mRNA_H-canaliculatus_F_contig14758.3616.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14758.3616.1
Unique NamemRNA_H-canaliculatus_F_contig14758.3616.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14758.3616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14758contigH-canaliculatus_F_contig14758:592..2055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size396
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14758.3616.1prot_H-canaliculatus_F_contig14758.3616.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14758 592..2055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929220.125358-CDS-H-canaliculatus_F_contig14758:591..6811622929220.125358-CDS-H-canaliculatus_F_contig14758:591..681Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14758 592..681 -
1696845722.8687963-CDS-H-canaliculatus_F_contig14758:591..6811696845722.8687963-CDS-H-canaliculatus_F_contig14758:591..681Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14758 592..681 -
1622929220.142908-CDS-H-canaliculatus_F_contig14758:1227..14471622929220.142908-CDS-H-canaliculatus_F_contig14758:1227..1447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14758 1228..1447 -
1696845722.8775682-CDS-H-canaliculatus_F_contig14758:1227..14471696845722.8775682-CDS-H-canaliculatus_F_contig14758:1227..1447Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14758 1228..1447 -
1622929220.1591125-CDS-H-canaliculatus_F_contig14758:1969..20551622929220.1591125-CDS-H-canaliculatus_F_contig14758:1969..2055Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14758 1970..2055 -
1696845722.8884356-CDS-H-canaliculatus_F_contig14758:1969..20551696845722.8884356-CDS-H-canaliculatus_F_contig14758:1969..2055Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14758 1970..2055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14758.3616.1

>prot_H-canaliculatus_F_contig14758.3616.1 ID=prot_H-canaliculatus_F_contig14758.3616.1|Name=mRNA_H-canaliculatus_F_contig14758.3616.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
VEGVTVRQRRATAWGTACFQWGGRPRYLRRMDDSARRSRLVETERRRLRQ
PRNSALGADSSRTCSRSRRCSRTRIATSNSDSSTSITSGSSRLLWGWLRL
YPVEWVTVRQRRATAWGTAYFQWDGRPRYLR*
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mRNA from alignment at H-canaliculatus_F_contig14758:592..2055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14758.3616.1 ID=mRNA_H-canaliculatus_F_contig14758.3616.1|Name=mRNA_H-canaliculatus_F_contig14758.3616.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1464bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14758:592..2055- (Hapterophycus canaliculatus Oshoro5f female)
GTGGAAGGGGTCACGGTACGCCAGCGGCGAGCAACGGCATGGGGTACGGC
