mRNA_H-canaliculatus_F_contig15.3755.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15.3755.1
Unique NamemRNA_H-canaliculatus_F_contig15.3755.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.290e-45
Identity = 113/210 (53.81%), Postives = 138/210 (65.71%), Query Frame = 2 
Query:   68 MQRLGSSVRM--CRNINIRSSCGRCFST-SSGPEHDDYWAAAKTEAQATPAYQQAASAAASNPAP-PPAPDVDQWATPGNYTPSTRRMPMGDAYGPSATSRVHEGRSMPPSQYTNTSTQLNRQS------EPAFDMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDI-QLKEQYSGM 664
            MQR G S R     ++ I SS  R  S+ SSGPEHDD+W AAKTEAQATPAYQQAA A A+ P P  P    D+WA PG  +P T  MPMG+AY PS++S+++ GRS   S    +S   N  S       P FDM+SS HLSPV+QVDVRSF G+ LVDIRQYF    G  +P+KKGI+LT+ QWRRLQ AM +ID +I  L+EQ   +
Sbjct:    1 MQRFGVSARRRGFPSLLIHSSSSRKLSSFSSGPEHDDFWTAAKTEAQATPAYQQAA-ANATAPTPWTPTATGDRWAQPGGPSPGT--MPMGEAYKPSSSSKMYGGRSS--SSNGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 205
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.830e-18
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 2 
Query:  443 MESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDI-QLKEQYSGM 664
            M+SSMHLSPV+Q DVR F G+ LVDIRQYF    G   P+KKGI+LT+ QWRRLQ AM +ID +I  L+EQ   +
Sbjct:    1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSL 75
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A8D8C5_ARTSF (RNA polymerase II transcriptional coactivator n=1 Tax=Artemia franciscana TaxID=6661 RepID=A8D8C5_ARTSF)

HSP 1 Score: 64.7 bits (156), Expect = 3.630e-9
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  440 DMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDI 637
            D E +  L   + + VRSF G+T VDIR+Y+    G  +P KKGISL+V QW+++Q AM E+D  +
Sbjct:   40 DEEPTWTLDKKRFLKVRSFKGKTFVDIREYYEDASGNLMPGKKGISLSVQQWKKVQEAMDEVDEAL 105
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A0A1X7U2Q5_AMPQE (PC4 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U2Q5_AMPQE)

HSP 1 Score: 63.9 bits (154), Expect = 7.500e-9
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 2 
Query:  440 DMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDI 637
            D E  + LS  + V+VR+F G+ ++DIR+Y+V+  G   P KKGISL+V QW +L+ AM  ID  I
Sbjct:   44 DTEELIPLSAKRFVNVRTFKGRIMIDIREYYVNDDGENRPGKKGISLSVDQWEKLKEAMETIDERI 109
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A0A2G8JPM7_STIJA (Activated RNA polymerase II transcriptional coactivator p15 n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JPM7_STIJA)

HSP 1 Score: 62.4 bits (150), Expect = 2.670e-8
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:  440 DMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDI 637
            D E    LS  K V+VR F G+ L+DIR+Y+   GG   P KKGISLTV QWR+L+  + EI+  I
Sbjct:   45 DQEHMYALSRQKFVNVREFRGRILIDIREYY-DAGGEMKPGKKGISLTVEQWRKLEEKVDEINDSI 109
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A0A7M7G0M9_STRPU (PC4 domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7G0M9_STRPU)

HSP 1 Score: 62.0 bits (149), Expect = 3.830e-8
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:  440 DMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDIQ 640
            D      LS  + V+VR F G+ L+DIR+Y+    G  LP KKGISLTV QWR+L + + +ID  I+
Sbjct:   46 DTSEMFSLSRQRFVNVREFRGKVLIDIREYYEKEVGDLLPGKKGISLTVDQWRKLVSQVDDIDSRIE 112
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: UPI001ED87873 (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87873)

HSP 1 Score: 61.6 bits (148), Expect = 4.490e-8
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 2 
Query:  452 SMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDI 637
            S HL  +K   VR+F G+  VDIR+Y+ S G    P KKGISL+V QWRR++  M EID  I
Sbjct:   46 SWHLEKMKYAKVRTFQGKVYVDIREYYQSDGKMK-PGKKGISLSVDQWRRIKELMPEIDEAI 106
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A0A4S4L2N3_9AGAM (PC4 domain-containing protein (Fragment) n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4S4L2N3_9AGAM)

