGGGGCTTCAGCAGCAGCAGCAGCAGTAGCCATGGCAGCG
GCAGCAGCAACAGCAACAGCAACGTCAGACACGCCCCCAGCCTCCCCAAT
TTGCACAGGCACGAAGGGTGGCGGCGGAGGCAACGGCCTGGGAGATGAAT
CACCGGGGGTTCCGTTCTGTAGAGACCCAACATCGTCGACGGGACAAAAG
CAGCAGCAGCAGCAGCAGTAGCCATGGCAGCGGCAGCAGCAACAGCAACA
GCAACGTCAGACACGCCCCCAGCCTCCCCAATTTGCACAGGCACGAAGGG
TGGCGGCGGAGGCAACGGCCTGGGAGATGAATCACCGGGGGTTCCGTTCT
GTAGAGACCCAACATCGTCGACGGGACAAAAGACGAAGATGACCGTCTTG
ATCGTGGACGACTCGGTTATTTCTAGCAAGCTCGCCATTCGTAAGCTCCG
GACGCTAGGACGAAGATGACCGTCTTGATCGTGGACGACTCGGTTATTTC
TAGCAAGCTCGCCATTCGTAAGCTCCGGACGCTAGGGTACGCGGCGATCA
GTGCGGAGAACGGCCGAGCGGCACTCGACATCTTGCGGAGATTCCCCGAC
CGGGTTAGCTTCGTGCTCGTCGACATCGTCATGCCGGTTATGAACGGCGT
CGAACTCTTGCACGTCATCAAGGTACGCGGCGATCAGTGCGGAGAACGGC
CGAGCGGCACTCGACATCTTGCGGAGATTCCCCGACCGGGTTAGCTTCGT
GCTCGTCGACATCGTCATGCCGGTTATGAACGGCGTCGAACTCTTGCACG
TCATCAAGAATGACCCTAGCCTCCGTCAGATACCGGTAGTGGTGGTGTCA
AGTCTTGAGAGACGGCAGCTCGAATGACCCTAGCCTCCGTCAGATACCGG
TAGTGGTGGTGTCAAGTCTTGAGAGACGGCAGCTCGAGACGTTGTGTTTG
GAGTCCGGAGCACTGGCCGTGCTGCGGAAACCCCTGAACGCGGGTGAGAT
CCAAAGCTTCGCGGTGCAGGTGGGCCTCACGCTCCCGACACCGCCTCAAG
TGACAACACGGCCGGTTCATCCTTCTGTGGTCACGGTGACAGCGGCGGCA
GCGGCAGCAGTAGCAGCAGCAGCTCGTGCGACGGCGGTGTGAAGACGTTG
TGTTTGGAGTCCGGAGCACTGGCCGTGCTGCGGAAACCCCTGAACGCGGG
TGAGATCCAAAGCTTCGCGGTGCAGGTGGGCCTCACGCTCCCGACACCGC
CTCAAGTGACAACACGGCCGGTTCATCCTTCTGTGGTCACGGTGACAGCG
GCGGCAGCGGCAGCAGTAGCAGCAGCAGCTCGTGCGACGGCGGTGTGA
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