mRNA_H-canaliculatus_F_contig14693.3585.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14693.3585.1
Unique NamemRNA_H-canaliculatus_F_contig14693.3585.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14693.3585.1 vs. uniprot
Match: D8LSH3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH3_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.420e-18
Identity = 81/179 (45.25%), Postives = 95/179 (53.07%), Query Frame = 1 
Query:   64 SAVSGDAAGARLPDKVIDALGE---VTAGGGDSDEVLSRRRKSRERARAMGLLAKGKMRWSESQSTNSGDSLNGDNTGAVAGAGGAKAEGPVDGDARGKGGDGAGTQAL-QALLRDAQDREKAMQKEMXXXXXXXXXXXXELVNGLAGARKIHAQLKERKQREQELRATNAILQAKVAA 588
            S  +G   G  LP+KV+ A G+       GGD  +VLSRRRKSRERARAMG+LA                              GA          RG     A +Q L   LLR+AQ +EKAM +EM            ELVNGLAGARKI AQLK+ KQREQELRATN+ILQAK+A+
Sbjct:  166 SLSNGGGVGFELPEKVVRAFGDGGGAAPPGGDGQDVLSRRRKSRERARAMGMLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXRGS----ADSQMLLSTLLREAQAKEKAMLREMEEMRAREQTMRGELVNGLAGARKIFAQLKQGKQREQELRATNSILQAKIAS 340
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BLAST of mRNA_H-canaliculatus_F_contig14693.3585.1 vs. uniprot
Match: A0A6H5L8P8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8P8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.020e-11
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  379 LQALLRDAQDREKAMQKEMXXXXXXXXXXXXELVNGLAGARKIHAQLKERKQREQELRATNAILQAKVAA 588
            L   LR+A+ +EKAM +EM            ELVNGLAGARKI+AQLKE +QREQELRATN+ILQAK+A+
Sbjct:  853 LSTRLREARAKEKAMLREMEEMRAREQTMRGELVNGLAGARKIYAQLKEGRQREQELRATNSILQAKIAS 922
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14693.3585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSH3_ECTSI2.420e-1845.25Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5L8P8_9PHAE3.020e-1161.43Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14693contigH-canaliculatus_F_contig14693:65..2167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue4.1e-19
Seed eggNOG ortholog2880.D8LSH3
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size777
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14693.3585.1prot_H-canaliculatus_F_contig14693.3585.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14693 66..2167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.6190639-CDS-H-canaliculatus_F_contig14693:65..1671622929214.6190639-CDS-H-canaliculatus_F_contig14693:65..167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14693 66..167 -
1696845720.9742188-CDS-H-canaliculatus_F_contig14693:65..1671696845720.9742188-CDS-H-canaliculatus_F_contig14693:65..167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14693 66..167 -
1622929214.6343586-CDS-H-canaliculatus_F_contig14693:812..10461622929214.6343586-CDS-H-canaliculatus_F_contig14693:812..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14693 813..1046 -