HSP 1 Score: 64.3 bits (155), Expect = 6.840e-8
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:  437 FDMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEID 628
            +D E  + L   K++ VR+F GQTL+DIR+Y+  PG    P KKGISLTV QW+ L  +M  ID
Sbjct:  169 YDGEQFIDLGKKKRITVRNFKGQTLIDIREYYGDPGDEK-PGKKGISLTVEQWKNLTQSMPSID 231
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: A0A0U2TG75_ACAPC (Activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Acartia pacifica TaxID=335913 RepID=A0A0U2TG75_ACAPC)

HSP 1 Score: 59.7 bits (143), Expect = 2.590e-7
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 2 
Query:  446 ESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGA-TLPSKKGISLTVAQWRRLQAAMGEIDHDI 637
            + S HL   K V VRSF GQT +DIR+Y+V      T P KKGISL   Q+++L+  + EIDH +
Sbjct:   52 DPSWHLGRNKHVVVRSFKGQTYIDIREYYVDKNTMDTKPGKKGISLNCEQYQKLKTILDEIDHAL 116
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BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Match: UPI001BB2BB0F (activated RNA polymerase II transcriptional coactivator p15-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2BB0F)

HSP 1 Score: 58.2 bits (139), Expect = 7.760e-7
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 2 
Query:  440 DMESSMHLSPVKQVDVRSFMGQTLVDIRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDIQ 640
            D  +   LS  + V+VR F G+ L+DIR+Y+    G   P KKGISLTV QWR+L   + +ID  I+
Sbjct:   42 DTSNMFSLSRQRFVNVREFRGKVLIDIREYYEPEVGDLRPGKKGISLTVDQWRKLVNQIDDIDARIE 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB71_9PHAE1.290e-4553.81PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS7_ECTSI6.830e-1860.00PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A8D8C5_ARTSF3.630e-945.45RNA polymerase II transcriptional coactivator n=1 ... [more]
A0A1X7U2Q5_AMPQE7.500e-946.97PC4 domain-containing protein n=1 Tax=Amphimedon q... [more]
A0A2G8JPM7_STIJA2.670e-850.00Activated RNA polymerase II transcriptional coacti... [more]
A0A7M7G0M9_STRPU3.830e-846.27PC4 domain-containing protein n=1 Tax=Strongylocen... [more]
UPI001ED878734.490e-851.61activated RNA polymerase II transcriptional coacti... [more]
A0A4S4L2N3_9AGAM6.840e-850.00PC4 domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A0U2TG75_ACAPC2.590e-747.69Activated RNA polymerase II transcriptional coacti... [more]
UPI001BB2BB0F7.760e-744.78activated RNA polymerase II transcriptional coacti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15contigH-canaliculatus_F_contig15:38111..39815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score65.1
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog7209.EFO24293.1
EggNOG free text desc.Transcriptional Coactivator p15 (PC4)
EggNOG OGs1KX3K@119089,3A20Q@33154,3BQG5@33208,3DBFI@33213,40EQQ@6231,KOG2712@1,KOG2712@2759
COG Functional cat.K
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Ec32 orthologEc-19_002360.1
Exons1
Model size1705
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15.3755.1prot_H-canaliculatus_F_contig15.3755.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15 38178..38813 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.8789454-UTR-H-canaliculatus_F_contig15:38110..381771622929240.8789454-UTR-H-canaliculatus_F_contig15:38110..38177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 38111..38177 +
1696845731.8441174-UTR-H-canaliculatus_F_contig15:38110..381771696845731.8441174-UTR-H-canaliculatus_F_contig15:38110..38177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 38111..38177 +
1622929240.9070437-UTR-H-canaliculatus_F_contig15:38813..398151622929240.9070437-UTR-H-canaliculatus_F_contig15:38813..39815Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 38814..39815 +
1696845731.8661075-UTR-H-canaliculatus_F_contig15:38813..398151696845731.8661075-UTR-H-canaliculatus_F_contig15:38813..39815Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 38814..39815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929240.8919532-CDS-H-canaliculatus_F_contig15:38177..388131622929240.8919532-CDS-H-canaliculatus_F_contig15:38177..38813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 38178..38813 +
1696845731.854319-CDS-H-canaliculatus_F_contig15:38177..388131696845731.854319-CDS-H-canaliculatus_F_contig15:38177..38813Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 38178..38813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15.3755.1

