prot_H-canaliculatus_F_contig148.3639.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-canaliculatus_F_contig148.3639.1
Unique Name	prot_H-canaliculatus_F_contig148.3639.1
Type	polypeptide
Organism	Hapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length	510

Homology

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BLAST of mRNA_H-canaliculatus_F_contig148.3639.1 vs. uniprot
Match: A0A6H5KL52_9PHAE (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL52_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 3.140e-129
Identity = 257/453 (56.73%), Postives = 293/453 (64.68%), Query Frame = 0

Query:    4 AGAAGGGETGGRGAGRSHAEAEMVAEAGGSGGRPVKLCVTNVYNSSSSDVVSLETTDTIADLKRVLQETVSGRPMPHQQRLIFRGKQC-DESEQLGQVLRGLDISGQHKIHLIVAPTAEKKSASEXXXXXXXSATIERAGAAQSLPSSHQDPPNPRPPLPAAPPAGCSQPAAP-----------AAGTNGRPERIHLSQMQLGQLQWQYQQALSESEKALEEHRQRFNFLSAQSRALTQQQHYLQRRASLATYHLYPTPAQPSQQQQRPQIPQQQXXXXXXXXXXXXXXXXLGGNMPGPAGGGAVRDVTGPPPEGHIPAAGLGDDGDAGRGNLVDPPPNAPDIAREARGWFKMVLQCMGVILVFGIDADLFVLALLALGGVVAILCRTGVLKEMLGSRREGGGLWQKLCTGATVITEGDGRLMDARYLTSAFFFSLFPQWKPVRSPEAIAAEA 444
            A AA  GE+  R AGRSH EAEM+A A GS G PVKL VT+VY+ SS  V SLETT TI DLKR+LQE    RP P QQRLIFRGKQC +E++QLG ++RGLD+SGQH +HLIV+   E++  +        +A + R   AQ      Q P         +  +  + PAAP              +N RPE + LSQ QL QLQ                HRQRFNFLSAQSRALTQQ+ Y + R   ATY         S            XXXX            LGGNMPGPAGGG VRDVTG PPEGHIPAAGLG +G+  RGNLVDP PNAPDI REAR W KMV QCMGVILVFGIDAD +VLALLALGG+ A L RTG+LKE+LGS REGGGLW+KLCTGATVITEG G L+DARY  SAFFFSLFP+W+PVRSPEAIA +A
Sbjct:    2 AAAATAGESDARAAGRSHPEAEMIAAARGSDGTPVKLFVTDVYHRSSK-VFSLETTITIGDLKRLLQEAFVSRPAPQQQRLIFRGKQCKEETQQLGHIMRGLDLSGQHNMHLIVSQPVEQELPA-----GGSTADVARTPTAQQSSLPQQRPXXXXXXXXXSLRSSSASPAAPHDTAXXXXXXXXXXSNERPECVQLSQTQLEQLQRXXXXXXXXXXXXXXXHRQRFNFLSAQSRALTQQRQY-RHRTPTATY---------SSPXXXXXXXXXXXXXXYTEVSARAATRALGGNMPGPAGGGGVRDVTGAPPEGHIPAAGLGQEGEVWRGNLVDPAPNAPDIGREARSWLKMVFQCMGVILVFGIDADGWVLALLALGGLFAFLFRTGLLKEILGSGREGGGLWKKLCTGATVITEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAIAVQA 438

[Close]

BLAST of mRNA_H-canaliculatus_F_contig148.3639.1 vs. uniprot
Match: D7G6U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6U9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.160e-40
Identity = 78/97 (80.41%), Postives = 86/97 (88.66%), Query Frame = 0

Query:  344 MVLQCMGVILVFGIDADLFVLALLALGGVVAILCRTGVLKEMLGSRREGGGLWQKLCTGATVITEGDGRLMDARYLTSAFFFSLFPQWKPVRSPEAI 440
            MV QCMGVILVFGIDA+ +VLALLALGG+ A L RTG+LKEMLGS REGGGLW+KLCTGATVI EG G L+DARY  SAFFFSLFP+W+PVRSPEAI
Sbjct:    1 MVFQCMGVILVFGIDANGWVLALLALGGLFAFLFRTGLLKEMLGSGREGGGLWKKLCTGATVIMEGGGILLDARYFFSAFFFSLFPKWQPVRSPEAI 97

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_F_contig148.3639.1 vs. uniprot

BLAST of mRNA_H-canaliculatus_F_contig148.3639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL52_9PHAE	3.140e-129	56.73	Ubiquitin-like domain-containing protein n=1 Tax=E...	[more]
D7G6U9_ECTSI	3.160e-40	80.41	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 204..231
None	No IPR available	COILS	Coil	Coil	coord: 459..486
None	No IPR available	GENE3D	3.10.20.90		coord: 32..125 e-value: 6.8E-14 score: 53.4
None	No IPR available	PANTHER	PTHR12943:SF27	HOMOCYSTEINE-INDUCED ENDOPLASMIC RETICULUM PROTEIN, ISOFORM A	coord: 37..499
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 340..357
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 358..362
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 382..509
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..339
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 363..381
None	No IPR available	TMHMM	TMhelix		coord: 354..376
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 48..117 e-value: 1.5E-6 score: 27.9
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 38..116 score: 10.745
IPR039751	Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 /2	PANTHER	PTHR12943	FAMILY NOT NAMED	coord: 37..499
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 32..118

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_F_contig148	contig	H-canaliculatus_F_contig148:4679..7629 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90	2022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_F_contig148.3639.1	mRNA_H-canaliculatus_F_contig148.3639.1	Hapterophycus canaliculatus Oshoro5f female	mRNA	H-canaliculatus_F_contig148 3830..9651 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-canaliculatus_F_contig148.3639.1 ID=prot_H-canaliculatus_F_contig148.3639.1|Name=mRNA_H-canaliculatus_F_contig148.3639.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=510bp
METAGAAGGGETGGRGAGRSHAEAEMVAEAGGSGGRPVKLCVTNVYNSSS
SDVVSLETTDTIADLKRVLQETVSGRPMPHQQRLIFRGKQCDESEQLGQV
LRGLDISGQHKIHLIVAPTAEKKSASESESESESSATIERAGAAQSLPSS
HQDPPNPRPPLPAAPPAGCSQPAAPAAGTNGRPERIHLSQMQLGQLQWQY
QQALSESEKALEEHRQRFNFLSAQSRALTQQQHYLQRRASLATYHLYPTP
AQPSQQQQRPQIPQQQPLQDPLRVATRAATRALGGNMPGPAGGGAVRDVT
GPPPEGHIPAAGLGDDGDAGRGNLVDPPPNAPDIAREARGWFKMVLQCMG
VILVFGIDADLFVLALLALGGVVAILCRTGVLKEMLGSRREGGGLWQKLC
TGATVITEGDGRLMDARYLTSAFFFSLFPQWKPVRSPEAIAAEAAAAEAQ
AAAERRARRVQAEQRLAQAAQLVDQAEQALQDATTTQAAGGANDTPAEQG
ADVIPPTVD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-like_domsf
IPR039751	HERPUD1/2
IPR000626	Ubiquitin_dom