mRNA_H-canaliculatus_F_contig1463.3563.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1463.3563.1
Unique NamemRNA_H-canaliculatus_F_contig1463.3563.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: D8LEY3_ECTSI (Serine/threonine-protein phosphatase 6 regulatory subunit, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY3_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.060e-39
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            LSKESS+R+MM++LAD PPEGA DNRVFKFPYMSCEIICCEVPEIL A+A DG+  G  CPL+KLFS+L+ EG+ID+HRAGYLEKV
Sbjct:   44 LSKESSVRDMMSYLADPPPEGAPDNRVFKFPYMSCEIICCEVPEILKAIASDGAGGGDDCPLRKLFSILDGEGDIDSHRAGYLEKV 129
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: A0A6H5LCR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCR6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.300e-35
Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAG 243
            LSKESS+R+MM++LAD PPEGA DNRVFKFPYMSCEIICCEVPEIL A+A DG   G  CPL+KLFS+L+ EG+ID+HRAG
Sbjct:   14 LSKESSVRDMMSYLADPPPEGAPDNRVFKFPYMSCEIICCEVPEILKAIAFDGVGGGDDCPLRKLFSILDGEGDIDSHRAG 94
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: W7TD98_9STRA (Sit4 phosphatase-associated family protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD98_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.400e-18
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVA--KDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            L++E+S+ EM+  L D PP+GA D RV KFPYM+CE ICCE   +L+A+   +DG        L+++FS+L++EG++D    GY EKV
Sbjct:   58 LAQEASLEEMVELLVDPPPDGADDKRVHKFPYMACEAICCENDHVLDALVSTRDGEM------LRRMFSLLDKEGDLDDRLTGYFEKV 139
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: A0A024G6J8_9STRA (Uncharacterized protein n=4 Tax=Albugo candida TaxID=65357 RepID=A0A024G6J8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.640e-15
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            LS+E S+REM+ +++ +P + +   R FK+PYMSCE+ICC+V  IL  +   G        ++ LFS L+  G +D   AGY EKV
Sbjct:   62 LSREESVREMIKYISTSPSDSSDVLRTFKYPYMSCEVICCDVESILTTIVTTGDGQ----LIESLFSFLDPPGALDTRLAGYFEKV 143
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: F0WEH4_9STRA (Serine/threonineprotein phosphatase 6 regulatory subunit putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WEH4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.050e-15
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            LS+E S+ EM+ +++  P +     R FK+PYMSCE+ICC+V  IL+A+ K G        ++ LFS+L+Q+  +D   AGY EKV
Sbjct:   62 LSREESVCEMIEYISTNPDDTCDVIRTFKYPYMSCEVICCDVDSILSAIIKTGDGQ----LIETLFSLLDQQEALDTRLAGYFEKV 143
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: A0A835YR29_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR29_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 6.930e-14
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQE-GEIDAHRAGYLEK 255
            L +  ++ E++++LAD  P  ASD R +K+PYM+CEI+CCEV  +L A+A+       P  L +L S+L+Q  G +D   AGYLE+
Sbjct:   64 LCRPETVTELLSYLADPIPADASDARRYKYPYMACEIVCCEVDRVLAAIAEQ------PSHLAQLLSMLDQPPGGLDHRHAGYLEE 143
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: K3WM88_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM88_GLOUD)

HSP 1 Score: 72.8 bits (177), Expect = 4.480e-13
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            LS+E S+ +M+ ++   P + + D R  K+PYMSCE+ICC++  I   +A  G+S+G    ++ LF  L Q G +D+  AGY EK+
Sbjct:   61 LSQEQSVLKMIEYVVQTPEDPSDDMRTLKYPYMSCEVICCDIMSITETLA--GASEGKI--VETLFEFLYQSGPLDSRLAGYFEKI 142
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: A0A1V9ZJL5_9STRA (Serine/threonine-protein phosphatase 6 regulatory subunit n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJL5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.550e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAV--AKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            LS E S+R+M+ ++   P EG SD +  K+P+MSCE++CC++  I   +  AKDG+        + LF +LE+   +D+  AGY EKV
Sbjct:   61 LSTEESVRKMVYYITRTPEEGDSDLKAIKYPFMSCEVLCCDIMCITETLSTAKDGAI------TEDLFKLLEKPSPLDSRLAGYFEKV 142
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: A0A7N0RDC2_KALFE (Uncharacterized protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RDC2_KALFE)

