mRNA_H-canaliculatus_F_contig1498.3737.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1498.3737.1
Unique NamemRNA_H-canaliculatus_F_contig1498.3737.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1498.3737.1 vs. uniprot
Match: D7FIK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK4_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 1.360e-131
Identity = 198/266 (74.44%), Postives = 218/266 (81.95%), Query Frame = 1 
Query:    1 MDSSWQLDPRVLIFPITKPPPTSWEDVSRVHGRLSRHWALIRGLIEEQKRARKNRCSSTARLSATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMIHKAGDKYLVSQVTARNPKHQPPTKAFAASAAAIVVALRREANRRAAAKSTAT---------ATKATAVWFTENEVRALAAPLCEEDLTHKGDEIVLGEVENFAWCSMAHLLSENKFDCVKKKDLDENATIAKLEELGRRPVCSSPGCNANATKSVGELSERVKVATFLR 771
            M S W LDPR+L FPITKPPPT WEDVS VHGR SRHW LIRGL+EEQK+ARKNR SS+ARL+ATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMI K G K+L +QVTARNPKHQP  K F ASAAAI+VA+ RE  RRA      +         A  A A WFTE E+R LAAPLCEEDLTH+GDEIVLGEVENFAWCSMA+L + NKFDCV +KDLDE ATIA+L+ELG RP+CSSPGCNA ATKS+G+LSERVK ATFLR
Sbjct:    1 MASDWALDPRMLAFPITKPPPTRWEDVSCVHGRCSRHWGLIRGLMEEQKKARKNRGSSSARLTATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMIQKMGAKHLAAQVTARNPKHQPSNKTFVASAAAILVAMSREVKRRATVVDVTSESNGGKGPPAAAAPAAWFTEKEIRRLAAPLCEEDLTHRGDEIVLGEVENFAWCSMAYLTNHNKFDCVARKDLDEKATIAQLQELGERPICSSPGCNAYATKSMGDLSERVKTATFLR 266
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1498.3737.1 vs. uniprot
Match: A0A6H5KF35_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF35_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 1.840e-90
Identity = 163/257 (63.42%), Postives = 179/257 (69.65%), Query Frame = 1 
Query:    1 MDSSWQLDPRVLIFPITKPPPTSWEDVSRVHGRLSRHWALIRGLIEEQKRARKNRCSSTARLSATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMIHKAGDKYLVSQVTARNPKHQPPTKAFAASAAAIVVALRREANRRAAAKSTATATKATAVWFTENEVRALAAPLCEEDLTHKGDEIVLGEVENFAWCSMAHLLSENKFDCVKKKDLDENATIAKLEELGRRPVCSSPGCNANATKSVGELSERVKVATFLR 771
            MDS W LDPR+L FPITKPPPT WEDVS VHGR SRHW LIRGLIEEQK+ARKNR SS+ARL+ATLFREVVARLSLSLEAVDTKDKFSCTPGVGEM+            TARNPKHQP  K F ASAAAI+VA+R                      F E                    +   GEVENFAWCSMA+L + NKFDCV KKDLDE AT+A+L+ELG RP+CSSPGCNA ATK +G+LSERVK ATFLR
Sbjct:    1 MDSDWALDPRMLAFPITKPPPTRWEDVSCVHGRCSRHWGLIRGLIEEQKKARKNRGSSSARLTATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMV------------TARNPKHQPSNKTFVASAAAILVAMR----------------------FPEFS-----------------PDTPTGEVENFAWCSMAYLTNHNKFDCVAKKDLDEKATVAQLQELGERPICSSPGCNAYATKRMGDLSERVKPATFLR 206
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1498.3737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK4_ECTSI1.360e-13174.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF35_9PHAE1.840e-9063.42ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1498contigH-canaliculatus_F_contig1498:461..3742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size774
Cds size774
