mRNA_H-canaliculatus_F_contig1464.3565.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1464.3565.1
Unique NamemRNA_H-canaliculatus_F_contig1464.3565.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: D8LFU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU7_ECTSI)

HSP 1 Score: 307 bits (787), Expect = 2.660e-99
Identity = 197/295 (66.78%), Postives = 220/295 (74.58%), Query Frame = 1 
Query:  484 MIYLDLVASTAQLLPFLDAVVEG--------GRGEGAPKSSSGASFSISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATAGVSTGKGSEG--DKDQLPYRGEPSADSDAESST-GSSENGSGYESVDGSDEGRIPH---QRRPSSSSGGAGGRSAANRIFVFQDGTFQAR 1326
            MIYLDLVASTAQLLP+  A   G        G  E    +S GA F+  V RLVSR MQSFTGFT+I FA+E+VMLLAAFR KFFRH GY+LD+ VVS CLY E++GKGKGVRLLGALRVWRVARVMNTLLLSA+ AH  TRDTLRLAEK   D++ DRRRLQETLRRE EARKRVDKMLRGYKDEV ETLNEALKIAAMDIA A  S GK + G  ++D L  RG+P A SD  SS+ GSSE GS +ESV+G D+  IP    QRR  +SS        AN+IFVFQDGTFQAR
Sbjct:    1 MIYLDLVASTAQLLPYFQAAGAGPGSGAGDKGGAEEVAGTSGGAGFAAFVLRLVSRFMQSFTGFTIILFAIEMVMLLAAFREKFFRHAGYILDLFVVSLCLYQEISGKGKGVRLLGALRVWRVARVMNTLLLSADDAHNLTRDTLRLAEK---DLDIDRRRLQETLRREAEARKRVDKMLRGYKDEV-ETLNEALKIAAMDIAAAAASAGKDTVGGGEEDALHNRGQPPAGSDTGSSSLGSSEGGSIHESVNGLDQ-TIPQEEQQRRKGTSS-----VPTANKIFVFQDGTFQAR 285
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A7S2BNW9_9STRA (Voltage-gated hydrogen channel 1 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNW9_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.000e-36
Identity = 92/216 (42.59%), Postives = 132/216 (61.11%), Query Frame = 1 
Query:  427 VANLGRFVELFEVQVAVVAMIYLDLVASTAQLLPFLDAVVEGGRGEGAPKSSSGASFSISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATA 1074
            V     F E FEVQ+  + +I LD+  +   LL              AP SS        +A  V R++++FTGFTV +F LE+  L+ AFR  FF H+G +LD+ +V+ CL  E+ G+ + +RLLG LR WRV R++NTLL + E   ++T+D      +  ++   +  RL++ LRRE++++KRV+ MLR YKDEV ETLNEALKIAA+DIA A
Sbjct:   78 VVGAASFFESFEVQLVTLILIALDVALAVTSLLLTCG---------NAPASS-------GLALAVLRVIETFTGFTVFYFLLELGALMFAFRSAFFGHIGNILDLAIVATCLVWEVDGRSRAIRLLGVLRFWRVMRLVNTLLTTKETKLQETKDAWDTDLQILEETRVEIARLEDNLRRELDSKKRVETMLRSYKDEV-ETLNEALKIAALDIAQA 276
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A835YTE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE1_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.150e-35
Identity = 98/228 (42.98%), Postives = 130/228 (57.02%), Query Frame = 1 
Query:  649 FTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATAGVSTGKGSEGDKDQLPYRGEPSADSDAESSTGSSENGSGYESVDGSDEGRIPHQ--RRPSSSSGGAGGRSAANRIFVFQDGTFQAR 1326
