mRNA_H-canaliculatus_F_contig1489.3688.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1489.3688.1
Unique NamemRNA_H-canaliculatus_F_contig1489.3688.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1489.3688.1 vs. uniprot
Match: D8LTT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT2_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.780e-26
Identity = 81/124 (65.32%), Postives = 89/124 (71.77%), Query Frame = 1 
Query:  445 LTDQRGGGHAGGDFLRRRPFPGSSWAASGGGWGVNGGLDRGGLATLEGRETGGDTFRSASWADKLVVKREEQSVLVKQLERELASTVSALKDERKDRRNQTEALKRKLGEVRGAVGDREAELER 816
            L ++ GG  AGG FL      GSSWA  GG    +GG   GGLA       GGD FRSASWA+KLV KREEQSVLVKQLERELASTVSALKDER++RR QTE L+RKL E R  VGDREAEL+R
Sbjct:  471 LVEREGG--AGGRFL------GSSWAGVGG---SSGGYQLGGLAAAG---KGGDAFRSASWAEKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRATVGDREAELQR 580
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BLAST of mRNA_H-canaliculatus_F_contig1489.3688.1 vs. uniprot
Match: A0A6H5KDC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC5_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.710e-21
Identity = 69/103 (66.99%), Postives = 74/103 (71.84%), Query Frame = 1 
Query:  508 GSSWAASGGGWGVNGGLDRGGLATLEGRETGGDTFRSASWADKLVVKREEQSVLVKQLERELASTVSALKDERKDRRNQTEALKRKLGEVRGAVGDREAELER 816
            GSSWA  GG    +G    GG A       GG  F SASWA KLV KREEQSVLVKQLERELASTVSALKDER++RR QTE L+RKL E R AVG REAEL+R
Sbjct:  475 GSSWAGVGG---SSGSYHLGGRAAAG---EGGGAFSSASWAAKLVTKREEQSVLVKQLERELASTVSALKDERRERRGQTETLRRKLEETRAAVGYREAELQR 571
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1489.3688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT2_ECTSI3.780e-2665.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDC5_9PHAE8.710e-2166.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1489contigH-canaliculatus_F_contig1489:22657..25103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002910.1
Hectar predicted targeting categoryother localisation
Exons2
Model size1931
Cds size1263
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1489.3688.1prot_H-canaliculatus_F_contig1489.3688.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1489 22657..24436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.0176818-CDS-H-canaliculatus_F_contig1489:22656..233161622929230.0176818-CDS-H-canaliculatus_F_contig1489:22656..23316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 22657..23316 +
1696845726.8409154-CDS-H-canaliculatus_F_contig1489:22656..233161696845726.8409154-CDS-H-canaliculatus_F_contig1489:22656..23316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 22657..23316 +
