mRNA_H-canaliculatus_F_contig14721.3604.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14721.3604.1
Unique NamemRNA_H-canaliculatus_F_contig14721.3604.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14721.3604.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.200e-58
Identity = 93/111 (83.78%), Postives = 98/111 (88.29%), Query Frame = 1 
Query:    1 GSPDEHGFEYVEHLNDTALDCRDSNLKTSTTLHGNNLHMNRLKRAFWVEGEEGAARKAEEIDRSQESYWNIVRRLPPLPDFVFAFKRFKRPRDSPREVETLQSAGCPTNEQ 333
            GSPDEHGFEYVEHLN  ALDCR+SNL TSTTLHGNNLHMNR K AFWVEG +GAA KAE ++RSQESYWNIVRRLPPLPDFVFAFK  KRPRDS R+VETLQ AGC TNEQ
Sbjct:   52 GSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
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BLAST of mRNA_H-canaliculatus_F_contig14721.3604.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.500e-47
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    1 GSPDEHGFEYVEHLNDTALDCRDSNLKTSTTLHGNNLHMNRLKRAFWVEGEEGAARKAEEIDRSQESYWNIVRRLPPLPDFVFAFKRFKRPRDSPREVETLQSA 312
            GSP+E  F YVEHL+D ALDCR+SNL+TSTT HGNNLHMNRLKRAF  +G  GA RKAEEIDRSQE YW IVR LP LPDFVFAFK  KRPRD PR++ETLQ A
Sbjct:   12 GSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQPA 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14721.3604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPN6_9PHAE1.200e-5883.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPQ6_ECTSI4.500e-4775.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14721contigH-canaliculatus_F_contig14721:1166..1501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.1496756-CDS-H-canaliculatus_F_contig14721:1165..15011622929218.1496756-CDS-H-canaliculatus_F_contig14721:1165..1501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14721 1166..1501 -
1696845722.1978593-CDS-H-canaliculatus_F_contig14721:1165..15011696845722.1978593-CDS-H-canaliculatus_F_contig14721:1165..1501Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14721 1166..1501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14721.3604.1prot_H-canaliculatus_F_contig14721.3604.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14721 1166..1501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14721.3604.1

>prot_H-canaliculatus_F_contig14721.3604.1 ID=prot_H-canaliculatus_F_contig14721.3604.1|Name=mRNA_H-canaliculatus_F_contig14721.3604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
GSPDEHGFEYVEHLNDTALDCRDSNLKTSTTLHGNNLHMNRLKRAFWVEG
EEGAARKAEEIDRSQESYWNIVRRLPPLPDFVFAFKRFKRPRDSPREVET
LQSAGCPTNEQ*
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mRNA from alignment at H-canaliculatus_F_contig14721:1166..1501-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14721.3604.1 ID=mRNA_H-canaliculatus_F_contig14721.3604.1|Name=mRNA_H-canaliculatus_F_contig14721.3604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14721:1166..1501- (Hapterophycus canaliculatus Oshoro5f female)
GGTTCGCCCGACGAGCACGGGTTTGAGTACGTCGAGCACCTTAACGACAC
TGCCCTAGACTGTCGCGACAGCAATTTGAAGACATCCACCACGTTGCACG
GCAACAATCTTCATATGAACAGGTTGAAGCGTGCCTTCTGGGTCGAGGGT
GAAGAAGGCGCTGCACGCAAAGCAGAGGAAATCGATCGATCACAGGAGTC
ATACTGGAACATCGTGCGTCGTCTGCCGCCGCTTCCTGATTTTGTTTTCG
CGTTCAAGCGTTTCAAACGGCCGCGAGATTCACCACGAGAAGTAGAGACG
TTGCAATCAGCAGGGTGTCCTACGAACGAGCAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14721:1166..1501-

>mRNA_H-canaliculatus_F_contig14721.3604.1 ID=mRNA_H-canaliculatus_F_contig14721.3604.1|Name=mRNA_H-canaliculatus_F_contig14721.3604.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14721:1166..1501- (Hapterophycus canaliculatus Oshoro5f female)
GGTTCGCCCGACGAGCACGGGTTTGAGTACGTCGAGCACCTTAACGACAC
TGCCCTAGACTGTCGCGACAGCAATTTGAAGACATCCACCACGTTGCACG
GCAACAATCTTCATATGAACAGGTTGAAGCGTGCCTTCTGGGTCGAGGGT
GAAGAAGGCGCTGCACGCAAAGCAGAGGAAATCGATCGATCACAGGAGTC
ATACTGGAACATCGTGCGTCGTCTGCCGCCGCTTCCTGATTTTGTTTTCG
CGTTCAAGCGTTTCAAACGGCCGCGAGATTCACCACGAGAAGTAGAGACG
TTGCAATCAGCAGGGTGTCCTACGAACGAGCAGTGAGGTTCGCCCGACGA
GCACGGGTTTGAGTACGTCGAGCACCTTAACGACACTGCCCTAGACTGTC
GCGACAGCAATTTGAAGACATCCACCACGTTGCACGGCAACAATCTTCAT
ATGAACAGGTTGAAGCGTGCCTTCTGGGTCGAGGGTGAAGAAGGCGCTGC
ACGCAAAGCAGAGGAAATCGATCGATCACAGGAGTCATACTGGAACATCG
TGCGTCGTCTGCCGCCGCTTCCTGATTTTGTTTTCGCGTTCAAGCGTTTC
AAACGGCCGCGAGATTCACCACGAGAAGTAGAGACGTTGCAATCAGCAGG
GTGTCCTACGAACGAGCAGTGA
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