HSP 1 Score: 71.2 bits (173), Expect = 1.560e-12
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            L  E+ +++++ ++ + PPE A +NR FKFP++SCEI CCE+  IL  + +D         +  LFS LE +    A  AGY  KV
Sbjct:   49 LRDEAQVKQLLKYIVEEPPEDADNNRAFKFPFISCEIFCCEIDVILKTLVEDEKL------MDLLFSFLEPDRSQSAMLAGYFSKV 128
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BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Match: T0QUR6_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QUR6_SAPDV)

HSP 1 Score: 69.3 bits (168), Expect = 7.360e-12
Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:    1 LSKESSIREMMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGPCPLKKLFSVLEQEGEIDAHRAGYLEKV 258
            LS E S+R+M+ ++   P +G SD +  K+P+MSCE++CC++  I   ++   ++DG    ++ LF +L+Q   +D+  AGY EKV
Sbjct:   61 LSTEESVRKMVYYITRTPEDGDSDLKAIKYPFMSCEVLCCDIMCITETLST--AADGAI--VEDLFKLLQQPSPLDSRLAGYFEKV 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1463.3563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEY3_ECTSI2.060e-3976.74Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A6H5LCR6_9PHAE2.300e-3575.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TD98_9STRA2.400e-1846.59Sit4 phosphatase-associated family protein n=3 Tax... [more]
A0A024G6J8_9STRA1.640e-1541.86Uncharacterized protein n=4 Tax=Albugo candida Tax... [more]
F0WEH4_9STRA3.050e-1543.02Serine/threonineprotein phosphatase 6 regulatory s... [more]
A0A835YR29_9STRA6.930e-1443.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WM88_GLOUD4.480e-1339.53Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZJL5_9STRA1.550e-1239.77Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A7N0RDC2_KALFE1.560e-1238.37Uncharacterized protein n=1 Tax=Kalanchoe fedtsche... [more]
T0QUR6_SAPDV7.360e-1237.21Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1463contigH-canaliculatus_F_contig1463:25813..26605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1e-29
Seed eggNOG ortholog2880.D8LEY3
KEGG koko:K15501
GOsGO:0000226,GO:0000235,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005818,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0005881,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007275,GO:0008150,GO:0009790,GO:0009987,GO:0015630,GO:0016043,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0030029,GO:0030036,GO:0030588,GO:0030590,GO:0030865,GO:0030866,GO:0032501,GO:0032502,GO:0040001,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051293,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:0071944,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1902850,GO:1903047
EggNOG free text desc.protein phosphatase binding
EggNOG OGsKOG2073@1,KOG2073@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1463.3563.1prot_H-canaliculatus_F_contig1463.3563.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1463 25840..26605 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.2193246-UTR-H-canaliculatus_F_contig1463:25812..258391622929212.2193246-UTR-H-canaliculatus_F_contig1463:25812..25839Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1463 25813..25839 +
1696845719.8499172-UTR-H-canaliculatus_F_contig1463:25812..258391696845719.8499172-UTR-H-canaliculatus_F_contig1463:25812..25839Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1463 25813..25839 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929212.2353094-CDS-H-canaliculatus_F_contig1463:25839..258981622929212.2353094-CDS-H-canaliculatus_F_contig1463:25839..25898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 25840..25898 +
1696845719.860023-CDS-H-canaliculatus_F_contig1463:25839..258981696845719.860023-CDS-H-canaliculatus_F_contig1463:25839..25898Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 25840..25898 +
1622929212.2687974-CDS-H-canaliculatus_F_contig1463:26433..266051622929212.2687974-CDS-H-canaliculatus_F_contig1463:26433..26605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 26434..26605 +
1696845719.8703103-CDS-H-canaliculatus_F_contig1463:26433..266051696845719.8703103-CDS-H-canaliculatus_F_contig1463:26433..26605Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1463 26434..26605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1463.3563.1