1622929230.031698-CDS-H-canaliculatus_F_contig1489:23833..244361622929230.031698-CDS-H-canaliculatus_F_contig1489:23833..24436Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 23834..24436 +
1696845726.850717-CDS-H-canaliculatus_F_contig1489:23833..244361696845726.850717-CDS-H-canaliculatus_F_contig1489:23833..24436Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1489 23834..24436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929230.0518792-UTR-H-canaliculatus_F_contig1489:24436..251031622929230.0518792-UTR-H-canaliculatus_F_contig1489:24436..25103Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 24437..25103 +
1696845726.8597388-UTR-H-canaliculatus_F_contig1489:24436..251031696845726.8597388-UTR-H-canaliculatus_F_contig1489:24436..25103Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1489 24437..25103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1489.3688.1

>prot_H-canaliculatus_F_contig1489.3688.1 ID=prot_H-canaliculatus_F_contig1489.3688.1|Name=mRNA_H-canaliculatus_F_contig1489.3688.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=421bp
GLARGWDGAQRRKSSRSSATADTSASTAVSTACGGDEARPVGVGGGRVAL
DQGFAEFSSAGRNGDISTKRFYGVEGDAPPPLQAAPTAAKPPPPPLSTAA
HHGRTPSTYFHARSTEAVTVTDDGCGGRDAAVDATSYRHDAGRDETRRLT
DQRGGGHAGGDFLRRRPFPGSSWAASGGGWGVNGGLDRGGLATLEGRETG
GDTFRSASWADKLVVKREEQSVLVKQLERELASTVSALKDERKDRRNQTE
ALKRKLGEVRGAVGDREAELERYVCVCARLSSGSSCTAARAPVAAAATAE
HWEMDLRCSEVRIFHKTSQQHRRNTHLRHCPSQGAFINSYRMKLGSDRQV
VDKNVKSCGQRREKRWTFSLLAARYDAGSSSRAFSERSVSFLLSSLADAC
ANSWHPSACVGRQCLSLTRS*
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mRNA from alignment at H-canaliculatus_F_contig1489:22657..25103+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1489.3688.1 ID=mRNA_H-canaliculatus_F_contig1489.3688.1|Name=mRNA_H-canaliculatus_F_contig1489.3688.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2447bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:22657..25103+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCTCGCTCGGGGCTGGGACGGCGCGCAGCGGCGCAAGTCGTCCCGCTC
GTCGGCGACCGCTGACACGTCTGCGTCGACGGCGGTGTCGACGGCCTGTG
GAGGCGACGAGGCGCGACCCGTTGGCGTTGGCGGTGGTCGAGTGGCCTTG
GACCAGGGCTTCGCCGAGTTCAGCAGCGCCGGTAGAAACGGCGACATCAG
CACGAAGCGCTTCTACGGCGTTGAGGGTGATGCGCCGCCGCCACTGCAAG
CGGCACCCACGGCCGCCAAACCGCCACCGCCGCCGCTCTCTACGGCCGCT
CACCACGGCCGTACACCGTCAACATATTTTCACGCGAGGAGCACGGAGGC
TGTCACTGTCACCGACGATGGCTGCGGCGGCCGTGACGCTGCCGTCGACG
CCACCTCGTACCGCCACGATGCAGGGCGTGACGAGACCAGGCGACTCACC