>prot_H-canaliculatus_F_contig15.3755.1 ID=prot_H-canaliculatus_F_contig15.3755.1|Name=mRNA_H-canaliculatus_F_contig15.3755.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=212bp
MQRLGSSVRMCRNINIRSSCGRCFSTSSGPEHDDYWAAAKTEAQATPAYQ
QAASAAASNPAPPPAPDVDQWATPGNYTPSTRRMPMGDAYGPSATSRVHE
GRSMPPSQYTNTSTQLNRQSEPAFDMESSMHLSPVKQVDVRSFMGQTLVD
IRQYFVSPGGATLPSKKGISLTVAQWRRLQAAMGEIDHDIQLKEQYSGMD
QNGREKPGGQA*
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mRNA from alignment at H-canaliculatus_F_contig15:38111..39815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15.3755.1 ID=mRNA_H-canaliculatus_F_contig15.3755.1|Name=mRNA_H-canaliculatus_F_contig15.3755.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1705bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:38111..39815+ (Hapterophycus canaliculatus Oshoro5f female)
ACCCAAGATTCCAACTCAGGGAGGGCACTGCTAGGCGGCGCGAGGCCAAG
GACAACGGTGCAGCAAGATGCAGAGGCTCGGGTCTTCGGTGAGAATGTGC
CGCAACATCAATATCCGCAGCTCTTGCGGCCGATGTTTTAGCACCTCGTC
TGGCCCAGAGCACGATGACTACTGGGCAGCTGCGAAGACGGAGGCACAGG
CAACCCCCGCATATCAACAGGCCGCGTCTGCTGCTGCAAGTAACCCCGCC
CCCCCTCCAGCACCTGACGTAGATCAGTGGGCGACACCCGGAAACTACAC
TCCAAGTACAAGAAGGATGCCAATGGGTGATGCATATGGGCCCTCCGCTA
CCAGCAGGGTCCATGAAGGCAGGAGCATGCCTCCATCTCAATACACTAAC
ACATCCACGCAGCTGAACCGTCAATCTGAACCCGCGTTCGACATGGAGAG
CTCGATGCACTTGTCTCCAGTGAAGCAGGTGGATGTCCGATCTTTCATGG
GTCAGACACTCGTGGATATCCGACAGTATTTCGTGAGCCCGGGAGGTGCG
ACCTTGCCTTCGAAGAAAGGCATTTCCCTCACGGTGGCGCAATGGAGACG
CCTTCAAGCAGCCATGGGCGAGATCGACCACGACATTCAATTGAAGGAGC
AATATTCCGGAATGGACCAAAATGGAAGAGAAAAGCCCGGTGGTCAGGCA
TGATAGTGGCATCCGAAGCAGGAAAGGACTGATGAAAAGCGCACAAGATG
CGGCGTCTTTTGGTTCCCTGGTGTAGATTGTGCGTATTTTGTCTAGGGCA
ACGTCGTCACTGGTGAGATGTGGTGAAATGTGGAGCATACGCCGTGGCTC
TATCTTGCCTGTTGTATTTCAGGAGTGATCGGTTTGTTCGAAATGTTGCT
ACTTGACGAGTCTGCAACAATACTAAAATGTGGTGCACGGAAATATAACC
CCTGACTGTCGCTTTTTCTCACTTGGTGCAAGTAGTTTTTTTGAATCGAG
TTTGACGCACACGTGATGCACGGCCCGTATTCTGTGGTCCAACGTAAAAT
ATACGAGGCCAGAATACCCATCTCGAAGTCCGGCTCACCATGTTTCTGCA
GCGTCGTCTTAGGCTCGCAGCGCATTCGAAGTATTATTTGCATTCGAATT
ACTTCTGCCGAGAGCAACAGTCTGGAGTGTGCGCAGTTCAACCAGCTTAG
TAGGATGTGGAAGTAGATGATCCGAGTTTTGTATCAGTGGCAGCAGGGCC
TCTCACGCAATGCGTAGACCGCTGCTTGTCTGGGGATGGTCTTGTTAAAA
ACCGGAATTGCCACGGGACGTGTGTTGTTGAATTGTGACCACTGAGTCAT
TCTTAAGATGAAAGGTCACTTGAAAAACAACTGACGTTCCGAAGATTTTG
CAGCGGAAGAAGCTAGAAGGAAACACGTTTGCAATCCGCCCTAACTTGCC
TTGCGTTACAACGCTGAGATGAAGGCCCGAATGCCTTCATGCTCTTCTTG
AGCTCAGCGTTGGCTTCGAGCGGAGTCACATCGCACGCGACGTCCAACGC
TCAGATTTGCTGTACATCGTGAAGCATCCCGTTCACCGCTCCCATGCCGT
CGCTCCAACGTTTGGAGGTATCTGGTTCAAGTGCTGAGTATTCAAGCCAA
CAAAATGTGCAAGGTAGACCGAACGTTGCGTCCGTCAAGTTCACCCCTGC
GGCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:38111..39815+