>prot_H-canaliculatus_F_contig1463.3563.1 ID=prot_H-canaliculatus_F_contig1463.3563.1|Name=mRNA_H-canaliculatus_F_contig1463.3563.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=77bp
MMAFLADAPPEGASDNRVFKFPYMSCEIICCEVPEILNAVAKDGSSDGGP
CPLKKLFSVLEQEGEIDAHRAGYLEKV
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mRNA from alignment at H-canaliculatus_F_contig1463:25813..26605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1463.3563.1 ID=mRNA_H-canaliculatus_F_contig1463.3563.1|Name=mRNA_H-canaliculatus_F_contig1463.3563.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=793bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:25813..26605+ (Hapterophycus canaliculatus Oshoro5f female)
CTGAGCAAGGAGTCGAGCATACGAGAAATGATGGCTTTCCTCGCGGATGC
TCCTCCGGAGGGCGCATCGGACAATCGCGTGTTCAAGTGAGTGATATCCC
CCAAGCGGAACGGAGGGAAAATGACAAGATGACACGACGCGCGAAACCTC
CAGCTGCGTGACAGCTTGGCCTTCTCGCCGTTCTACGCAAAGCCGAGACG
AGGATGAGCACGTTAGGGTCCCTGTCCTCGCCAGGGGAGAGACGGACGGA
CCAATTAGGAAAGGGGGACAATATCCTCTCGTCGTATTTGGTGCCTGTGA
TATGATAGCTCAATTAGGCAAAATTTCAGAGTTTCTACCTCCACACATCC
CCCTCTCTCCCGCGCGAATGGGAGGAGGAGGACAAAAGATGGCTGTCCCC
CGGGGTGTTACGCCTTATCAGTGGAAAACCGCCGCGTTGTCGATCGGGCA
TGCACATCACCTCGGATAAAACAGCGCCGTTCCTCCACCGCTGGAAATAC
ACACACACGCGACACGTGCGCGAACACGCACGTGCACAGCGGAGAGGGAC
GGATGGTTTTGCACGCGGTCGCGGTCGCGCTGGCGTTTCGCTGACCCCAC
CGCATTTTTCCGGGCCGGCAGGTTCCCGTACATGTCGTGCGAGATCATCT
GCTGCGAGGTGCCGGAGATCCTCAACGCCGTCGCTAAGGACGGCAGCAGC
GACGGGGGTCCGTGTCCCCTCAAAAAGCTATTTTCTGTTTTGGAGCAGGA
GGGGGAGATCGACGCCCACCGCGCAGGGTACCTTGAAAAGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1463:25813..26605+

>mRNA_H-canaliculatus_F_contig1463.3563.1 ID=mRNA_H-canaliculatus_F_contig1463.3563.1|Name=mRNA_H-canaliculatus_F_contig1463.3563.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:25813..26605+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGCTTTCCTCGCGGATGCTCCTCCGGAGGGCGCATCGGACAATCG
CGTGTTCAAATGATGGCTTTCCTCGCGGATGCTCCTCCGGAGGGCGCATC
GGACAATCGCGTGTTCAAGTTCCCGTACATGTCGTGCGAGATCATCTGCT
GCGAGGTGCCGGAGATCCTCAACGCCGTCGCTAAGGACGGCAGCAGCGAC
GGGGGTCCGTGTCCCCTCAAAAAGCTATTTTCTGTTTTGGAGCAGGAGGG
GGAGATCGACGCCCACCGCGCAGGGTACCTTGAAAAGGTCGTTCCCGTAC
ATGTCGTGCGAGATCATCTGCTGCGAGGTGCCGGAGATCCTCAACGCCGT
CGCTAAGGACGGCAGCAGCGACGGGGGTCCGTGTCCCCTCAAAAAGCTAT
TTTCTGTTTTGGAGCAGGAGGGGGAGATCGACGCCCACCGCGCAGGGTAC
CTTGAAAAGGTC
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