mRNA_H-canaliculatus_F_contig15.3762.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig15.3762.1 vs. uniprot
Match: D7FYS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS2_ECTSI) HSP 1 Score: 450 bits (1158), Expect = 1.130e-135 Identity = 263/452 (58.19%), Postives = 319/452 (70.58%), Query Frame = 2
Query: 2000 MKTKLGDFEGTRYARSKLKLTVSHEWAQQEYRTGIASSGRVSVRITETEFIRRRLGGGSLYAMLEQESRDYLRVGPFTDADMELLGKSFAEVQAHKELPP-RATPTSDMAAAASSKATGTSKDKASTAPTMKTGKA----GGGKAAAIAAAGAKDAAAGAADSGSISWADRLRDFQIDLPASTSFSGLAPDSADEDSLAAGVGKGXXXXXXGSSLDAGEVELQGGGKDDDPLAWDGVGVDPLTVLHHRKHFDVRCREYEALNNSSKKDKTNVLMGRTHTIHQEHTSIISAKRGTLEGTLQNVRQQLNGREEQLRHVHIDQRAVNPLDTAVVARLNENAAMMRTRVAEKKVQMAMIMDEANKVLQWEQTKELARREAINHAAEMHGHGGSFTAGASRERNELMQCLVAQKANIMLLSTFCKLRGPWLAPPEYVEAGRPMPATAATASSAETED 3340
MKT L +F+GTRYARS+LK T++HEWA+QEYRTGIA G+V +TE EF+RRR+ GGSLYA+LEQESRDYLRVGPFTDAD+ELLG SFA+ QA KELPP A P D GK AA A AGA AA+ G SWADRLRDFQID+PAS ++ GLA DS+ G G G + A + G ++DD AWDG+GVD TV+ HR+ FD+RCR YEALN +S+ DKTN L+ +TH + Q+H +I++AKR TLEGTLQNVRQQLNGRE+QLRHVH++QR VNPLDT VVA LNE+ A + TRVAEKKVQMAMI+DEANKV+QWEQT ELARREA++HAA+MHGHGG F G+++ERNEL+Q +++QK NIMLLSTFCKLRGPWLAP YV R + AA ++ A E+
Sbjct: 1 MKTVLPEFQGTRYARSRLKQTLAHEWARQEYRTGIAL-GQVDRGMTEMEFVRRRVEGGSLYALLEQESRDYLRVGPFTDADVELLGMSFAQAQASKELPPPAAAPKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGKDAAAAKAGA------AAEGGVASWADRLRDFQIDIPASATYDGLASDSS--------RGGGAADRTDGQVV-AEAAQKGGSQQEDDASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEKTHRLRQDHAAIVAAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPLDTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREAMHHAADMHGHGGGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWLAPSGYVRGKRSVSDGAAGSAVAAAEE 436
BLAST of mRNA_H-canaliculatus_F_contig15.3762.1 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI) HSP 1 Score: 117 bits (293), Expect = 7.640e-27 Identity = 62/83 (74.70%), Postives = 70/83 (84.34%), Query Frame = 2
Query: 665 MVLKHAQLHGEKRLKSGAYLHALAED-SLAQEAGLVPRDRLVLVEGLDVKMLPFDRIVGLIRRADFPLTLVWSRERAAGQAVS 910
MVLKHAQ+ GE+RLK GAYL LAE SLAQ+ GL P+DRL+LVEGLDVK LPFDRIVGLIR+A FPLTLVWSR+R AG A +
Sbjct: 1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGIAAT 83
BLAST of mRNA_H-canaliculatus_F_contig15.3762.1 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.700e-23 Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 2
Query: 614 ERFEVVLSKPSNKQKLGMVLKHAQLHGEKRLKSGAYLHALAED-SLAQEAGLVPRDRLVLVEGLDVKMLPFDRIVGLIRRADFPLTLVW 877
+RFEVVLSKPS QKLGMVLKHAQ+ GE+RLK GAYL LAE SLAQ+ GL P+DRL+LVEGLDVK LPFDRI G R D T V+
Sbjct: 25 DRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI-GERRATDSSRTRVY 112 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig15.3762.1 >prot_H-canaliculatus_F_contig15.3762.1 ID=prot_H-canaliculatus_F_contig15.3762.1|Name=mRNA_H-canaliculatus_F_contig15.3762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1199bp MVLKHAQLHGEKRLKSGAYLHALAEDSLAQEAGLVPRDRLVLVEGLDVKMback to top mRNA from alignment at H-canaliculatus_F_contig15:61328..73626- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig15.3762.1 ID=mRNA_H-canaliculatus_F_contig15.3762.1|Name=mRNA_H-canaliculatus_F_contig15.3762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=12299bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:61328..73626- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:61328..73626- >mRNA_H-canaliculatus_F_contig15.3762.1 ID=mRNA_H-canaliculatus_F_contig15.3762.1|Name=mRNA_H-canaliculatus_F_contig15.3762.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=7194bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:61328..73626- (Hapterophycus canaliculatus Oshoro5f female)back to top |