GACCAGCGCGGGGGTGGACATGCGGGGGGAGATTTTCTCAGGAGGAGGCC
GTTCCCCGGGAGCTCCTGGGCTGCTTCCGGGGGAGGCTGGGGGGTGAACG
GTGGCTTGGACCGAGGCGGCTTGGCGACGTTAGAAGGGAGGGAAACCGGC
GGGGATACCTTTAGAAGCGCTTCTTGGGCGGACAAGCTTGTCGTCAAGCG
CGAGGAGCAGGTGGGGTTTCTCGCACACTTATTTACCGTAAATTCGCTAA
TTCGCCCACACGCGGAGGTCGAGTGACCCGGATTTATCGCCAACACGTGC
GCAGGCCGCTGCTGGCGCGGCTTCAGCGGCGCGCATCGTGCTACGGTGCT
TTGTGTCATGGGATCTCCCCTCGCTTGGTGCGAGCAAGAAGTGAACCCGA
GTTCCGTGGCGGGGTCGAAAAGCGTGTGTGTGCGGTGTGTTTTGTGTTTT
GTCCCTACCGACAAAGGAGGCGAACGCATACTTGTAGACGGTGGCATTTT
ACACGCGGTTCTCCTCCGAGCCAATCCCACGATCCGCGTTGCTTCAAAGG
TGGGAAAATGCCCAATCGTGTCGCTCTTGTGGGATGAATCGATTGGCAAC
GCGTCCGCGTCTTCTCACACGTGTCGACGTGCGCACTTGGACGTAGAAAG
CTTTGCCTTGTTTTCACTTCTCAAGCCTCAAGCCGACTTGGGAGTTTCGC
GTCCTCTCTGTCTTGCTGCCATCCCAGAGCGTCTTGGTAAAGCAACTGGA
ACGCGAGCTGGCGTCGACGGTGTCGGCTCTGAAAGACGAGAGGAAGGACA
GGAGGAACCAGACAGAGGCGCTCAAGCGCAAGCTTGGGGAAGTCAGGGGC
GCCGTGGGGGATAGAGAGGCGGAGCTCGAGAGGTATGTGTGTGTATGTGC
GCGTCTCTCGTCGGGATCTTCTTGCACAGCGGCACGAGCACCAGTAGCAG
CAGCTGCAACAGCAGAGCATTGGGAGATGGATCTCCGGTGCTCTGAGGTA
CGGATTTTTCATAAAACAAGTCAGCAACACCGAAGGAATACCCACCTGAG
ACACTGTCCATCTCAAGGGGCTTTTATTAATTCATACAGGATGAAACTAG
GTAGCGATAGGCAAGTTGTGGACAAAAACGTTAAAAGTTGTGGACAAAGA
CGTGAAAAACGATGGACTTTTTCGTTGTTGGCGGCAAGGTACGACGCCGG
AAGCAGCAGCCGGGCGTTCTCGGAGCGAAGTGTGTCTTTCTTGCTTTCTT
CTCTCGCGGACGCTTGCGCGAACTCTTGGCACCCGAGCGCGTGTGTAGGC
CGTCAATGTTTGAGCTTGACGAGATCATAAAAACATTCCTCGAAGCATGG
ACCGGCTAAGCTCGCGGGGGCACCCGGGTTGCGGTATTGCTCGTCGAGCG
AGGTCTTTTTTCTGAGTGGTTGCGGTCTCGCACCGGAGTTTTGATGGAGA
AAATAGGGATCAATCGCGCTCTTTAACATTGTCCACGCAGCCGTTGCTGG
AACGAGTTCATTGCTGGAGGAGGTTAGTGCGAACATCCGGGGCGGAGATG
CCGCAAGTGCGAAAATTGGCAGGCATCGCTTCAGCCTCTGGAGCGCTTCC
AAGGCGGTTGAACGAACAGGCCATCCCCCAGAACGTAATATTCGATTGGG
TTGGCGTAAGCTGCCAGGCCGAGAACGCGTCCAACGGGCACCGGCGCTTC
CGTTCGACGGCCGTAATCGGTGTTGGAAGCGTGCTGCCGCGCCAATTCAG
GTGTAACTCGTTCCATTCCGCGGCGCCCCTTTCTGTTCCTCCGGCACGAT
GCGCGCGAGCGCGAGCCGCCCCCCCCCGCGTGTGCTCGACCTTCTCCGCT
CGCAGAACATCGCTTTTCTTCTGCCTTCTGCACCCTGCCGCCTCCTCTCC
GCCAATGATATGCCGTCGGATGGGGATGTTGCTTCCCCAGCGAGGAAGGC
GCGGTTTGCTCCGCCCCTGCTGATGGTTGAAAAGCACCCAGCCCCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1489:22657..25103+

>mRNA_H-canaliculatus_F_contig1489.3688.1 ID=mRNA_H-canaliculatus_F_contig1489.3688.1|Name=mRNA_H-canaliculatus_F_contig1489.3688.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2526bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1489:22657..25103+ (Hapterophycus canaliculatus Oshoro5f female)
GGGCTCGCTCGGGGCTGGGACGGCGCGCAGCGGCGCAAGTCGTCCCGCTC
GTCGGCGACCGCTGACACGTCTGCGTCGACGGCGGTGTCGACGGCCTGTG