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1498.3737.1prot_H-canaliculatus_F_contig1498.3737.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1498 461..3742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929238.2785382-CDS-H-canaliculatus_F_contig1498:460..5681622929238.2785382-CDS-H-canaliculatus_F_contig1498:460..568Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 461..568 -
1696845730.4427574-CDS-H-canaliculatus_F_contig1498:460..5681696845730.4427574-CDS-H-canaliculatus_F_contig1498:460..568Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 461..568 -
1622929238.2944734-CDS-H-canaliculatus_F_contig1498:1010..11231622929238.2944734-CDS-H-canaliculatus_F_contig1498:1010..1123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 1011..1123 -
1696845730.4538884-CDS-H-canaliculatus_F_contig1498:1010..11231696845730.4538884-CDS-H-canaliculatus_F_contig1498:1010..1123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 1011..1123 -
1622929238.3138113-CDS-H-canaliculatus_F_contig1498:1830..19791622929238.3138113-CDS-H-canaliculatus_F_contig1498:1830..1979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 1831..1979 -
1696845730.462776-CDS-H-canaliculatus_F_contig1498:1830..19791696845730.462776-CDS-H-canaliculatus_F_contig1498:1830..1979Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 1831..1979 -
1622929238.3497052-CDS-H-canaliculatus_F_contig1498:2423..25391622929238.3497052-CDS-H-canaliculatus_F_contig1498:2423..2539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 2424..2539 -
1696845730.4729733-CDS-H-canaliculatus_F_contig1498:2423..25391696845730.4729733-CDS-H-canaliculatus_F_contig1498:2423..2539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 2424..2539 -
1622929238.366824-CDS-H-canaliculatus_F_contig1498:2960..31131622929238.366824-CDS-H-canaliculatus_F_contig1498:2960..3113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 2961..3113 -
1696845730.4837508-CDS-H-canaliculatus_F_contig1498:2960..31131696845730.4837508-CDS-H-canaliculatus_F_contig1498:2960..3113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 2961..3113 -
1622929238.3844223-CDS-H-canaliculatus_F_contig1498:3607..37421622929238.3844223-CDS-H-canaliculatus_F_contig1498:3607..3742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 3608..3742 -
1696845730.4933147-CDS-H-canaliculatus_F_contig1498:3607..37421696845730.4933147-CDS-H-canaliculatus_F_contig1498:3607..3742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1498 3608..3742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1498.3737.1

>prot_H-canaliculatus_F_contig1498.3737.1 ID=prot_H-canaliculatus_F_contig1498.3737.1|Name=mRNA_H-canaliculatus_F_contig1498.3737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=258bp
MDSSWQLDPRVLIFPITKPPPTSWEDVSRVHGRLSRHWALIRGLIEEQKR
ARKNRCSSTARLSATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMIHKA
GDKYLVSQVTARNPKHQPPTKAFAASAAAIVVALRREANRRAAAKSTATA