>mRNA_H-canaliculatus_F_contig15.3755.1 ID=mRNA_H-canaliculatus_F_contig15.3755.1|Name=mRNA_H-canaliculatus_F_contig15.3755.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1272bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:38111..39815+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGAGGCTCGGGTCTTCGGTGAGAATGTGCCGCAACATCAATATCCG
CAGCTCTTGCGGCCGATGTTTTAGCACCTCGTCTGGCCCAGAGCACGATG
ACTACTGGGCAGCTGCGAAGACGGAGGCACAGGCAACCCCCGCATATCAA
CAGGCCGCGTCTGCTGCTGCAAGTAACCCCGCCCCCCCTCCAGCACCTGA
CGTAGATCAGTGGGCGACACCCGGAAACTACACTCCAAGTACAAGAAGGA
TGCCAATGGGTGATGCATATGGGCCCTCCGCTACCAGCAGGGTCCATGAA
GGCAGGAGCATGCCTCCATCTCAATACACTAACACATCCACGCAGCTGAA
CCGTCAATCTGAACCCGCGTTCGACATGGAGAGCTCGATGCACTTGTCTC
CAGTGAAGCAGGTGGATGTCCGATCTTTCATGGGTCAGACACTCGTGGAT
ATCCGACAGTATTTCGTGAGCCCGGGAGGTGCGACCTTGCCTTCGAAGAA
AGGCATTTCCCTCACGGTGGCGCAATGGAGACGCCTTCAAGCAGCCATGG
GCGAGATCGACCACGACATTCAATTGAAGGAGCAATATTCCGGAATGGAC
CAAAATGGAAGAGAAAAGCCCGGTGGTCAGGCATGAATGCAGAGGCTCGG
GTCTTCGGTGAGAATGTGCCGCAACATCAATATCCGCAGCTCTTGCGGCC
GATGTTTTAGCACCTCGTCTGGCCCAGAGCACGATGACTACTGGGCAGCT
GCGAAGACGGAGGCACAGGCAACCCCCGCATATCAACAGGCCGCGTCTGC
TGCTGCAAGTAACCCCGCCCCCCCTCCAGCACCTGACGTAGATCAGTGGG
CGACACCCGGAAACTACACTCCAAGTACAAGAAGGATGCCAATGGGTGAT
GCATATGGGCCCTCCGCTACCAGCAGGGTCCATGAAGGCAGGAGCATGCC
TCCATCTCAATACACTAACACATCCACGCAGCTGAACCGTCAATCTGAAC
CCGCGTTCGACATGGAGAGCTCGATGCACTTGTCTCCAGTGAAGCAGGTG
GATGTCCGATCTTTCATGGGTCAGACACTCGTGGATATCCGACAGTATTT
CGTGAGCCCGGGAGGTGCGACCTTGCCTTCGAAGAAAGGCATTTCCCTCA
CGGTGGCGCAATGGAGACGCCTTCAAGCAGCCATGGGCGAGATCGACCAC
GACATTCAATTGAAGGAGCAATATTCCGGAATGGACCAAAATGGAAGAGA
AAAGCCCGGTGGTCAGGCATGA
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