mRNA_H-canaliculatus_F_contig15.3758.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15.3758.1
Unique NamemRNA_H-canaliculatus_F_contig15.3758.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15contigH-canaliculatus_F_contig15:53610..54115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.580295-CDS-H-canaliculatus_F_contig15:53609..539631622929239.580295-CDS-H-canaliculatus_F_contig15:53609..53963Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 53610..53963 +
1696845731.0466106-CDS-H-canaliculatus_F_contig15:53609..539631696845731.0466106-CDS-H-canaliculatus_F_contig15:53609..53963Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 53610..53963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.599529-UTR-H-canaliculatus_F_contig15:53963..541151622929239.599529-UTR-H-canaliculatus_F_contig15:53963..54115Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 53964..54115 +
1696845731.0587292-UTR-H-canaliculatus_F_contig15:53963..541151696845731.0587292-UTR-H-canaliculatus_F_contig15:53963..54115Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 53964..54115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15.3758.1prot_H-canaliculatus_F_contig15.3758.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15 53610..53963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15.3758.1

>prot_H-canaliculatus_F_contig15.3758.1 ID=prot_H-canaliculatus_F_contig15.3758.1|Name=mRNA_H-canaliculatus_F_contig15.3758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
ELQYYEQAFSPSYFATLAVPAVHKGCSGGCTAVHTLLNTHALLVRRGRWR
EIPGKYAAQIVGEWYLRPISDSFTRRPVLSTNPSSTAVVHGMLRCTPCVE
GCSFSKVCGVICYPLDF*
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mRNA from alignment at H-canaliculatus_F_contig15:53610..54115+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15.3758.1 ID=mRNA_H-canaliculatus_F_contig15.3758.1|Name=mRNA_H-canaliculatus_F_contig15.3758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:53610..54115+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCTGCAGTACTACGAGCAGGCTTTCTCCCCTTCGTACTTCGCTACTCT
TGCGGTTCCGGCGGTGCACAAAGGCTGTTCAGGCGGGTGTACCGCCGTGC
ATACACTGCTTAATACTCACGCATTGCTCGTCAGACGAGGGCGATGGAGG
GAGATACCTGGAAAGTATGCTGCTCAGATAGTGGGGGAGTGGTATCTAAG
ACCAATTTCTGATTCTTTTACTCGGAGACCTGTGCTTTCTACAAATCCAT
CAAGCACAGCTGTAGTGCATGGAATGTTGCGATGTACTCCCTGTGTGGAG
GGCTGCTCCTTCTCAAAAGTGTGTGGTGTTATTTGTTATCCGCTTGACTT
TTAGCGGTGCTTGAGAGCCCTCTGGTGTCGACCTTCCCCTCAAACCCTGC
ACATGTGCTGAAACACTGCTGTCATGTTCCCGACCATTTAGGCTGCATGG
CCGAACAGCTGTAGTTGGTCGTACCTTTGGCTCGTTCTCAGCCATATGCG
TCCGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:53610..54115+

>mRNA_H-canaliculatus_F_contig15.3758.1 ID=mRNA_H-canaliculatus_F_contig15.3758.1|Name=mRNA_H-canaliculatus_F_contig15.3758.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:53610..54115+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCTGCAGTACTACGAGCAGGCTTTCTCCCCTTCGTACTTCGCTACTCT
TGCGGTTCCGGCGGTGCACAAAGGCTGTTCAGGCGGGTGTACCGCCGTGC
ATACACTGCTTAATACTCACGCATTGCTCGTCAGACGAGGGCGATGGAGG
GAGATACCTGGAAAGTATGCTGCTCAGATAGTGGGGGAGTGGTATCTAAG
ACCAATTTCTGATTCTTTTACTCGGAGACCTGTGCTTTCTACAAATCCAT
CAAGCACAGCTGTAGTGCATGGAATGTTGCGATGTACTCCCTGTGTGGAG
GGCTGCTCCTTCTCAAAAGTGTGTGGTGTTATTTGTTATCCGCTTGACTT
TTAGGAGCTGCAGTACTACGAGCAGGCTTTCTCCCCTTCGTACTTCGCTA
CTCTTGCGGTTCCGGCGGTGCACAAAGGCTGTTCAGGCGGGTGTACCGCC
GTGCATACACTGCTTAATACTCACGCATTGCTCGTCAGACGAGGGCGATG
GAGGGAGATACCTGGAAAGTATGCTGCTCAGATAGTGGGGGAGTGGTATC
TAAGACCAATTTCTGATTCTTTTACTCGGAGACCTGTGCTTTCTACAAAT
CCATCAAGCACAGCTGTAGTGCATGGAATGTTGCGATGTACTCCCTGTGT
GGAGGGCTGCTCCTTCTCAAAAGTGTGTGGTGTTATTTGTTATCCGCTTG
ACTTTTAG
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