            FT+ FFALE+++LLAAFR KF  HLGY+LD+ +V+ACL+ EL G  K +RLLG  R WRV R++NTL+  A+    +  D    A++   ++E DRRRL E LR E EARK  + ML GYK+E  ETL EAL IAAMDIA A  S                    D + + S GS+           SDE    H+  RR ++S     G    +RIFV +DG++ +R
Sbjct:    3 FTIFFFALELLVLLAAFRRKFLLHLGYMLDLAIVAACLWRELQGGSKELRLLGYCRGWRVVRLVNTLVEQAQERASRAADREAEAQRRAIEVEADRRRLAEALRLEREARKNTETMLLGYKEEA-ETLREALNIAAMDIAEAAAS--------------------DLEGDGSDGSA-----------SDESSPMHEDKRRGTASKADRLGDDRGDRIFVSEDGSWTSR 198
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A833SYR8_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYR8_PHYIN)

HSP 1 Score: 132 bits (331), Expect = 9.350e-31
Identity = 86/224 (38.39%), Postives = 132/224 (58.93%), Query Frame = 1 
Query:  430 ANLGRFVELFEVQVAVVAMIYLDLVASTAQLLPFLDAVVEGGRGEGAPKSSSGASFSISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATAGVSTGKGSE 1101
            + LG  +E  E QV ++ +I LD++++  ++       +     + A   +S    +  +AR+V+RL++SFTGFT+  F +E+ +LLAA R KFF H GYVLD+ VVS  +  EL  + K VRLLG LRVWRV R++  L+     AH+ TR  L   +     +   +   QE L+ E E+R  ++++LR YKDE+V TL EAL+IAA  +A A ++    +E
Sbjct:   76 SRLGAILETTEAQVIMILLIALDIISTAVEIHLHDQQQLHQLNSKRATADASTEVIAPRLARVVTRLVESFTGFTLFLFLIELAVLLAALRRKFFAHAGYVLDLAVVSVSVTVELYAQTKAVRLLGILRVWRVLRLVRHLVDQERAAHDATRQLLEQEQLKLLHVRMQKEAAQECLKCEYESRAGLEQLLRVYKDEIV-TLKEALQIAAQAVAEATMAESSDAE 298
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A2P4YCG1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YCG1_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.300e-30
Identity = 75/156 (48.08%), Postives = 105/156 (67.31%), Query Frame = 1 
Query:  607 VARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATA 1074
            + R+ +RL++SFTGFT+  F +E+V+LLAAFR KFF H GYV+D++VVS  L  EL  + K  RLLG LRVWRV R++  LL     AH+ TR  L   +     +   +    E+L+RE E+R+ ++++LRGYKDE+V TL EAL+IAA  +A A
Sbjct:   48 LVRVATRLVESFTGFTLFLFLIELVILLAAFRHKFFAHAGYVVDLVVVSLSLAVELYAQTKVARLLGILRVWRVLRLVGKLLDQERAAHDTTRLLLEQEQLKLLHVRMQKDAAHESLKREYESREGIEQLLRGYKDEIV-TLKEALQIAAQAVAEA 202
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A3F2RQZ6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQZ6_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.630e-30
Identity = 85/223 (38.12%), Postives = 131/223 (58.74%), Query Frame = 1 
Query:  436 LGRFVELFEVQVAVVAMIYLDLVASTAQL----LPFLDAVVEGGRGEGAPKSSSGASFSISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATAGVSTGK 1092