1696845720.9860399-CDS-H-canaliculatus_F_contig14693:812..10461696845720.9860399-CDS-H-canaliculatus_F_contig14693:812..1046Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14693 813..1046 -
1622929214.646916-CDS-H-canaliculatus_F_contig14693:1729..21671622929214.646916-CDS-H-canaliculatus_F_contig14693:1729..2167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14693 1730..2167 -
1696845720.9952207-CDS-H-canaliculatus_F_contig14693:1729..21671696845720.9952207-CDS-H-canaliculatus_F_contig14693:1729..2167Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14693 1730..2167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14693.3585.1

>prot_H-canaliculatus_F_contig14693.3585.1 ID=prot_H-canaliculatus_F_contig14693.3585.1|Name=mRNA_H-canaliculatus_F_contig14693.3585.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=258bp
RVAENSPEAGGFPREKQNGVLSAVSGDAAGARLPDKVIDALGEVTAGGGD
SDEVLSRRRKSRERARAMGLLAKGKMRWSESQSTNSGDSLNGDNTGAVAG
AGGAKAEGPVDGDARGKGGDGAGTQALQALLRDAQDREKAMQKEMEEMRE
REQIMRKELVNGLAGARKIHAQLKERKQREQELRATNAILQAKVAAPAPP
PTSVAANGVVNGGGGGGGGGRRERGGGVAGAGRKIRGGAASLQTTTNARP
AAAAAGPG
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mRNA from alignment at H-canaliculatus_F_contig14693:65..2167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14693.3585.1 ID=mRNA_H-canaliculatus_F_contig14693.3585.1|Name=mRNA_H-canaliculatus_F_contig14693.3585.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2103bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14693:65..2167- (Hapterophycus canaliculatus Oshoro5f female)
AGGGTGGCCGAGAACAGCCCGGAAGCGGGAGGGTTTCCACGGGAGAAACA
AAATGGCGTTCTGTCTGCGGTGAGCGGCGATGCCGCCGGGGCCAGGCTCC
CCGACAAGGTGATTGACGCATTAGGAGAGGTGACCGCCGGTGGCGGCGAC
AGCGACGAAGTCCTCAGCCGGAGGAGGAAGAGCAGGGAAAGAGCCCGTGC
CATGGGCTTGTTGGCGAAGGGGAAGATGCGCTGGAGCGAGAGCCAGAGCA
CCAACAGCGGAGACAGCCTGAACGGCGATAACACCGGCGCCGTGGCCGGC
GCCGGCGGCGCAAAGGCAGAGGGCCCCGTGGACGGGGACGCTAGAGGCAA
GGGGGGGGATGGCGCAGGGACGCAAGCATTACAGGCGCTGCTACGGGACG
CGCAAGACAGGGAGAAAGCTATGCAGAAGGAGATGGAGGTGCGTCGTAGA
TGCTTGTTAGCACGTCTCCGAGTGGATGTTTCCTAGACGTGGCCGTGTCG
CAGGGCTGCTGCCGATGCCGACGCTGTGCCGCTGCGGCGCCACGCCGATG
CGGCGCGCCAGGCGGCGCGGCGCAGAGCCGTCGAGCACAGACAAAACCCG
AAGCCGTGCGGCAAGAGGCGCCCGGACACGCTCGCGATCCCTGGATCATG
GCGCTCGTCTCGGCGCGGGCGCGCCCCCGGGTGCGTCGAGGGTCTTCGGC
GAGAGGGGTGGCGCAGGAGCGGTGGCAGCCTCGCCGAACGCGAGGGATTC
GGTGCGGGGGTGGGTGGGTCCGTGCCTGCCGCTCGCGACAGATGTCTTCT
GCGAGCAGCCGGGCAAACTGCAGCAACCACTCTTTTTGCCTTTCTCTCGT
CGTCGTGCCGGGGAAGGAAGAGGACGCCTGCGGGGCAAATCGGAGAAAAA
ATTCTATGCGACGCACGTCACATCAAGTTGTCACTGCTGAGATTTTCGGC
GGCGGTGAAGGCCCCAAACTTTTAGCTGCGATCGTCGCGGCGAAAAGCGA
GGTAACGGTGATCGCGAGCAAGGTCTGGTAGTAGAGGCGCACACGCTTTT
ATTTTTTTTTGTGTCCTCGTGCAGCCACGACTGACCACCAATCGGCACCG
CGCCGAACCCGCGCGCGCCAGGAAATGCGAGAGAGGGAGCAGATCATGCG
CAAGGAGCTGGTCAACGGCCTGGCGGGGGCCCGCAAGATCCACGCGCAGC
TCAAGGAGAGGAAGCAGCGGGAGCAAGAGCTGCGCGCGACGAACGCCATT
CTGCAGGCCAAGGTTGCCGCGCCCGCGCCGCCGCCGACCTCGGTAGCCGC
CAACGGGGTCGTCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGAGAG
AGCGGGTGAGGCTCGGCGAGGACGGTCTCGGTCGGGGGGTTGGTGATCTA
TGTGTGTGTCTCTCTCCCCCTTCGTTGCTGTAGCCCTGATTCGGGGGTCG
GACGAGAGGTGGTTGTGTATCCCTCTTTCCTTCGGGGCAAAGCGTTTCAC
GGCTGCGTGCGGAAAAGTGTGGGACATGCGTCTTGTCTGGTTCCTGCTTT
GAGCGACTTGTCAGCCAAGGCCGAAAAAGGTGACGCGAAGTTGCACGACG
GGCGCATGGCGGGTAGGGCCGGGCTCGCGAGGGGGGATCACGCGGAGGGT
GGGGTGCCTGGCATGCCGGGGTGTTACTCGTTGCGGCACGCACGGCCCTC
CCGCAAATTCTGTTTCTCGAGCGTCATTTGTGACTGCTTCCCTCGCGTGA
AGATGCCTCCCGGCTTGGTGACTCCGAGTCAGTCCAAGGCTCTCCCCTTT
TCCACGAAGCGGGTAGCGATTTCTTCCGACGCCTCGCAGGCGTGGTGTGC
CCGGCTCGACGCCGCTCGACCCCATCCGTCGTACGCACACACCACCACCA
ACCGCTCGAACCACCACCACGAGAGAGAACCGTCTCGTGCTCTCCGACCC
TTCCAACGAACGCTCCCCGAAATCAAACCCACGCTTTCCGCCGCGCGCAG
GGGGGTGGCGTGGCAGGCGCAGGAAGAAAAATCCGAGGAGGAGCAGCTTC
CCTCCAGACCACCACCAACGCGCGCCCAGCCGCCGCGGCCGCCGGCCCGG
GCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14693:65..2167-

>mRNA_H-canaliculatus_F_contig14693.3585.1 ID=mRNA_H-canaliculatus_F_contig14693.3585.1|Name=mRNA_H-canaliculatus_F_contig14693.3585.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1548bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14693:65..2167- (Hapterophycus canaliculatus Oshoro5f female)
AGGGTGGCCGAGAACAGCCCGGAAGCGGGAGGGTTTCCACGGGAGAAACA
AAATGGCGTTCTGTCTGCGGTGAGCGGCGATGCCGCCGGGGCCAGGCTCC
CCGACAAGGTGATTGACGCATTAGGAGAGGTGACCGCCGGTGGCGGCGAC
AGCGACGAAGTCCTCAGCCGGAGGAGGAAGAGCAGGGAAAGAGCCCGTGC
CATGGGCTTGTTGGCGAAGGGGAAGATGCGCTGGAGCGAGAGCCAGAGCA
CCAACAGCGGAGACAGCCTGAACGGCGATAACACCGGCGCCGTGGCCGGC
GCCGGCGGCGCAAAGGCAGAGGGCCCCGTGGACGGGGACGCTAGAGGCAA
GGGGGGGGATGGCGCAGGGACGCAAGCATTACAGGCGCTGCTACGGGACG
CGCAAGACAGGGAGAAAGCTATGCAGAAGGAGATGGAGAGGGTGGCCGAG
AACAGCCCGGAAGCGGGAGGGTTTCCACGGGAGAAACAAAATGGCGTTCT
GTCTGCGGTGAGCGGCGATGCCGCCGGGGCCAGGCTCCCCGACAAGGTGA
TTGACGCATTAGGAGAGGTGACCGCCGGTGGCGGCGACAGCGACGAAGTC
CTCAGCCGGAGGAGGAAGAGCAGGGAAAGAGCCCGTGCCATGGGCTTGTT
GGCGAAGGGGAAGATGCGCTGGAGCGAGAGCCAGAGCACCAACAGCGGAG
ACAGCCTGAACGGCGATAACACCGGCGCCGTGGCCGGCGCCGGCGGCGCA
AAGGCAGAGGGCCCCGTGGACGGGGACGCTAGAGGCAAGGGGGGGGATGG
CGCAGGGACGCAAGCATTACAGGCGCTGCTACGGGACGCGCAAGACAGGG
AGAAAGCTATGCAGAAGGAGATGGAGGAAATGCGAGAGAGGGAGCAGATC
ATGCGCAAGGAGCTGGTCAACGGCCTGGCGGGGGCCCGCAAGATCCACGC
GCAGCTCAAGGAGAGGAAGCAGCGGGAGCAAGAGCTGCGCGCGACGAACG
CCATTCTGCAGGCCAAGGTTGCCGCGCCCGCGCCGCCGCCGACCTCGGTA
GCCGCCAACGGGGTCGTCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCAG
GAGAGAGCGGGAAATGCGAGAGAGGGAGCAGATCATGCGCAAGGAGCTGG
TCAACGGCCTGGCGGGGGCCCGCAAGATCCACGCGCAGCTCAAGGAGAGG
AAGCAGCGGGAGCAAGAGCTGCGCGCGACGAACGCCATTCTGCAGGCCAA
GGTTGCCGCGCCCGCGCCGCCGCCGACCTCGGTAGCCGCCAACGGGGTCG
TCAACGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGAGAGAGCGGGGGGGT
GGCGTGGCAGGCGCAGGAAGAAAAATCCGAGGAGGAGCAGCTTCCCTCCA
GACCACCACCAACGCGCGCCCAGCCGCCGCGGCCGCCGGCCCGGGCGGGG
GTGGCGTGGCAGGCGCAGGAAGAAAAATCCGAGGAGGAGCAGCTTCCCTC
CAGACCACCACCAACGCGCGCCCAGCCGCCGCGGCCGCCGGCCCGGGC
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