mRNA_H-canaliculatus_F_contig15.3750.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig15.3750.1
Unique NamemRNA_H-canaliculatus_F_contig15.3750.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig15.3750.1 vs. uniprot
Match: D7FYT2_ECTSI (DUF3752 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYT2_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.250e-5
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = -3 
Query:  234 THNESQEAGRILVSMLAAAPPLATELGELLDALGES*SRMIVGLFFSGRLSDAPCFLVVL 413
            T  E +EA ++LVSMLAAAPPLA ELGELLDAL E  +  + G+  +   S    FL  L
Sbjct:    5 TATEKEEAAQLLVSMLAAAPPLANELGELLDALDEGETVFVGGVKDATLRSQLAAFLTAL 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig15.3750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYT2_ECTSI1.250e-551.67DUF3752 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig15contigH-canaliculatus_F_contig15:15746..16343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig15.3750.1prot_H-canaliculatus_F_contig15.3750.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig15 15762..16187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.490466-UTR-H-canaliculatus_F_contig15:15745..157611622929239.490466-UTR-H-canaliculatus_F_contig15:15745..15761Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 15746..15761 +
1696845731.0096166-UTR-H-canaliculatus_F_contig15:15745..157611696845731.0096166-UTR-H-canaliculatus_F_contig15:15745..15761Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 15746..15761 +
1622929239.5262105-UTR-H-canaliculatus_F_contig15:16187..163431622929239.5262105-UTR-H-canaliculatus_F_contig15:16187..16343Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 16188..16343 +
1696845731.029469-UTR-H-canaliculatus_F_contig15:16187..163431696845731.029469-UTR-H-canaliculatus_F_contig15:16187..16343Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig15 16188..16343 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929239.5120642-CDS-H-canaliculatus_F_contig15:15761..161871622929239.5120642-CDS-H-canaliculatus_F_contig15:15761..16187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 15762..16187 +
1696845731.0182166-CDS-H-canaliculatus_F_contig15:15761..161871696845731.0182166-CDS-H-canaliculatus_F_contig15:15761..16187Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig15 15762..16187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig15.3750.1

>prot_H-canaliculatus_F_contig15.3750.1 ID=prot_H-canaliculatus_F_contig15.3750.1|Name=mRNA_H-canaliculatus_F_contig15.3750.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=142bp
MNSSCTLPNVELRTVPHKRPKLSSATLPCDQLSPSPTRTMQQSLPVEGRK
YSYCSYLCWIRSTQAAVETKVKSTQQGNKARRKDALKKTNRRSFSTTTHP
GRREAHPAQSLRVELPQASTRVFDRPPVIHYELIAKCRVEE*
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mRNA from alignment at H-canaliculatus_F_contig15:15746..16343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig15.3750.1 ID=mRNA_H-canaliculatus_F_contig15.3750.1|Name=mRNA_H-canaliculatus_F_contig15.3750.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=598bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:15746..16343+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGCTGCAAACGTCAATGAACTCGTCATGTACTCTTCCCAACGTGGAAC
TCCGTACTGTTCCGCACAAGCGTCCAAAGCTTTCCTCCGCAACACTGCCC
TGTGATCAACTCTCTCCAAGTCCGACTAGGACAATGCAACAGAGTCTTCC
TGTTGAAGGACGAAAGTACTCGTACTGTAGTTATCTGTGTTGGATTCGGT
CAACACAAGCAGCAGTTGAGACTAAAGTCAAGTCAACACAACAAGGAAAC
AAGGCGCGTCGGAAAGACGCCCTGAAAAAAACAAACCGACGATCATTCTC
GACTACGACTCACCCAGGGCGTCGAGAAGCTCACCCAGCTCAGTCGCTAA
GGGTGGAGCTGCCGCAAGCATCGACACGAGTATTCGACCGGCCTCCTGTG
ATTCATTATGAGTTGATAGCGAAATGCCGAGTCGAGGAATGAGTTCGGCT
GCCAGGCTGGAAGCTAGAGGATAGACCCATCCCTCATCCTTCTACTCAGC
ACAAGCAAACAGCAATACGGTGGCTAGCCACCCACCTTCTTACTTCCAGC
CGAAAGCTTCCTCATTGTGAACCAAAGAGCCGCAAAACGCAACACTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig15:15746..16343+

>mRNA_H-canaliculatus_F_contig15.3750.1 ID=mRNA_H-canaliculatus_F_contig15.3750.1|Name=mRNA_H-canaliculatus_F_contig15.3750.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=852bp|location=Sequence derived from alignment at H-canaliculatus_F_contig15:15746..16343+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACTCGTCATGTACTCTTCCCAACGTGGAACTCCGTACTGTTCCGCA
CAAGCGTCCAAAGCTTTCCTCCGCAACACTGCCCTGTGATCAACTCTCTC
CAAGTCCGACTAGGACAATGCAACAGAGTCTTCCTGTTGAAGGACGAAAG
TACTCGTACTGTAGTTATCTGTGTTGGATTCGGTCAACACAAGCAGCAGT
TGAGACTAAAGTCAAGTCAACACAACAAGGAAACAAGGCGCGTCGGAAAG
ACGCCCTGAAAAAAACAAACCGACGATCATTCTCGACTACGACTCACCCA
GGGCGTCGAGAAGCTCACCCAGCTCAGTCGCTAAGGGTGGAGCTGCCGCA
AGCATCGACACGAGTATTCGACCGGCCTCCTGTGATTCATTATGAGTTGA
TAGCGAAATGCCGAGTCGAGGAATGAATGAACTCGTCATGTACTCTTCCC
AACGTGGAACTCCGTACTGTTCCGCACAAGCGTCCAAAGCTTTCCTCCGC
AACACTGCCCTGTGATCAACTCTCTCCAAGTCCGACTAGGACAATGCAAC
AGAGTCTTCCTGTTGAAGGACGAAAGTACTCGTACTGTAGTTATCTGTGT
TGGATTCGGTCAACACAAGCAGCAGTTGAGACTAAAGTCAAGTCAACACA
ACAAGGAAACAAGGCGCGTCGGAAAGACGCCCTGAAAAAAACAAACCGAC
GATCATTCTCGACTACGACTCACCCAGGGCGTCGAGAAGCTCACCCAGCT
CAGTCGCTAAGGGTGGAGCTGCCGCAAGCATCGACACGAGTATTCGACCG
GCCTCCTGTGATTCATTATGAGTTGATAGCGAAATGCCGAGTCGAGGAAT
GA
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