TKATAVWFTENEVRALAAPLCEEDLTHKGDEIVLGEVENFAWCSMAHLLS
ENKFDCVKKKDLDENATIAKLEELGRRPVCSSPGCNANATKSVGELSERV
KVATFLR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1498:461..3742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1498.3737.1 ID=mRNA_H-canaliculatus_F_contig1498.3737.1|Name=mRNA_H-canaliculatus_F_contig1498.3737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3282bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1498:461..3742- (Hapterophycus canaliculatus Oshoro5f female)
ATGGATTCGTCTTGGCAGCTGGATCCCCGTGTGTTGATCTTCCCCATCAC
CAAGCCACCCCCAACATCCTGGGAAGATGTCTCTCGGGTGCACGGAAGGC
TCAGCAGGCACTGGGCGCTCATCCGAGGTCTAATCGTGAGTGAACATGAT
GATACGAAGGACTTTTGAATTCGTGGAAACCTCACGGCGTATTTGCGTCC
AAAATATCTGCAACGAAAACATAGCTTTGAAACCAATTCAGGATGGATGC
TCGCTCTCCAGGTCTTCCGCGGTCCTGTGTCAGAGCTATGGTGCGAGTTT
TGATTCGGGGCCGAGGCAACTGCTGTCTAGAGGATGTTATGGTTGTCTCA
CGTATCCTCTTTTCAAAGCTGTTGCCCGTTGGGATTAGCTGTCGACGCTG
GTGTACTCGGGGTCGGTGGGGAGAGGACGCTACAATAGTGCGCTGTGCTG
TATTGGCTATCCGCTTTTAGGCGGCCGAGATACAAGTATGAGAGGGGGGT
TTGTTCAGGCGGGCTCTCGAAGAAATGGTTGAAAAGTCCCAGGCAGGGTG
CGAAAGGTTGTAACGGTACAAGTATTTTTTCACCGCCCTGACCGGATGTT
GTTACTCCCCTCACCGACTCGAAACGCAGGAAGAGCAAAAGAGGGCGAGA
AAGAACAGATGCAGCAGCACCGCTCGCCTTTCGGCAACCCTGTTCCGAGA
GGTGGTGGCTCGCCTCAGCCTTTCTCTGGAGGCGGTGGACACCAAGGACA
AGTTCAGCTGCACCCCAGGGGTCGGCGAAATGGTACGTTTCATCCGCGCA
CCATGCAAGTATGGTACAAGTCATGTTTCGACTGCTGCTGCTGCTGCTGC
TGCTACTGCTGCTGCTGCTGCTGCTGCTGCTTGGTTTGGTGTCTTCTTGA
GGTCGGTTTCCATTCGCTCCCGGTTTGCTTATTCTAAGATTTTATGACAG
ACTTCATCCCTCTGCAGGCGGGACACGTTATGCCGGCTCCGGGAAAGGTG
TGGCGTGCTCGGCGTAGTTGACCAGAACAGCTACTTGTATGACAAGCCGA
TGCAGCGCACAAAACTCGGGGTATTCATGGTCGCACCAAACTGCTCAAAA
GCCTCGACATTCAAACCACCGAACGAAACAAGCGACAAGCAAATCGCCGC
AAGAACAGAATGAACCCTTCCTTCGGCCGTCCGATTGCTCGTTCCTTCGA
CAGATTCACAAGGCGGGCGACAAGTATCTCGTGTCTCAGGTCACAGCCCG
TAACCCGAAGCATCAACCACCCACCAAGGCGTTCGCGGCGTCAGCGGCAG
CTATCGTTGTCGCCTTGAGGTGTGTGGACGGTGACGTAGGTGCGGCTGGT
ATTGTCGTCGTCTTTGCCTTTTGTATTTTGTTCCGTGTTGGTACAGCTGT
TGTTGTGGTCATGGCGGTGGTAGCGCTATTAGCTTCTGCCATAGCTAAAT
TCGTCTTCGCACTTCGAGCCGACGCTCGTGTTTTTGTTTGCCGGGCTTCT
GCCTGTGCGCACCCTGCATCACGTAGCATCCAACATCTCCAGCGGGCCTA
GAAAGCTCATGGCTCTTGACCTGCCGGATCTCATTTTTGCCGCGCTGTTC
CATGCCTGATGATGAATGACGGCGAAGCTCGAACGACAAACGCATCCGCT
TGTGTTGGGCTTCATGTCCCTTCCTGTGGTGCTGTTGACTCCGCCGCTGC
ATGCGTAGATGCACAATGGTCCAAACTCGCATCGCGCCCATCTGACACGA
ACGGTTATGACAGACGCGAGGCGAATCGGAGAGCAGCGGCAAAATCAACA
GCAACGGCAACGAAAGCAACGGCTGTGTGGTTCACAGAAAACGAGGTTAG
GGCGCTAGCGGCACCCCTCTGCGAGGAAGACCTGACTCACAAAGGAGACG
AGATTGTCCTAGGTGAGTGATGCCAGTGGTCGCACTGACGCCAGCATTGC
CCTGACGGTAGCGCTGTAGACTGGGGGGCAAAATGAGCAGGAGGAACGGG
GGCACGAAGGTGGGGAGACGGGTGGGAGGGGGGAGGGCGTTGTCACTGGC
CTTCGTCGTTGGCAAGACGTTTTGGACGAGATGGAGCATCGACGTGCCCG
CCTTTCTCCGTCTGGGTAAACTTTCGTATCGTGAGAGTGCTCTTTGCCAA
ATCGCCGGGGGGGCACCTCGGAGTAAGGCGACGCTTGTGGCAGAGGACAG
GTGGGTGAGGCGACCGTGGCAAAGAGCGACGGGCAGAGATTTCGAAGGGC
GGGCTCAAAGGCGGAGAATACGGAACAGATTAGGCGCATAATTGTAATTG
CGCGTACTACGGCCAGGCGCCTGCACCGAAGGAACTACCGGCACGGCACT
