mRNA_H-canaliculatus_F_contig14772.3626.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14772.3626.1
Unique NamemRNA_H-canaliculatus_F_contig14772.3626.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A7R9Y9N6_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9N6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.980e-17
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    7 QWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTG 159
            QWV D EL  SKYAE+LE +D+G KISSDP TW CEDSG TENLWLNLSTG
Sbjct:  170 QWVDDEELKESKYAEALEQLDNGVKISSDPSTWKCEDSGMTENLWLNLSTG 220
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A7S2V2B3_9STRA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.070e-16
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 VNQWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTGEEAEGESVAKASEGTPA 210
            V+QW  D ++ VSKYAE+L  +D+G+KIS DP TW CE+SG  ENLWLNLSTG    G  +   + GT A
Sbjct:   60 VDQWTMDEDVPVSKYAENLVQLDNGKKISPDPATWACEESGMKENLWLNLSTGHIGSGRPMWDGTGGTGA 129
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A7R9TGP0_9VIRI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TGP0_9VIRI)

HSP 1 Score: 81.3 bits (199), Expect = 3.280e-16
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 VNQWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTGEEAEGESVAKASEGTPA 210
            V+ +VAD E  VSKYAESLE +D+G KIS DP TW CE+SG TENLWLNLSTG    G      S GT A
Sbjct:  174 VDAFVADEERKVSKYAESLEQLDNGVKISPDPTTWKCEESGMTENLWLNLSTGHIGSGRRNWDGSGGTGA 243
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A836CMU5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMU5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.290e-13
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VNQWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTG 159
            V  W A+ EL VSKYAE+L   D+G +IS+DP +W C DSG TENLWLNLSTG
Sbjct:  184 VASWEAEQELPVSKYAENLPVEDNGVRISNDPSSWKCADSGVTENLWLNLSTG 236
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A2R5GGB5_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGB5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 4.280e-13
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   10 WVADNEL-VVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTGEEAEGESVAKASEGTPA 210
            W A  E   VSK+AE+LE +D+G +IS DPKTW CEDSG TENLWLNLSTG    G      S GT A
Sbjct:  177 WDASEEKRPVSKFAENLEQLDNGVRISPDPKTWRCEDSGLTENLWLNLSTGYIGSGRRNWDGSGGTGA 244
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A7S3F788_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3F788_9VIRI)

HSP 1 Score: 71.6 bits (174), Expect = 6.490e-13
Identity = 38/70 (54.29%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 VNQWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTGEEAEGESVAKASEGTPA 210
            V+ +VAD    VSKYA+ LE +D+G KIS DP TW C +SG  ENLWLNLSTG    G      S GT A
Sbjct:  182 VDAFVADEVRKVSKYADGLEQLDNGIKISPDPSTWECAESGMKENLWLNLSTGHIGSGRRNWDGSGGTGA 251
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A448ZMX3_9STRA (UBP-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMX3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.670e-12
Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   10 WVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTG 159
            W  D E+ +SKY   L  VD+G KIS DPK+W CE SG TEN+WLNLS G
Sbjct:  129 WKDDEEIPISKYCNELPFVDNGVKISPDPKSWKCEKSGDTENIWLNLSDG 178
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: B7FRR1_PHATC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRR1_PHATC)

HSP 1 Score: 68.9 bits (167), Expect = 7.080e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 VNQWVAD-NELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTG 159
            V  W  D +++ VSKYAE+L  VD+G +IS DPK+W CE SG TENLWLNLS G
Sbjct:  163 VKTWQLDQDDIQVSKYAENLPFVDNGVEISPDPKSWKCESSGATENLWLNLSDG 216
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A383VCQ9_TETOB (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VCQ9_TETOB)

HSP 1 Score: 68.6 bits (166), Expect = 9.720e-12
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 VNQWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTGEEAEGESVAKASEG 201
            V+ W  + E  VS+YAE L  +DSGRKIS +P  W C+++G TENLWLNLSTG    G   A  S G
Sbjct:  173 VSAW--EEERRVSRYAEGLPQLDSGRKISPNPADWRCDETGVTENLWLNLSTGHIGSGRQFADGSGG 237
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Match: A0A7S0NC19_9CRYP (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0NC19_9CRYP)

