mRNA_H-canaliculatus_F_contig14763.3620.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14763.3620.1
Unique NamemRNA_H-canaliculatus_F_contig14763.3620.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14763.3620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14763contigH-canaliculatus_F_contig14763:1822..2473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size653
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.6870918-CDS-H-canaliculatus_F_contig14763:1821..22081622929220.6870918-CDS-H-canaliculatus_F_contig14763:1821..2208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14763 1822..2208 +
1696845723.1847112-CDS-H-canaliculatus_F_contig14763:1821..22081696845723.1847112-CDS-H-canaliculatus_F_contig14763:1821..2208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14763 1822..2208 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.7022247-UTR-H-canaliculatus_F_contig14763:2208..24731622929220.7022247-UTR-H-canaliculatus_F_contig14763:2208..2473Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14763 2209..2473 +
1696845723.1942418-UTR-H-canaliculatus_F_contig14763:2208..24731696845723.1942418-UTR-H-canaliculatus_F_contig14763:2208..2473Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14763 2209..2473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14763.3620.1prot_H-canaliculatus_F_contig14763.3620.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14763 1822..2208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14763.3620.1

>prot_H-canaliculatus_F_contig14763.3620.1 ID=prot_H-canaliculatus_F_contig14763.3620.1|Name=mRNA_H-canaliculatus_F_contig14763.3620.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=129bp
EQGPQFGKFDWRDPLDLRSQLTDEERQIQARTPGAKGEHYLELLLRYCCC
CCRILRFLPRALGGEPFWSSVAFQARLLLPALRANREWCPLVSQYRRFTD
LYHVRRPAYHIVCLCVLASFLGLESACS*
back to top

mRNA from alignment at H-canaliculatus_F_contig14763:1822..2473+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14763.3620.1 ID=mRNA_H-canaliculatus_F_contig14763.3620.1|Name=mRNA_H-canaliculatus_F_contig14763.3620.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=652bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14763:1822..2473+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGGGACCGCAGTTCGGCAAGTTTGACTGGAGAGACCCGCTTGATCT
CCGATCTCAGCTGACCGATGAAGAACGCCAGATACAGGCAAGAACACCCG
GGGCGAAAGGAGAGCACTACCTCGAGCTGTTGCTGCGGTACTGCTGCTGC
TGCTGTCGCATCCTTCGTTTTCTACCTCGTGCACTCGGCGGCGAACCGTT
TTGGAGTAGCGTTGCTTTCCAAGCTCGGCTTCTTTTGCCTGCACTGAGAG
CAAACAGAGAATGGTGCCCCCTGGTTAGCCAGTACCGAAGGTTCACTGAT
CTATACCACGTTCGAAGGCCAGCTTACCATATTGTGTGCCTGTGCGTCCT
CGCAAGCTTCCTGGGTCTAGAATCTGCTTGCTCGTAGGTGGGGCTACGGG
GTTTTCAGGTGTTCGCTTTTAGTCTGCGCGTGTTCACTCGCGAACTGAGT
AAGGGACACACAAGCGAAAGTGACCGAAAGGAAACTTTATCCACGGTAGG
ATATATATTCCCCACGATACAACACCACATATAATGAAAGCAGGAGATGA
CATCTTGGTTTGTAGGTCGTTCGGATGTCGTGGCTCGTCAGATTTGAATC
TTGTACAGCACAGTGTATGCGCGATGAATTAGTCCATATCAACCCCCCCC
CC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14763:1822..2473+

>mRNA_H-canaliculatus_F_contig14763.3620.1 ID=mRNA_H-canaliculatus_F_contig14763.3620.1|Name=mRNA_H-canaliculatus_F_contig14763.3620.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=774bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14763:1822..2473+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGGGACCGCAGTTCGGCAAGTTTGACTGGAGAGACCCGCTTGATCT
CCGATCTCAGCTGACCGATGAAGAACGCCAGATACAGGCAAGAACACCCG
GGGCGAAAGGAGAGCACTACCTCGAGCTGTTGCTGCGGTACTGCTGCTGC
TGCTGTCGCATCCTTCGTTTTCTACCTCGTGCACTCGGCGGCGAACCGTT
TTGGAGTAGCGTTGCTTTCCAAGCTCGGCTTCTTTTGCCTGCACTGAGAG
CAAACAGAGAATGGTGCCCCCTGGTTAGCCAGTACCGAAGGTTCACTGAT
CTATACCACGTTCGAAGGCCAGCTTACCATATTGTGTGCCTGTGCGTCCT
CGCAAGCTTCCTGGGTCTAGAATCTGCTTGCTCGTAGGAGCAGGGACCGC
AGTTCGGCAAGTTTGACTGGAGAGACCCGCTTGATCTCCGATCTCAGCTG
ACCGATGAAGAACGCCAGATACAGGCAAGAACACCCGGGGCGAAAGGAGA
GCACTACCTCGAGCTGTTGCTGCGGTACTGCTGCTGCTGCTGTCGCATCC
TTCGTTTTCTACCTCGTGCACTCGGCGGCGAACCGTTTTGGAGTAGCGTT
GCTTTCCAAGCTCGGCTTCTTTTGCCTGCACTGAGAGCAAACAGAGAATG
GTGCCCCCTGGTTAGCCAGTACCGAAGGTTCACTGATCTATACCACGTTC
GAAGGCCAGCTTACCATATTGTGTGCCTGTGCGTCCTCGCAAGCTTCCTG
GGTCTAGAATCTGCTTGCTCGTAG
back to top