            LG  +E  E Q+  + +I LD+  +  ++       L  V++     G   ++S +     + R+ +RL++SF GFT+  F +E+ +LLAAFR KFF H GYVLD++VVS  L  EL  + K VRLLG LR+WRV R++  L+     AH+ T   L   +     +   +   QE+L+RE E+R+ ++++LR YKDE++ TL EAL+IAA  +A A V  G+
Sbjct:   99 LGAILETTEAQMVTILLIALDVCCTAVEMHLHNQQHLAVVLQQLNSVGKTGAASSSVAESLLMRIATRLVESFMGFTLFLFLIELAVLLAAFRQKFFAHAGYVLDLMVVSVSLTVELYAQTKAVRLLGVLRIWRVLRMVRRLIDRERRAHDATHLLLEQEQVRLIHVRMQKNASQESLKREYESREGLEQLLRSYKDEIM-TLKEALQIAAQAVAKATVDKGE 320
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A6U2PDJ5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2PDJ5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.420e-30
Identity = 91/246 (36.99%), Postives = 142/246 (57.72%), Query Frame = 1 
Query:  439 GRFVELFEVQVAVVAMIYLDLVASTAQLL---PFLDAVVEGGRGEGAPKSSSGASFSISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGK-FFRHLGYVLDMLVVSACLYAE----LAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATAGVSTGKGSEGDKDQLPYRGEPSADSD 1152
            G FVELFEVQ  +V +I+LDLVA+T+ +L    F D            ++++  ++ +S    +S+++ S + F +  F +E++ L   F  + F  H GY +D+ V+S C+  E     A   K   +LG LR+WR+AR++ T L SA  AH++TR +L    +    +  +  R ++++  E+EARKRV+KML+GYKDEV ETLNEAL+IAA D+  A  +  +G E + D      E + D D
Sbjct:   65 GEFVELFEVQSVIVLLIFLDLVATTSSMLIEITFKDV----------HENAASRAYIVSSVTTISKILNSASAFALAIFVVELLALCLTFGLRNFLSHPGYFIDLTVISLCILDEGAFSTAPISKFYHVLGFLRLWRLARLVRTALESAWNAHQETRASLDAKNEEAYRLSIELTRTKKSVELEIEARKRVEKMLQGYKDEV-ETLNEALEIAAYDVMLATAAADQGFENEVDTTTKEIETNLDGD 299
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BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A7S2W125_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W125_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.590e-30
Identity = 82/223 (36.77%), Postives = 128/223 (57.40%), Query Frame = 1 
Query:  406 GGRVMGTVANLGRFVELFEVQVAVVAMIYLDLVASTAQLLPFLDAVVEGGRGEGAPKSSSGASFSISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATA 1074
            G  V       G F E F++QV  +  I++D+ A+TA +                   S   S + S    V  ++QS  GFT+ +F LE+  L  AF+ +F  H G ++DM VV+  + AE+ G  + VR+LG LRVWR+ R++NT++ + +   +  R+  +  +   ++ +    RL++++RRE +A+KRV+ ML+ YKDEV ETLNEALKIAA+DIA A
Sbjct:   41 GAEVESRAQEAGNFFESFDIQVLTLCFIFVDVAAATALVA-----------------LSGEESLASSTTAAVLNVIQSLMGFTIFYFILELAALAWAFKTRFLTHAGILVDMGVVACAVLAEVQGTSRIVRVLGVLRVWRLMRLINTVMATKDKEIDSIREEWQADQARLEESQITISRLEDSIRREGDAKKRVEDMLKSYKDEV-ETLNEALKIAALDIAAA 245
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: A0A6A3LDP9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LDP9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.140e-29