HSP 1 Score: 68.2 bits (165), Expect = 1.320e-11
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   34 VSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNLSTG 159
            VSKYA++L  V++G+KIS DPKTW CE+SG TENLWLNLS G
Sbjct:   94 VSKYAQNLVQVNNGKKISPDPKTWKCEESGMTENLWLNLSDG 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14772.3626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9Y9N6_9STRA1.980e-1776.47Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ping... [more]
A0A7S2V2B3_9STRA1.070e-1654.29Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Fibroca... [more]
A0A7R9TGP0_9VIRI3.280e-1661.43Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Pras... [more]
A0A836CMU5_9STRA2.290e-1364.15Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trib... [more]
A0A2R5GGB5_9STRA4.280e-1358.82Ubiquitinyl hydrolase 1 n=1 Tax=Hondaea fermentalg... [more]
A0A7S3F788_9VIRI6.490e-1354.29Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A448ZMX3_9STRA3.670e-1260.00UBP-type domain-containing protein n=1 Tax=Pseudo-... [more]
B7FRR1_PHATC7.080e-1261.11Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phae... [more]
A0A383VCQ9_TETOB9.720e-1252.24Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Scen... [more]
A0A7S0NC19_9CRYP1.320e-1171.43Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Gemi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14772contigH-canaliculatus_F_contig14772:1868..2098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.9e-11
Seed eggNOG ortholog55529.EKX44279
KEGG koko:K11836
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032182,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0036211,GO:0036459,GO:0042176,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0061136,GO:0065007,GO:0070011,GO:0070646,GO:0070647,GO:0071108,GO:0071704,GO:0080090,GO:0101005,GO:0140096,GO:1901564,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:2000058,GO:2000060
EggNOG free text desc.Pfam Zn-finger in ubiquitin-hydrolases and other protein
EggNOG OGsCOG5207@1,KOG0944@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929221.1575353-CDS-H-canaliculatus_F_contig14772:1867..20981622929221.1575353-CDS-H-canaliculatus_F_contig14772:1867..2098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14772 1868..2098 -
1696845723.39944-CDS-H-canaliculatus_F_contig14772:1867..20981696845723.39944-CDS-H-canaliculatus_F_contig14772:1867..2098Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14772 1868..2098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14772.3626.1prot_H-canaliculatus_F_contig14772.3626.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14772 1868..2098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14772.3626.1

>prot_H-canaliculatus_F_contig14772.3626.1 ID=prot_H-canaliculatus_F_contig14772.3626.1|Name=mRNA_H-canaliculatus_F_contig14772.3626.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=77bp
VNQWVADNELVVSKYAESLEHVDSGRKISSDPKTWVCEDSGKTENLWLNL
STGEEAEGESVAKASEGTPAGSLPAR*
back to top

mRNA from alignment at H-canaliculatus_F_contig14772:1868..2098-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14772.3626.1 ID=mRNA_H-canaliculatus_F_contig14772.3626.1|Name=mRNA_H-canaliculatus_F_contig14772.3626.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=231bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14772:1868..2098- (Hapterophycus canaliculatus Oshoro5f female)
GTTAACCAGTGGGTGGCCGATAACGAGCTGGTGGTAAGCAAGTACGCAGA
GAGCCTTGAGCACGTGGACAGCGGACGCAAGATTTCGTCGGACCCGAAGA
CCTGGGTGTGCGAGGACAGCGGGAAGACGGAGAACCTTTGGCTCAACCTC
TCCACGGGTGAGGAGGCGGAGGGCGAAAGTGTGGCCAAAGCCTCCGAGGG
TACCCCGGCTGGCTCCTTGCCTGCACGGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14772:1868..2098-

>mRNA_H-canaliculatus_F_contig14772.3626.1 ID=mRNA_H-canaliculatus_F_contig14772.3626.1|Name=mRNA_H-canaliculatus_F_contig14772.3626.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14772:1868..2098- (Hapterophycus canaliculatus Oshoro5f female)
GTTAACCAGTGGGTGGCCGATAACGAGCTGGTGGTAAGCAAGTACGCAGA
GAGCCTTGAGCACGTGGACAGCGGACGCAAGATTTCGTCGGACCCGAAGA
CCTGGGTGTGCGAGGACAGCGGGAAGACGGAGAACCTTTGGCTCAACCTC
TCCACGGGTGAGGAGGCGGAGGGCGAAAGTGTGGCCAAAGCCTCCGAGGG
TACCCCGGCTGGCTCCTTGCCTGCACGGTAGGTTAACCAGTGGGTGGCCG
ATAACGAGCTGGTGGTAAGCAAGTACGCAGAGAGCCTTGAGCACGTGGAC
AGCGGACGCAAGATTTCGTCGGACCCGAAGACCTGGGTGTGCGAGGACAG
CGGGAAGACGGAGAACCTTTGGCTCAACCTCTCCACGGGTGAGGAGGCGG
AGGGCGAAAGTGTGGCCAAAGCCTCCGAGGGTACCCCGGCTGGCTCCTTG
CCTGCACGGTAG
back to top