mRNA_H-canaliculatus_F_contig14705.3594.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14705.3594.1
Unique NamemRNA_H-canaliculatus_F_contig14705.3594.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14705.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14705contigH-canaliculatus_F_contig14705:1180..2091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size912
Cds size810
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929216.1585302-UTR-H-canaliculatus_F_contig14705:1179..12811622929216.1585302-UTR-H-canaliculatus_F_contig14705:1179..1281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14705 1180..1281 +
1696845721.7858362-UTR-H-canaliculatus_F_contig14705:1179..12811696845721.7858362-UTR-H-canaliculatus_F_contig14705:1179..1281Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14705 1180..1281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929216.1876793-CDS-H-canaliculatus_F_contig14705:1281..20911622929216.1876793-CDS-H-canaliculatus_F_contig14705:1281..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14705 1282..2091 +
1696845721.7970695-CDS-H-canaliculatus_F_contig14705:1281..20911696845721.7970695-CDS-H-canaliculatus_F_contig14705:1281..2091Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14705 1282..2091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14705.3594.1prot_H-canaliculatus_F_contig14705.3594.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14705 1282..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14705.3594.1

>prot_H-canaliculatus_F_contig14705.3594.1 ID=prot_H-canaliculatus_F_contig14705.3594.1|Name=mRNA_H-canaliculatus_F_contig14705.3594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=270bp
MLLRFLDKSIYGGPPGHDDIGRCYPDHRRTSAASAERPCGVFNPRNETPE
TKGCRFSSAVGASCSERYLTVRGRVLPCANSPAVQGRAGVGGGEDASVGA
ERKKRNIKRRGDEDRDCRHSCVQRQQTRRRESSLTPLASCLRAAQNVFGE
NLLALLKWRGLLRQLLGISSSVLEKSWSSASTYTMYPCCWELDRKLEIRL
ARHPYQEEAFLPQCYVFLQKLRFELSHDDDDDGEDDEQHTHPEPVGHRRR
GRGGVQPLSSLQPRQQVLEL
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mRNA from alignment at H-canaliculatus_F_contig14705:1180..2091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14705.3594.1 ID=mRNA_H-canaliculatus_F_contig14705.3594.1|Name=mRNA_H-canaliculatus_F_contig14705.3594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=912bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14705:1180..2091+ (Hapterophycus canaliculatus Oshoro5f female)
GGACGATGAAGCAGGACCACCTGTTGCGGGCTAAACAATGAACCTGTGAT
GCCTCACCTCTTCCCTCCCCCAAAAAGGAAACAGACACATTAAACGCATC
TGATGCTTTTGCGATTCCTTGATAAGAGTATCTATGGCGGACCACCCGGT
CATGACGACATTGGTCGCTGCTATCCGGACCATCGAAGAACGTCGGCCGC
GTCGGCCGAACGGCCGTGCGGCGTCTTCAACCCCCGAAACGAAACCCCCG
AGACGAAAGGGTGTCGGTTCTCCTCGGCCGTGGGGGCATCTTGCTCGGAG
