mRNA_H-canaliculatus_F_contig14688.3582.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14688.3582.1
Unique NamemRNA_H-canaliculatus_F_contig14688.3582.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: D7FJC4_ECTSI (DNA repair helicase rad5,16, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC4_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 5.770e-46
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:   25 PGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
            P GGLLGVRW RVILDEAHSIRNT+T+QSRACL+LEADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWR+VI+DPYK
Sbjct:  624 PAGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 705
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A6H5KHD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHD4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 5.780e-45
Identity = 75/84 (89.29%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:   22 YPG-GGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
            Y G GGLLGVRW RVILDEAHSIRNT+T+QSRACL+LEADQRWAVTGTPIQNSLDD+AALLAFLRHEPWSDRGWWR+VI+DPYK
Sbjct:  999 YQGVGGLLGVRWSRVILDEAHSIRNTNTEQSRACLRLEADQRWAVTGTPIQNSLDDMAALLAFLRHEPWSDRGWWRKVISDPYK 1082
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: W7T2G0_9STRA (Snf2 family helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T2G0_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.470e-32
Identity = 50/79 (63.29%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   34 GLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
            GL GVRW RV+LDEAH+I+N  T+  RA   LEA +RWA+TGTPIQN LDDV +LL FLRH+PW D  WWR+VI++P++
Sbjct:   42 GLFGVRWGRVVLDEAHTIKNQGTEAFRAAFALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVISEPFQ 120
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A836CF42_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF42_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.330e-31
Identity = 57/86 (66.28%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    1 GDGNGGLYPGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIA 258
            GDG G      GLLG+RWRRVILDEAH+I+N  T+ +RA   L A+ RWAVTGTPIQNSL+D+ AL+ FLRHEPWSD  WW RVIA
Sbjct: 1043 GDGGGTKARVSGLLGLRWRRVILDEAHTIKNATTETARAAFMLRAESRWAVTGTPIQNSLEDLLALVRFLRHEPWSDPVWWNRVIA 1128
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A5A8D5B7_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5B7_CAFRO)

HSP 1 Score: 119 bits (299), Expect = 1.840e-29
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV 273
            + G RWRRV+LDEAH+I+NT T  SR+CL +EA  RWA+TGTP+QNSL D+ +L+ F+RH+PW +  WWRRVIA P++ 
Sbjct:  224 VYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEA 302
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A5A8CW93_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CW93_CAFRO)

HSP 1 Score: 119 bits (299), Expect = 1.850e-29
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV 273
            + G RWRRV+LDEAH+I+NT T  SR+CL +EA  RWA+TGTP+QNSL D+ +L+ F+RH+PW +  WWRRVIA P++ 
Sbjct:   55 VYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEA 133
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A5A8CAC5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CAC5_CAFRO)

HSP 1 Score: 119 bits (299), Expect = 1.870e-29
Identity = 47/79 (59.49%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV 273
            + G RWRRV+LDEAH+I+NT T  SR+CL +EA  RWA+TGTP+QNSL D+ +L+ F+RH+PW +  WWRRVIA P++ 
Sbjct:  258 VYGARWRRVVLDEAHAIKNTSTDTSRSCLAIEAVHRWALTGTPVQNSLKDLHSLVRFMRHQPWDEPAWWRRVIAQPFEA 336
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BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A4D9CS79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS79_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.580e-29
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:   34 GLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
            GL GVRW RV+LDEAH+I+N  T+  RA   LEA +RWA+TGTPIQN LDDV +LL FLRH+PW D  WWR+VIA+P++
Sbjct:  928 GLFGVRWGRVVLDEAHTIKNQGTEAFRAAYALEASRRWALTGTPIQNVLDDVFSLLRFLRHQPWDDPVWWRKVIAEPFQ 1006
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A8K1CQ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQ45_PYTOL)

HSP 1 Score: 112 bits (279), Expect = 9.370e-27
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   37 LLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
            LLG  W RVILDEAHSI+N  T   RAC  L+A  RW +TGTPIQNSL D+ +LL FLR+EPWS   WW+RVIA+P++
Sbjct:  558 LLGTEWDRVILDEAHSIKNRATTYFRACAALQAVHRWCLTGTPIQNSLSDLFSLLCFLRYEPWSRVAWWKRVIANPFE 635
[Close]
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Match: A0A7J7QN53_9CHLO (SNF2 family N-terminal domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QN53_9CHLO)