Identity = 91/224 (40.62%), Postives = 130/224 (58.04%), Query Frame = 1 
Query:  412 RVMGTVANLGRFVELFEVQVAVVAMIYLDLVASTAQLLPFLDAVVEGGRGEGAPKSSSGASFSIS---VARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATA 1074
            R+      LG  +E  EVQ+ +V +I LD V  TA  +   D   +        + + GAS  +    + R+ +RL++SFTGFT+  F +E+ +LLAAFR +FF H GYVLDM+VV   L  EL  + K VRLLG LRVWRV R++  L+     AH+ TR  L   +     +   +    E+L+RE E+R  ++++LR YKDE+V TL EAL+IAA  +A A
Sbjct:   67 RLTSLEVRLGAVLETTEVQLTMVVLIALD-VGCTALEMHLHD---QQQLALALQQLNGGASLDVGGSVLVRIATRLVESFTGFTLFLFLIELAVLLAAFRRQFFAHAGYVLDMVVVGVSLAMELYAQSKAVRLLGILRVWRVLRLVRRLVDQERAAHDGTRLLLEQEQLKLLHVRMQKDAAHESLKREYESRSGLEQLLRSYKDEIV-TLKEALQIAAQAVAEA 285
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Match: D0NQR1_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NQR1_PHYIT)

HSP 1 Score: 125 bits (315), Expect = 1.910e-29
Identity = 75/165 (45.45%), Postives = 107/165 (64.85%), Query Frame = 1 
Query:  607 VARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVVSACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRLAEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKIAAMDIATAGVSTGKGSE 1101
            +AR+V+RL++SFTGFT+  F +E+ +LLAA R KFF H GYVLD+ VVS  +  EL  + K VRLLG LRVWRV R++  L+     AH+ TR  L   +     +   +   QE+L+ E E+R  ++++LR YKDE+V TL EAL+IAA  +A A ++    +E
Sbjct:   45 LARVVTRLVESFTGFTLFLFLIELAVLLAALRRKFFAHAGYVLDLAVVSVSVTVELYAQTKAVRLLGILRVWRVLRLVRHLVDQERAAHDATRQLLEQEQLKLLHVRMQKEAAQESLKCEYESRAGLEQLLRVYKDEIV-TLKEALQIAAQAVAEATMAESSDAE 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1464.3565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFU7_ECTSI2.660e-9966.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BNW9_9STRA3.000e-3642.59Voltage-gated hydrogen channel 1 n=2 Tax=Florencie... [more]
A0A835YTE1_9STRA4.150e-3542.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A833SYR8_PHYIN9.350e-3138.39Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A2P4YCG1_9STRA1.300e-3048.08Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A3F2RQZ6_9STRA2.630e-3038.12Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A6U2PDJ5_9STRA4.420e-3036.99Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2W125_9STRA7.590e-3036.77Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3LDP9_9STRA1.140e-2940.63Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
D0NQR1_PHYIT1.910e-2945.45Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1464contigH-canaliculatus_F_contig1464:4252..7303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.2
Seed ortholog evalue7.6e-82