ATGTTTTCAATGGGGCGGGCGGCCGCGGTACCTTCGGTAAGCGAACGGAG
CAAAATGCTTCGGTTTGCTCTGTATGCGCTCTGGTTAACCTTGCCTTAAT
CTGTGTTTGTTTTCATTCCACCTTCTTCGACAAGGCGAATCAATCACCTC
TGTTGCGCTGGTAGCACGGAGCGGAGCGAGTGGCAGGTCGTCGCCGTTAC
TTTCAAGAAATACCAAGACGTGCATGCTCGGCGAAAAAACAAATGCTCCG
ACCATCACGAGTGGTGACGTACAAGTCAACAACTCAATATCTTCTACTTG
ATGACTGTTCGCGTAGAAGGAATGTGAATCTATCTTTTGGGGGTGGGAAG
AGAGGGCTATGCCTCGCGATGGTGTCCTTGTGTGGCATTCGTTCGCTTGT
ACCTACGATCCCTGCATTCTGGTGATGGTGTATTTGATGTTGTGTCTCAA
GCTCCTCATTTCGCTTTAATGCAGAACTACCTCCTCGTCGAAACCTGTCA
CCGCAAGGTTTGTCCGAACGCCGTCCACGGCCTCCAATTTCGTGTGTCCC
TTCTTCAGGCGGATGGACGATTCGGCCCGTCGAAGTCGGCTCGTCGAGAC
CGAGCGGCGCCGGCTTCGACAGCCACGCAACTCGGCGCTAGGAGCAGATT
CATCCCGTACTTGCAGCCGCAGCCGCAGGTGCAGCCGTACCCGTATCGCA
ACCAGCAACAGCGACAGCAGCACATCCATCACCAGCGGCAGCAGCAGGCT
GCTGTGGGGCTGGCTCCGTCTGTATCCCGTGAGTTTGAATCAACCCCGAA
GTCGTTCATCTATTGCTACTCCTGCTGCTAGCACCGTCTCCGGCATCGGA
CCGTGAGGGCCTGCGTCTCAGGCCACTCGAGCTGGAAGGGTCGTGTTGAC
ACCGGTGCATCCGTATGGCGCCATGTTGGGCCTATTGACCACCGCGACAG
CTCCAACACCCGCGTCGACAACGTCGTCAGCATCAGCAGCCGTCCGTTCC
CGTAAACTGCTTGTTGTCTACCTGCCCGGCCCCCTAGTAAACTGAGACGA
AGCTGGCGGAGATACCACGTTTCTACTTGCACCTCTCTGCGATGGTGTTG
CTATGGTTGGAGATCGCTGGAGAATACGCGATGACGCGCCATGTCGATGA
AAACGTGGGACGTATACGAAGTACGCTTGTACGCCCACACACCGCTCTTG
TCCACTATTCCGCCGCCACCGTGGCATTTATGTGCCTGTCTCGTTGAATG
TTTTCCTCATGGAAGTGACATCTTTCTCGTTGTTTGCTGGCCCCCTCCCG
ATTGGGTCCCTCCCCGCCGCACAGGTGGAATGGGTCACGGTACGCCAGCG
GCGAGCAACGGCATGGGGCACGGCATATTTTCAATGGGACGGGCGGCCGC
GGTACCTTCGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14758:592..2055-

>mRNA_H-canaliculatus_F_contig14758.3616.1 ID=mRNA_H-canaliculatus_F_contig14758.3616.1|Name=mRNA_H-canaliculatus_F_contig14758.3616.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14758:592..2055- (Hapterophycus canaliculatus Oshoro5f female)
GTGGAAGGGGTCACGGTACGCCAGCGGCGAGCAACGGCATGGGGTACGGC
ATGTTTTCAATGGGGCGGGCGGCCGCGGTACCTTCGGTGGAAGGGGTCAC
GGTACGCCAGCGGCGAGCAACGGCATGGGGTACGGCATGTTTTCAATGGG
GCGGGCGGCCGCGGTACCTTCGGCGGATGGACGATTCGGCCCGTCGAAGT
CGGCTCGTCGAGACCGAGCGGCGCCGGCTTCGACAGCCACGCAACTCGGC
GCTAGGAGCAGATTCATCCCGTACTTGCAGCCGCAGCCGCAGGTGCAGCC
GTACCCGTATCGCAACCAGCAACAGCGACAGCAGCACATCCATCACCAGC
GGCAGCAGCAGGCTGCTGTGGGGCTGGCTCCGTCTGTATCCCGCGGATGG
ACGATTCGGCCCGTCGAAGTCGGCTCGTCGAGACCGAGCGGCGCCGGCTT
CGACAGCCACGCAACTCGGCGCTAGGAGCAGATTCATCCCGTACTTGCAG
CCGCAGCCGCAGGTGCAGCCGTACCCGTATCGCAACCAGCAACAGCGACA
GCAGCACATCCATCACCAGCGGCAGCAGCAGGCTGCTGTGGGGCTGGCTC
CGTCTGTATCCCGTGGAATGGGTCACGGTACGCCAGCGGCGAGCAACGGC
ATGGGGCACGGCATATTTTCAATGGGACGGGCGGCCGCGGTACCTTCGGT
AAGTGGAATGGGTCACGGTACGCCAGCGGCGAGCAACGGCATGGGGCACG
GCATATTTTCAATGGGACGGGCGGCCGCGGTACCTTCGGTAA
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