ACAGCTAGTTTCACGGCGATGGCGGAAATGCGTGTGTTGTCGAAAAAATG
GCATCGGCTGGGAGTGGGTAGCACGCCGGGATCGAGAGTTTGCTCGCTTA
TCCCGTGGGTGACAAGCGGTTGTGGCGAGGGGCATGTTGCTCGTGTGTCG
CCCGTGGAACCTCAGCCGCTCGTTGGCTGTTCGAACACGTTGAGGTTGTC
CACGCAAGTACTCTGGGTGTTGACCCTTCTTGACGTACGCGCCTCTCTGC
CCTGTCTGATCGCGCACAGGGGAGGTTGAGAACTTCGCCTGGTGTTCGAT
GGCTCACCTCCTGAGCGAGAACAAGTTCGACTGTGTCAAGAAGAAGGACC
TCGATGAAAATGCCACCATCGCGAAGCTGGAGGTACGCAATTCCGAGGGC
GCGCGTGAAGCCTCCCCCAATTTGCCAGGCTGCGTGGTTGTGTCCTCGTG
TGGGTCTGAGTATTTGCTGTCTTTGATGGCCGGTTGTGGTCGTGGCGATG
CCGAAAGGGATGATGCCACCTTCAAATTATTGTCGTCCTCGTCGATGTGG
TCTGTGCTTGCGACGTGACGACTACTTTTCAGCGTTTACCTCACACGATC
AGATGTGCTTATTTTTGGGTTACATGTTGTTTACCCTAAAGGTTTGTCAG
CCCTCTCTTTTTCTGCCGATCCTCCTTATCACACGTTTTTCCGACGACTG
ATGGTAGCAGCAGGAGATGCACACGCCTGGGTAAAACGCTGTTACCAAGT
TCCCAAGACCCTCTTCTGACGTGTGCCTGAAAAACGCAGCTTGCCTTCCG
TTTTTCGCTCGGGCGTTTTCGCAGGAGTTGGGAAGGAGACCAGTGTGCAG
CAGCCCGGGCTGCAACGCAAATGCCACCAAAAGCGTGGGAGAACTGAGCG
AAAGAGTCAAGGTCGCCACGTTCCTCAGGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1498:461..3742-

>mRNA_H-canaliculatus_F_contig1498.3737.1 ID=mRNA_H-canaliculatus_F_contig1498.3737.1|Name=mRNA_H-canaliculatus_F_contig1498.3737.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1548bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1498:461..3742- (Hapterophycus canaliculatus Oshoro5f female)
ATGGATTCGTCTTGGCAGCTGGATCCCCGTGTGTTGATCTTCCCCATCAC
CAAGCCACCCCCAACATCCTGGGAAGATGTCTCTCGGGTGCACGGAAGGC
TCAGCAGGCACTGGGCGCTCATCCGAGGTCTAATCATGGATTCGTCTTGG
CAGCTGGATCCCCGTGTGTTGATCTTCCCCATCACCAAGCCACCCCCAAC
ATCCTGGGAAGATGTCTCTCGGGTGCACGGAAGGCTCAGCAGGCACTGGG
CGCTCATCCGAGGTCTAATCGAAGAGCAAAAGAGGGCGAGAAAGAACAGA
TGCAGCAGCACCGCTCGCCTTTCGGCAACCCTGTTCCGAGAGGTGGTGGC
TCGCCTCAGCCTTTCTCTGGAGGCGGTGGACACCAAGGACAAGTTCAGCT
GCACCCCAGGGGTCGGCGAAATGGAAGAGCAAAAGAGGGCGAGAAAGAAC
AGATGCAGCAGCACCGCTCGCCTTTCGGCAACCCTGTTCCGAGAGGTGGT
GGCTCGCCTCAGCCTTTCTCTGGAGGCGGTGGACACCAAGGACAAGTTCA
GCTGCACCCCAGGGGTCGGCGAAATGATTCACAAGGCGGGCGACAAGTAT
CTCGTGTCTCAGGTCACAGCCCGTAACCCGAAGCATCAACCACCCACCAA
GGCGTTCGCGGCGTCAGCGGCAGCTATCGTTGTCGCCTTGAGATTCACAA
GGCGGGCGACAAGTATCTCGTGTCTCAGGTCACAGCCCGTAACCCGAAGC
ATCAACCACCCACCAAGGCGTTCGCGGCGTCAGCGGCAGCTATCGTTGTC
GCCTTGAGACGCGAGGCGAATCGGAGAGCAGCGGCAAAATCAACAGCAAC
GGCAACGAAAGCAACGGCTGTGTGGTTCACAGAAAACGAGGTTAGGGCGC
TAGCGGCACCCCTCTGCGAGGAAGACCTGACTCACAAAGGAGACGAGATT
GTCCTAGACGCGAGGCGAATCGGAGAGCAGCGGCAAAATCAACAGCAACG
GCAACGAAAGCAACGGCTGTGTGGTTCACAGAAAACGAGGTTAGGGCGCT
AGCGGCACCCCTCTGCGAGGAAGACCTGACTCACAAAGGAGACGAGATTG
TCCTAGGGGAGGTTGAGAACTTCGCCTGGTGTTCGATGGCTCACCTCCTG
AGCGAGAACAAGTTCGACTGTGTCAAGAAGAAGGACCTCGATGAAAATGC
CACCATCGCGAAGCTGGAGGGGAGGTTGAGAACTTCGCCTGGTGTTCGAT
GGCTCACCTCCTGAGCGAGAACAAGTTCGACTGTGTCAAGAAGAAGGACC
TCGATGAAAATGCCACCATCGCGAAGCTGGAGGAGTTGGGAAGGAGACCA
GTGTGCAGCAGCCCGGGCTGCAACGCAAATGCCACCAAAAGCGTGGGAGA
ACTGAGCGAAAGAGTCAAGGTCGCCACGTTCCTCAGGTAGGAGTTGGGAA
GGAGACCAGTGTGCAGCAGCCCGGGCTGCAACGCAAATGCCACCAAAAGC
GTGGGAGAACTGAGCGAAAGAGTCAAGGTCGCCACGTTCCTCAGGTAG
back to top