Seed eggNOG ortholog2880.D8LFU7
EggNOG OGs2CNTP@1,2S41M@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVoltage-dependent channel, four helix bundle domain
Ec32 orthologEc-05_005470.1
Exons6
Model size1329
Cds size1329
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1464.3565.1prot_H-canaliculatus_F_contig1464.3565.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1464 4252..7303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.39157-CDS-H-canaliculatus_F_contig1464:4251..45601622929212.39157-CDS-H-canaliculatus_F_contig1464:4251..4560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 4252..4560 -
1696845719.9359386-CDS-H-canaliculatus_F_contig1464:4251..45601696845719.9359386-CDS-H-canaliculatus_F_contig1464:4251..4560Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 4252..4560 -
1622929212.4041734-CDS-H-canaliculatus_F_contig1464:5263..53741622929212.4041734-CDS-H-canaliculatus_F_contig1464:5263..5374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 5264..5374 -
1696845719.9509993-CDS-H-canaliculatus_F_contig1464:5263..53741696845719.9509993-CDS-H-canaliculatus_F_contig1464:5263..5374Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 5264..5374 -
1622929212.4199188-CDS-H-canaliculatus_F_contig1464:5615..57341622929212.4199188-CDS-H-canaliculatus_F_contig1464:5615..5734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 5616..5734 -
1696845719.96035-CDS-H-canaliculatus_F_contig1464:5615..57341696845719.96035-CDS-H-canaliculatus_F_contig1464:5615..5734Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 5616..5734 -
1622929212.4357142-CDS-H-canaliculatus_F_contig1464:5945..60991622929212.4357142-CDS-H-canaliculatus_F_contig1464:5945..6099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 5946..6099 -
1696845719.9731183-CDS-H-canaliculatus_F_contig1464:5945..60991696845719.9731183-CDS-H-canaliculatus_F_contig1464:5945..6099Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 5946..6099 -
1622929212.4535918-CDS-H-canaliculatus_F_contig1464:6343..66611622929212.4535918-CDS-H-canaliculatus_F_contig1464:6343..6661Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 6344..6661 -
1696845719.9818265-CDS-H-canaliculatus_F_contig1464:6343..66611696845719.9818265-CDS-H-canaliculatus_F_contig1464:6343..6661Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 6344..6661 -
1622929212.4694371-CDS-H-canaliculatus_F_contig1464:6985..73031622929212.4694371-CDS-H-canaliculatus_F_contig1464:6985..7303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 6986..7303 -
