mRNA_H-canaliculatus_F_contig1471.3597.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1471.3597.1
Unique NamemRNA_H-canaliculatus_F_contig1471.3597.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1471.3597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1471contigH-canaliculatus_F_contig1471:16381..16866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1471.3597.1prot_H-canaliculatus_F_contig1471.3597.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1471 16494..16823 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.3166752-UTR-H-canaliculatus_F_contig1471:16380..164931622929217.3166752-UTR-H-canaliculatus_F_contig1471:16380..16493Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 16381..16493 +
1696845721.8217201-UTR-H-canaliculatus_F_contig1471:16380..164931696845721.8217201-UTR-H-canaliculatus_F_contig1471:16380..16493Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 16381..16493 +
1622929217.3921456-UTR-H-canaliculatus_F_contig1471:16823..168661622929217.3921456-UTR-H-canaliculatus_F_contig1471:16823..16866Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 16824..16866 +
1696845721.8433733-UTR-H-canaliculatus_F_contig1471:16823..168661696845721.8433733-UTR-H-canaliculatus_F_contig1471:16823..16866Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1471 16824..16866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929217.3307426-CDS-H-canaliculatus_F_contig1471:16493..168231622929217.3307426-CDS-H-canaliculatus_F_contig1471:16493..16823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1471 16494..16823 +
1696845721.8316193-CDS-H-canaliculatus_F_contig1471:16493..168231696845721.8316193-CDS-H-canaliculatus_F_contig1471:16493..16823Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1471 16494..16823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1471.3597.1

>prot_H-canaliculatus_F_contig1471.3597.1 ID=prot_H-canaliculatus_F_contig1471.3597.1|Name=mRNA_H-canaliculatus_F_contig1471.3597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
MPGCASLPDGSHLSSTAWNMLGSPRPKTLGILESPKTQLCRGHISRAPDF
VLAEICVKESGDVRNLDEVKRLFLSQVEHSFLHRHQAVPTFVYPLTHTLA
VVHQNTNFV*
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mRNA from alignment at H-canaliculatus_F_contig1471:16381..16866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1471.3597.1 ID=mRNA_H-canaliculatus_F_contig1471.3597.1|Name=mRNA_H-canaliculatus_F_contig1471.3597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1471:16381..16866+ (Hapterophycus canaliculatus Oshoro5f female)
CGGGATGCCGAACCAGCTGTCTCGGAGTGGCGCTGCCAGGGCAAGTTGTG
TTTTCGTCGCTGGGATAGAGATGAAAATGTGAAGCGAGGTCTGTTCTGAA
GTTATCAGCGGCAATGCCAGGGTGTGCGTCTCTTCCCGATGGTTCCCATT
TGTCCTCCACTGCTTGGAACATGCTCGGTTCGCCACGACCCAAAACCTTG
GGCATTTTGGAAAGCCCAAAGACTCAGCTCTGTCGGGGGCACATCAGCAG
AGCACCTGATTTTGTCCTCGCCGAGATTTGTGTGAAAGAGTCAGGCGACG
TCCGAAATCTCGATGAAGTCAAACGGCTTTTCCTGTCGCAGGTGGAACAT
TCATTTTTACACCGCCACCAAGCAGTTCCCACGTTTGTTTACCCGTTAAC
ACACACGTTGGCCGTTGTACACCAAAACACCAACTTTGTTTGATTTTTCA
GCCATGAGAAAAATTCGGTAAAACAGCCCCCAATAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1471:16381..16866+

>mRNA_H-canaliculatus_F_contig1471.3597.1 ID=mRNA_H-canaliculatus_F_contig1471.3597.1|Name=mRNA_H-canaliculatus_F_contig1471.3597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1471:16381..16866+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCAGGGTGTGCGTCTCTTCCCGATGGTTCCCATTTGTCCTCCACTGC
TTGGAACATGCTCGGTTCGCCACGACCCAAAACCTTGGGCATTTTGGAAA
GCCCAAAGACTCAGCTCTGTCGGGGGCACATCAGCAGAGCACCTGATTTT
GTCCTCGCCGAGATTTGTGTGAAAGAGTCAGGCGACGTCCGAAATCTCGA
TGAAGTCAAACGGCTTTTCCTGTCGCAGGTGGAACATTCATTTTTACACC
GCCACCAAGCAGTTCCCACGTTTGTTTACCCGTTAACACACACGTTGGCC
GTTGTACACCAAAACACCAACTTTGTTTGAATGCCAGGGTGTGCGTCTCT
TCCCGATGGTTCCCATTTGTCCTCCACTGCTTGGAACATGCTCGGTTCGC
CACGACCCAAAACCTTGGGCATTTTGGAAAGCCCAAAGACTCAGCTCTGT
CGGGGGCACATCAGCAGAGCACCTGATTTTGTCCTCGCCGAGATTTGTGT
GAAAGAGTCAGGCGACGTCCGAAATCTCGATGAAGTCAAACGGCTTTTCC
TGTCGCAGGTGGAACATTCATTTTTACACCGCCACCAAGCAGTTCCCACG
TTTGTTTACCCGTTAACACACACGTTGGCCGTTGTACACCAAAACACCAA
CTTTGTTTGA
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