CGGTATCTGACGGTGCGCGGGCGCGTACTCCCGTGTGCGAACAGCCCCGC
GGTGCAAGGCCGCGCGGGGGTGGGGGGAGGGGAAGACGCCTCCGTCGGAG
CGGAACGAAAGAAGAGAAACATAAAAAGGAGGGGCGACGAGGACCGAGAC
TGCCGCCACTCGTGCGTACAGCGTCAGCAAACGAGACGACGAGAGTCCTC
GCTCACACCCCTTGCTTCTTGCTTACGGGCCGCACAAAACGTCTTCGGTG
AAAATCTTCTCGCTCTGCTGAAATGGAGGGGTTTGCTTCGCCAACTCCTC
GGCATCAGCTCTTCAGTCCTCGAGAAAAGTTGGAGCTCCGCGAGTACTTA
CACGATGTACCCCTGCTGTTGGGAACTCGACAGAAAACTTGAGATACGTC
TCGCACGACATCCCTATCAGGAGGAGGCGTTCCTACCGCAATGTTACGTC
TTTCTTCAAAAGTTGCGGTTCGAATTGTCGCACGACGACGACGACGACGG
CGAAGACGACGAGCAGCACACTCACCCCGAACCCGTCGGTCACAGAAGAC
GCGGCCGCGGCGGCGTCCAGCCCCTCTCCTCGCTCCAGCCCCGCCAACAA
GTCCTCGAACTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14705:1180..2091+

>mRNA_H-canaliculatus_F_contig14705.3594.1 ID=mRNA_H-canaliculatus_F_contig14705.3594.1|Name=mRNA_H-canaliculatus_F_contig14705.3594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1620bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14705:1180..2091+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTTTTGCGATTCCTTGATAAGAGTATCTATGGCGGACCACCCGGTCA
TGACGACATTGGTCGCTGCTATCCGGACCATCGAAGAACGTCGGCCGCGT
CGGCCGAACGGCCGTGCGGCGTCTTCAACCCCCGAAACGAAACCCCCGAG
ACGAAAGGGTGTCGGTTCTCCTCGGCCGTGGGGGCATCTTGCTCGGAGCG
GTATCTGACGGTGCGCGGGCGCGTACTCCCGTGTGCGAACAGCCCCGCGG
TGCAAGGCCGCGCGGGGGTGGGGGGAGGGGAAGACGCCTCCGTCGGAGCG
GAACGAAAGAAGAGAAACATAAAAAGGAGGGGCGACGAGGACCGAGACTG
CCGCCACTCGTGCGTACAGCGTCAGCAAACGAGACGACGAGAGTCCTCGC
TCACACCCCTTGCTTCTTGCTTACGGGCCGCACAAAACGTCTTCGGTGAA
AATCTTCTCGCTCTGCTGAAATGGAGGGGTTTGCTTCGCCAACTCCTCGG
CATCAGCTCTTCAGTCCTCGAGAAAAGTTGGAGCTCCGCGAGTACTTACA
CGATGTACCCCTGCTGTTGGGAACTCGACAGAAAACTTGAGATACGTCTC
GCACGACATCCCTATCAGGAGGAGGCGTTCCTACCGCAATGTTACGTCTT
TCTTCAAAAGTTGCGGTTCGAATTGTCGCACGACGACGACGACGACGGCG
AAGACGACGAGCAGCACACTCACCCCGAACCCGTCGGTCACAGAAGACGC
GGCCGCGGCGGCGTCCAGCCCCTCTCCTCGCTCCAGCCCCGCCAACAAGT
CCTCGAACTCATGCTTTTGCGATTCCTTGATAAGAGTATCTATGGCGGAC
CACCCGGTCATGACGACATTGGTCGCTGCTATCCGGACCATCGAAGAACG
TCGGCCGCGTCGGCCGAACGGCCGTGCGGCGTCTTCAACCCCCGAAACGA
AACCCCCGAGACGAAAGGGTGTCGGTTCTCCTCGGCCGTGGGGGCATCTT
GCTCGGAGCGGTATCTGACGGTGCGCGGGCGCGTACTCCCGTGTGCGAAC
AGCCCCGCGGTGCAAGGCCGCGCGGGGGTGGGGGGAGGGGAAGACGCCTC
CGTCGGAGCGGAACGAAAGAAGAGAAACATAAAAAGGAGGGGCGACGAGG
ACCGAGACTGCCGCCACTCGTGCGTACAGCGTCAGCAAACGAGACGACGA
GAGTCCTCGCTCACACCCCTTGCTTCTTGCTTACGGGCCGCACAAAACGT
CTTCGGTGAAAATCTTCTCGCTCTGCTGAAATGGAGGGGTTTGCTTCGCC
AACTCCTCGGCATCAGCTCTTCAGTCCTCGAGAAAAGTTGGAGCTCCGCG
AGTACTTACACGATGTACCCCTGCTGTTGGGAACTCGACAGAAAACTTGA
GATACGTCTCGCACGACATCCCTATCAGGAGGAGGCGTTCCTACCGCAAT
GTTACGTCTTTCTTCAAAAGTTGCGGTTCGAATTGTCGCACGACGACGAC
GACGACGGCGAAGACGACGAGCAGCACACTCACCCCGAACCCGTCGGTCA
CAGAAGACGCGGCCGCGGCGGCGTCCAGCCCCTCTCCTCGCTCCAGCCCC
GCCAACAAGTCCTCGAACTC
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