1696845719.9928064-CDS-H-canaliculatus_F_contig1464:6985..73031696845719.9928064-CDS-H-canaliculatus_F_contig1464:6985..7303Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1464 6986..7303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1464.3565.1

>prot_H-canaliculatus_F_contig1464.3565.1 ID=prot_H-canaliculatus_F_contig1464.3565.1|Name=mRNA_H-canaliculatus_F_contig1464.3565.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=443bp
MVSLTFDEFHAIRSRQRAAADAEAATAASAATPSSRTTPSDQNPKDKPPK
HRQPAKPSIAASPASTKHSGGVSISSPRRSTAWPSSLPPGASDDTKDDKI
APTSGSGFHKQPQQHQQLKKSNGAEKINCFNSAWGGGRVMGTVANLGRFV
ELFEVQVAVVAMIYLDLVASTAQLLPFLDAVVEGGRGEGAPKSSSGASFS
ISVARLVSRLMQSFTGFTVIFFALEVVMLLAAFRGKFFRHLGYVLDMLVV
SACLYAELAGKGKGVRLLGALRVWRVARVMNTLLLSAEGAHEQTRDTLRL
AEKSTQDIETDRRRLQETLRREVEARKRVDKMLRGYKDEVVETLNEALKI
AAMDIATAGVSTGKGSEGDKDQLPYRGEPSADSDAESSTGSSENGSGYES
VDGSDEGRIPHQRRPSSSSGGAGGRSAANRIFVFQDGTFQAR*
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mRNA from alignment at H-canaliculatus_F_contig1464:4252..7303-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1464.3565.1 ID=mRNA_H-canaliculatus_F_contig1464.3565.1|Name=mRNA_H-canaliculatus_F_contig1464.3565.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3052bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1464:4252..7303- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTATCCCTCACCTTCGATGAGTTCCATGCCATTCGAAGCCGGCAGCG
CGCAGCGGCAGACGCCGAGGCCGCAACAGCAGCGAGTGCAGCTACACCAT
CGAGCAGAACGACGCCAAGCGATCAGAACCCAAAGGACAAGCCGCCAAAA
CATCGACAGCCAGCGAAGCCGTCGATAGCCGCGAGCCCTGCAAGCACCAA
GCACAGCGGTGGCGTGTCCATATCCTCTCCCCGCCGCTCTACCGCATGGC
CTTCTTCTCTTCCTCCCGGCGCAAGCGATGATACTAAAGATGACAAGATT
GCTCCGACATCAGGGTCGGTGAGTGCAATCAATGAATCCCTAGACACAAA
TATCTACGTGTGACTGGGAGAAGGCGCAAGGTTAACGCCTACAAGTATGT
GGCCTGCATTTTATAAAACAAGTCAACAACACCGAAGGAATATCCAGGAA
CAAACCCAGGTTGACTGCGCAATCCTCATGTTCGTGATTATACCTGAGCT
CGGCAAGAGGATGCATCTTCCACAACCGCAGCAAATTGCACAACACACCG
TTTGGAAGTCGTGAGCAACGCAGTCTTTCGACACCATGGCAACTCAGAGG
CGACTGCAACACCTCTGCCCTGTCCATCATATTCTTTCAAAGGGCTTTCA
TAAGCAACCGCAGCAACATCAGCAGCTGAAGAAGAGCAATGGGGCAGAGA
AGATAAATTGCTTCAACTCAGCATGGGGCGGGGGGCGAGTAATGGGTACT
GTGGCGAATCTGGGACGCTTCGTGGAGCTGTTCGAGGTACAAGTAGCCGT
GGTAGCCATGATCTACCTCGACCTTGTAGCCAGCACGGCACAGCTGCTAC
CCTTCCTGGACGCTGTGGTGGAGGGGGGGCGGGGTGAGGGAGCGCCGAAG
AGCTCGAGCGGTGCTAGTTTCAGCATATCTGTGGCTCGACTCGTCTCACG
GCTAATGCAGGTACACCTTGCTTCGTGTTGTCAATTGTGGCCAACCTTAC
TCACCACGGTGTACCGACGATATTTGATGTCTGCCATAGTCCTATCAAGT
GACCTGCTTTCGCCAAACCGGTAAGGTACCGTGGTGGTGGAGTCGCGAAG
GACCTTGTCAGCTTTTCCTCTTTTCGATTTCGAAGTCAGCAACCAGCCCC