GAGGCGACGAGGCGCGACCCGTTGGCGTTGGCGGTGGTCGAGTGGCCTTG
GACCAGGGCTTCGCCGAGTTCAGCAGCGCCGGTAGAAACGGCGACATCAG
CACGAAGCGCTTCTACGGCGTTGAGGGTGATGCGCCGCCGCCACTGCAAG
CGGCACCCACGGCCGCCAAACCGCCACCGCCGCCGCTCTCTACGGCCGCT
CACCACGGCCGTACACCGTCAACATATTTTCACGCGAGGAGCACGGAGGC
TGTCACTGTCACCGACGATGGCTGCGGCGGCCGTGACGCTGCCGTCGACG
CCACCTCGTACCGCCACGATGCAGGGCGTGACGAGACCAGGCGACTCACC
GACCAGCGCGGGGGTGGACATGCGGGGGGAGATTTTCTCAGGAGGAGGCC
GTTCCCCGGGAGCTCCTGGGCTGCTTCCGGGGGAGGCTGGGGGGTGAACG
GTGGCTTGGACCGAGGCGGCTTGGCGACGTTAGAAGGGAGGGAAACCGGC
GGGGATACCTTTAGAAGCGCTTCTTGGGCGGACAAGCTTGTCGTCAAGCG
CGAGGAGCAGGGGCTCGCTCGGGGCTGGGACGGCGCGCAGCGGCGCAAGT
CGTCCCGCTCGTCGGCGACCGCTGACACGTCTGCGTCGACGGCGGTGTCG
ACGGCCTGTGGAGGCGACGAGGCGCGACCCGTTGGCGTTGGCGGTGGTCG
AGTGGCCTTGGACCAGGGCTTCGCCGAGTTCAGCAGCGCCGGTAGAAACG
GCGACATCAGCACGAAGCGCTTCTACGGCGTTGAGGGTGATGCGCCGCCG
CCACTGCAAGCGGCACCCACGGCCGCCAAACCGCCACCGCCGCCGCTCTC
TACGGCCGCTCACCACGGCCGTACACCGTCAACATATTTTCACGCGAGGA
GCACGGAGGCTGTCACTGTCACCGACGATGGCTGCGGCGGCCGTGACGCT
GCCGTCGACGCCACCTCGTACCGCCACGATGCAGGGCGTGACGAGACCAG
GCGACTCACCGACCAGCGCGGGGGTGGACATGCGGGGGGAGATTTTCTCA
GGAGGAGGCCGTTCCCCGGGAGCTCCTGGGCTGCTTCCGGGGGAGGCTGG
GGGGTGAACGGTGGCTTGGACCGAGGCGGCTTGGCGACGTTAGAAGGGAG
GGAAACCGGCGGGGATACCTTTAGAAGCGCTTCTTGGGCGGACAAGCTTG
TCGTCAAGCGCGAGGAGCAGAGCGTCTTGGTAAAGCAACTGGAACGCGAG
CTGGCGTCGACGGTGTCGGCTCTGAAAGACGAGAGGAAGGACAGGAGGAA
CCAGACAGAGGCGCTCAAGCGCAAGCTTGGGGAAGTCAGGGGCGCCGTGG
GGGATAGAGAGGCGGAGCTCGAGAGGTATGTGTGTGTATGTGCGCGTCTC
TCGTCGGGATCTTCTTGCACAGCGGCACGAGCACCAGTAGCAGCAGCTGC
AACAGCAGAGCATTGGGAGATGGATCTCCGGTGCTCTGAGGTACGGATTT
TTCATAAAACAAGTCAGCAACACCGAAGGAATACCCACCTGAGACACTGT
CCATCTCAAGGGGCTTTTATTAATTCATACAGGATGAAACTAGGTAGCGA
TAGGCAAGTTGTGGACAAAAACGTTAAAAGTTGTGGACAAAGACGTGAAA
AACGATGGACTTTTTCGTTGTTGGCGGCAAGGTACGACGCCGGAAGCAGC
AGCCGGGCGTTCTCGGAGCGAAGTGTGTCTTTCTTGCTTTCTTCTCTCGC
GGACGCTTGCGCGAACTCTTGGCACCCGAGCGCGTGTGTAGGCCGTCAAT
GTTTGAGCTTGACGAGATCATAAAGCGTCTTGGTAAAGCAACTGGAACGC
GAGCTGGCGTCGACGGTGTCGGCTCTGAAAGACGAGAGGAAGGACAGGAG
GAACCAGACAGAGGCGCTCAAGCGCAAGCTTGGGGAAGTCAGGGGCGCCG
TGGGGGATAGAGAGGCGGAGCTCGAGAGGTATGTGTGTGTATGTGCGCGT
CTCTCGTCGGGATCTTCTTGCACAGCGGCACGAGCACCAGTAGCAGCAGC
TGCAACAGCAGAGCATTGGGAGATGGATCTCCGGTGCTCTGAGGTACGGA
TTTTTCATAAAACAAGTCAGCAACACCGAAGGAATACCCACCTGAGACAC
TGTCCATCTCAAGGGGCTTTTATTAATTCATACAGGATGAAACTAGGTAG
CGATAGGCAAGTTGTGGACAAAAACGTTAAAAGTTGTGGACAAAGACGTG
AAAAACGATGGACTTTTTCGTTGTTGGCGGCAAGGTACGACGCCGGAAGC
AGCAGCCGGGCGTTCTCGGAGCGAAGTGTGTCTTTCTTGCTTTCTTCTCT
CGCGGACGCTTGCGCGAACTCTTGGCACCCGAGCGCGTGTGTAGGCCGTC
AATGTTTGAGCTTGACGAGATCATAA
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