HSP 1 Score: 110 bits (276), Expect = 2.370e-26
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    7 GNGGLYPGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWAVTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYK 270
            G+ GL  GGGLLG +W RV+LDEAH+IRN++T+Q++AC  L+A +RWAVTGTP+QN L DV  LL FL  +P  DR +WRR +  P +
Sbjct:  409 GDVGLRGGGGLLGQQWLRVVLDEAHTIRNSETQQAKACRALKAQRRWAVTGTPLQNRLADVYGLLVFLGLKPLDDRAFWRRCVERPLR 496
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14688.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC4_ECTSI5.770e-4690.24DNA repair helicase rad5,16, putative n=1 Tax=Ecto... [more]
A0A6H5KHD4_9PHAE5.780e-4589.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7T2G0_9STRA1.470e-3263.29Snf2 family helicase n=1 Tax=Nannochloropsis gadit... [more]
A0A836CF42_9STRA3.330e-3166.28SNF2 family N-terminal domain-containing protein n... [more]
A0A5A8D5B7_CAFRO1.840e-2959.49Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CW93_CAFRO1.850e-2959.49Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A5A8CAC5_CAFRO1.870e-2959.49Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A4D9CS79_9STRA2.580e-2964.56Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K1CQ45_PYTOL9.370e-2762.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7J7QN53_9CHLO2.370e-2656.82SNF2 family N-terminal domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14688contigH-canaliculatus_F_contig14688:575..1130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.4
Seed ortholog evalue6.3e-39
Seed eggNOG ortholog2880.D7FJC4
KEGG koko:K15173,ko:K15711
KEGG Pathwayko04918,map04918
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929214.1907074-CDS-H-canaliculatus_F_contig14688:574..7421622929214.1907074-CDS-H-canaliculatus_F_contig14688:574..742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14688 575..742 -
1696845720.7905543-CDS-H-canaliculatus_F_contig14688:574..7421696845720.7905543-CDS-H-canaliculatus_F_contig14688:574..742Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14688 575..742 -
1622929214.2067735-CDS-H-canaliculatus_F_contig14688:1022..11301622929214.2067735-CDS-H-canaliculatus_F_contig14688:1022..1130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14688 1023..1130 -
1696845720.80121-CDS-H-canaliculatus_F_contig14688:1022..11301696845720.80121-CDS-H-canaliculatus_F_contig14688:1022..1130Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14688 1023..1130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14688.3582.1prot_H-canaliculatus_F_contig14688.3582.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14688 575..1130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14688.3582.1

>prot_H-canaliculatus_F_contig14688.3582.1 ID=prot_H-canaliculatus_F_contig14688.3582.1|Name=mRNA_H-canaliculatus_F_contig14688.3582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
GDGNGGLYPGGGLLGVRWRRVILDEAHSIRNTDTKQSRACLQLEADQRWA
VTGTPIQNSLDDVAALLAFLRHEPWSDRGWWRRVIADPYKV*
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mRNA from alignment at H-canaliculatus_F_contig14688:575..1130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14688.3582.1 ID=mRNA_H-canaliculatus_F_contig14688.3582.1|Name=mRNA_H-canaliculatus_F_contig14688.3582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=556bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14688:575..1130- (Hapterophycus canaliculatus Oshoro5f female)
GGGGACGGCAACGGTGGTCTCTACCCCGGCGGGGGGCTCCTGGGCGTGCG
GTGGAGGCGTGTGATCTTGGACGAGGCCCACTCCATCCGTAACACCGACA
CCAAGCAGGTGCCACACGCGATGCACGGGTCGTTTTGGGAGAGCTTCGGG
TTGACTGAGGTTTCGCCTGCTGCAGGCGTGTGTGCGGGGGGGGGGGGCTT
TATGCGCTCGTGGACCGATCAACGACATGATCGCACACAACGGGCAGGAC
CTGTCATCTGTAGGGAATGACAACCTGCAGATTAATTATAACAGCAACGT
CAAATAGCAGCAGCAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAGTCTCGAGCCTGC
CTGCAGCTGGAGGCGGATCAGAGGTGGGCCGTGACCGGCACGCCTATACA
GAATAGCCTTGACGACGTGGCCGCTCTGCTGGCCTTCCTACGGCACGAGC
CTTGGAGCGACCGCGGCTGGTGGAGGAGGGTCATCGCCGACCCCTACAAG
GTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14688:575..1130-

>mRNA_H-canaliculatus_F_contig14688.3582.1 ID=mRNA_H-canaliculatus_F_contig14688.3582.1|Name=mRNA_H-canaliculatus_F_contig14688.3582.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14688:575..1130- (Hapterophycus canaliculatus Oshoro5f female)
GGGGACGGCAACGGTGGTCTCTACCCCGGCGGGGGGCTCCTGGGCGTGCG
GTGGAGGCGTGTGATCTTGGACGAGGCCCACTCCATCCGTAACACCGACA
CCAAGCAGGGGGACGGCAACGGTGGTCTCTACCCCGGCGGGGGGCTCCTG
GGCGTGCGGTGGAGGCGTGTGATCTTGGACGAGGCCCACTCCATCCGTAA
CACCGACACCAAGCAGTCTCGAGCCTGCCTGCAGCTGGAGGCGGATCAGA
GGTGGGCCGTGACCGGCACGCCTATACAGAATAGCCTTGACGACGTGGCC
GCTCTGCTGGCCTTCCTACGGCACGAGCCTTGGAGCGACCGCGGCTGGTG
GAGGAGGGTCATCGCCGACCCCTACAAGGTGTAGTCTCGAGCCTGCCTGC
AGCTGGAGGCGGATCAGAGGTGGGCCGTGACCGGCACGCCTATACAGAAT
AGCCTTGACGACGTGGCCGCTCTGCTGGCCTTCCTACGGCACGAGCCTTG
GAGCGACCGCGGCTGGTGGAGGAGGGTCATCGCCGACCCCTACAAGGTGT
AG
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