CCTCCTGCTGCCGTTTCTGGCGTACCCTCATGTTTCTCAAACTGAATACC
ACAGTCGTTCACAGGATTCACGGTAATATTTTTCGCGCTGGAGGTCGTCA
TGCTGCTGGCCGCTTTCCGCGGAAAGTTCTTCCGGCACTTGGGTTACGTT
CTCGACATGTTAGTGGTCTCGGCATGTCTTTACGCGGAGCTAGCTGGCAA
GGGCAAAGGTAAAACTACTCTTGAGGTGAATGATGAAGTACGAATGCTCG
GATCTGTTGTTTTGGCTACCAGCAAGCAACGGAAACCACCCGGTTGGTTG
TTCGTATAATGCCGGCCAATGGCTCGCAACCTGAGCCTTTTGTCTAGTGT
TTCCGGCCTTCACCGTACCGCGCTCGTCTTTGGCTGCATCCCACCTCCCC
GCCCGGCCGAACTGCTCAGGGGTGCGACTCCTTGGCGCTCTTCGTGTGTG
GCGAGTGGCAAGGGTGATGAACACTCTCCTGCTTTCAGCCGAAGGGGCTC
ACGAACAGACAAGAGACACGCTCCGTCTTGCAGAAAAGGTGTGACTGCTG
TGGTACGTCAACGACTTCGGTTGTGAATACCCTGTAGCTCTTAGCAAACA
CGTATCAAGTACAGATTACAAAGATGTTCCTAAATGGGAGAGGGACGCTG
TGACGTTAGCGTCTCCAGATTCAGAACTTGCCGATGCTTCGGCGCACCGA
CAACCCTAGTCGTGGTTCCTCGCCACACATGTTGATACGCACACCCCATC
CCGTGACTGGCATCGCTACCAATAAGCAGAGCACGCAGGACATCGAAACG
GATCGAAGGCGTTTGCAGGAAACCCTCAGACGGGAGGTGGAGGCCCGAAA
GAGAGTCGACAAGATGCTAAGGGGCTACAAGGATGAGGTAGTTTTAACTC
GCGGTGTATGGCAGAAGGACTAGCACACTCTTGAAGACCGCACCTCCCCA
GCTGTGACAGTTATACTGTATTCGTTTTGCCATAGTCGTAGGGAAGAAAT
ACAATACAAACGAGCACGGAGACCTGTAAGGAGCTCTCACACAACCTTCC
CGCCCCCTGGCGTAGGCGCTGTTCGCGACGAGTCACGGCCATTGTAATGT
GACCACATGGTTTTAGTTTCACATGACTGTGCTTTTAAAGGTGGGAACCC
GTGGCCGGAATCTCAAGTGCTTTCAAACACTGTACCTCCACCTCTCACGT
CTTCAGAAGACAATGCAATGGAAATAAATAAAAGATCCAGAAACCAAAGA
CGATGTCTGCCGAAGTTGACGAGAGCCATAACAAACTGGGGGCGAGGTCA
AATGTTGTTGTATGTCCCAGGGCTCAAGACAACAGATTCTACCCTCCTCA
GGCTAGGATCATCTTAGTTTGCGCCTTGCAATATACGTGATTCCAGGGCA
GACACTCCAAACAACACCCTTAACCCTTCTTTCTAACGCCTGGTTATAAA
AGAGCCGTCGTCTTCCATTTCAATTTGGTCGGCGTGCGATGTTGTACAAC
TGTCACAGCTCAAGCCTCAGATCGAAGACGTTCACCATAGGGAGTACCCC
CTTAGCGACGTCACACCCTTCTTGAATAATCGCCCGAATTAAGGTGGAAA
CCTTGAACGAGGCTCTCAAAATCGCTGCCATGGACATTGCCACGGCCGGT
GTGTCAACTGGAAAAGGCAGTGAGGGTGACAAGGACCAACTTCCATATCG
CGGCGAACCCTCGGCCGATTCAGACGCCGAGAGTAGCACGGGGAGCAGTG
AGAACGGGAGTGGTTACGAGTCTGTGGATGGTTCGGACGAAGGTAGGATC
CCTCACCAGCGGCGCCCTTCTTCTTCTTCTGGTGGCGCTGGTGGACGCTC
AGCAGCGAATCGAATATTTGTGTTCCAGGACGGGACATTCCAGGCTCGAT
GA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1464:4252..7303-

>mRNA_H-canaliculatus_F_contig1464.3565.1 ID=mRNA_H-canaliculatus_F_contig1464.3565.1|Name=mRNA_H-canaliculatus_F_contig1464.3565.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2658bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1464:4252..7303- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTATCCCTCACCTTCGATGAGTTCCATGCCATTCGAAGCCGGCAGCG
CGCAGCGGCAGACGCCGAGGCCGCAACAGCAGCGAGTGCAGCTACACCAT
CGAGCAGAACGACGCCAAGCGATCAGAACCCAAAGGACAAGCCGCCAAAA
CATCGACAGCCAGCGAAGCCGTCGATAGCCGCGAGCCCTGCAAGCACCAA
GCACAGCGGTGGCGTGTCCATATCCTCTCCCCGCCGCTCTACCGCATGGC
CTTCTTCTCTTCCTCCCGGCGCAAGCGATGATACTAAAGATGACAAGATT
GCTCCGACATCAGGGTCGATGGTATCCCTCACCTTCGATGAGTTCCATGC
CATTCGAAGCCGGCAGCGCGCAGCGGCAGACGCCGAGGCCGCAACAGCAG
CGAGTGCAGCTACACCATCGAGCAGAACGACGCCAAGCGATCAGAACCCA
AAGGACAAGCCGCCAAAACATCGACAGCCAGCGAAGCCGTCGATAGCCGC
GAGCCCTGCAAGCACCAAGCACAGCGGTGGCGTGTCCATATCCTCTCCCC
GCCGCTCTACCGCATGGCCTTCTTCTCTTCCTCCCGGCGCAAGCGATGAT
ACTAAAGATGACAAGATTGCTCCGACATCAGGGTCGGGCTTTCATAAGCA
ACCGCAGCAACATCAGCAGCTGAAGAAGAGCAATGGGGCAGAGAAGATAA
ATTGCTTCAACTCAGCATGGGGCGGGGGGCGAGTAATGGGTACTGTGGCG
AATCTGGGACGCTTCGTGGAGCTGTTCGAGGTACAAGTAGCCGTGGTAGC
CATGATCTACCTCGACCTTGTAGCCAGCACGGCACAGCTGCTACCCTTCC
TGGACGCTGTGGTGGAGGGGGGGCGGGGTGAGGGAGCGCCGAAGAGCTCG
AGCGGTGCTAGTTTCAGCATATCTGTGGCTCGACTCGTCTCACGGCTAAT
GCAGGGCTTTCATAAGCAACCGCAGCAACATCAGCAGCTGAAGAAGAGCA
ATGGGGCAGAGAAGATAAATTGCTTCAACTCAGCATGGGGCGGGGGGCGA
GTAATGGGTACTGTGGCGAATCTGGGACGCTTCGTGGAGCTGTTCGAGGT
ACAAGTAGCCGTGGTAGCCATGATCTACCTCGACCTTGTAGCCAGCACGG
CACAGCTGCTACCCTTCCTGGACGCTGTGGTGGAGGGGGGGCGGGGTGAG
GGAGCGCCGAAGAGCTCGAGCGGTGCTAGTTTCAGCATATCTGTGGCTCG
ACTCGTCTCACGGCTAATGCAGTCGTTCACAGGATTCACGGTAATATTTT
TCGCGCTGGAGGTCGTCATGCTGCTGGCCGCTTTCCGCGGAAAGTTCTTC
CGGCACTTGGGTTACGTTCTCGACATGTTAGTGGTCTCGGCATGTCTTTA
CGCGGAGCTAGCTGGCAAGGGCAAAGTCGTTCACAGGATTCACGGTAATA
TTTTTCGCGCTGGAGGTCGTCATGCTGCTGGCCGCTTTCCGCGGAAAGTT
CTTCCGGCACTTGGGTTACGTTCTCGACATGTTAGTGGTCTCGGCATGTC
TTTACGCGGAGCTAGCTGGCAAGGGCAAAGGGGTGCGACTCCTTGGCGCT
CTTCGTGTGTGGCGAGTGGCAAGGGTGATGAACACTCTCCTGCTTTCAGC
CGAAGGGGCTCACGAACAGACAAGAGACACGCTCCGTCTTGCAGAAAAGG
GGTGCGACTCCTTGGCGCTCTTCGTGTGTGGCGAGTGGCAAGGGTGATGA
ACACTCTCCTGCTTTCAGCCGAAGGGGCTCACGAACAGACAAGAGACACG
CTCCGTCTTGCAGAAAAGAGCACGCAGGACATCGAAACGGATCGAAGGCG
TTTGCAGGAAACCCTCAGACGGGAGGTGGAGGCCCGAAAGAGAGTCGACA
AGATGCTAAGGGGCTACAAGGATGAGGTAAGCACGCAGGACATCGAAACG
GATCGAAGGCGTTTGCAGGAAACCCTCAGACGGGAGGTGGAGGCCCGAAA
GAGAGTCGACAAGATGCTAAGGGGCTACAAGGATGAGGTAGTGGAAACCT
TGAACGAGGCTCTCAAAATCGCTGCCATGGACATTGCCACGGCCGGTGTG
TCAACTGGAAAAGGCAGTGAGGGTGACAAGGACCAACTTCCATATCGCGG
CGAACCCTCGGCCGATTCAGACGCCGAGAGTAGCACGGGGAGCAGTGAGA
ACGGGAGTGGTTACGAGTCTGTGGATGGTTCGGACGAAGGTAGGATCCCT
CACCAGCGGCGCCCTTCTTCTTCTTCTGGTGGCGCTGGTGGACGCTCAGC
AGCGAATCGAATATTTGTGTTCCAGGACGGGACATTCCAGGCTCGATGAG
TGGAAACCTTGAACGAGGCTCTCAAAATCGCTGCCATGGACATTGCCACG
GCCGGTGTGTCAACTGGAAAAGGCAGTGAGGGTGACAAGGACCAACTTCC
ATATCGCGGCGAACCCTCGGCCGATTCAGACGCCGAGAGTAGCACGGGGA
GCAGTGAGAACGGGAGTGGTTACGAGTCTGTGGATGGTTCGGACGAAGGT
AGGATCCCTCACCAGCGGCGCCCTTCTTCTTCTTCTGGTGGCGCTGGTGG
ACGCTCAGCAGCGAATCGAATATTTGTGTTCCAGGACGGGACATTCCAGG
CTCGATGA
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