|
|
Homology
BLAST of mRNA_H-canaliculatus_F_contig1463.3561.1 vs. uniprot
Match: D8LEY6_ECTSI (J domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY6_ECTSI) HSP 1 Score: 296 bits (757), Expect = 3.040e-93 Identity = 212/321 (66.04%), Postives = 230/321 (71.65%), Query Frame = 1
Query: 670 GLRKPRDADGTPRGSENPDSRDENEGASRSSGGTKANVSS--VPASKRGPPEDDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPRAPTSSSFSSQEPAPELRLTSSQQPRASFDGIDELLEAERPAAAGAAAADADFFKFRGKEELASVERRQEVEXXXXXXXXXXXXXXXXXXXSDGGSAVKVELATQLGLPATSTYDELRTAYRVEIKRCHPDLAGNNEFRVKFLERKFLKLQGCWDEFSAEQAAGAATVRTAKAEAGGRDAGGSSQAARXXXXXXXXXXXXXXXXXXXXXXEAAHRSRRPVMDPGRKVMDPGNTSSC 1626
GLRKPR DG+ E+PD E G + + S +PASKR PPE+DDIWSKHSVFEFKSLNDPDTNACGYKGLSGQP + + SSQ PAPE RLTSSQQP A FDG+ +L EAERP AA DADFF FR K+ LASV+RR+EVE XXXXXXXXXXXX GSAVKVELATQLGLPA+STYDELRTAYRVEIKRCHPDLAG+NEFRVKFLERKF KLQGCWD F+AE+ A + XXXXXXXXXXXXX XXXXXX A RS RPVMDP RKVMDPGNTSSC
Sbjct: 2 GLRKPRGPDGSRSSGEDPDP----EXXXXXGGSMRERMMSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPSSSRRRTRSSQAPAPERRLTSSQQPAAFFDGVGDLKEAERPTGTDAAF-DADFFAFREKDSLASVKRRREVERXXXXXXXXXXXXD--------GSAVKVELATQLGLPASSTYDELRTAYRVEIKRCHPDLAGDNEFRVKFLERKFQKLQGCWDMFNAERTASSTATXXXXXX---------XXXXXXXXXXXXXXXXXXDWEXXXXXXXXAGRSGRPVMDPDRKVMDPGNTSSC 300
BLAST of mRNA_H-canaliculatus_F_contig1463.3561.1 vs. uniprot
Match: A0A6H5KWT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT2_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.260e-57 Identity = 163/290 (56.21%), Postives = 183/290 (63.10%), Query Frame = 1
Query: 418 LARDYGHGTGGVYRSRPRTALYGIQRDLFSPVQSKPQLAARSWSSSSSSSPSCDD----LCLSNRLASAGDDFPRSSCRRRRR-STRLAGLRKPRDADGTPRGSENPDSRDE-NEGASRSSGGTKANVS-SVPASKRGPPEDDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPRAPTSSSFSSQEPAPELRLTSSQQPRASFDGIDELLEAERPAAAGAAAADADFFKFRGKEELASVERRQEVEXXXXXXXXXXXXXXXXXXXSDGGSAVKVELATQLGLPATSTYDE 1266
LA H RS TAL+ + + +P SKP + WSSS CL+N +GD R RRRR STRL GLRKPR DG+ ENPD +E NEG S + VS ++PASKR PPE+DDIWSKHSVFEFKSLNDPDTNACGYKGLSGQP + + SSQ PAP RLTSSQQP A FDG+ +L EAERP A DADFF FR K+ LASV+RR XXXXXXXXXXXXXX GSAVKVELATQLGLPA+STYDE
Sbjct: 18 LAPPSHHDNACARRSLRPTALHYARHEWSAPTLSKPLPTSPRWSSSXXXXXXXGSKIVHACLAN---GSGDGSTRLGYGRRRRDSTRLMGLRKPRGPDGSRSSGENPDPEEEDNEGGSM----RERMVSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAPARRLTSSQQPGAFFDGVADLKEAERPTETDATF-DADFFAFREKDLLASVKRRX--------XXXXXXXXXXXXXXXXKGSAVKVELATQLGLPASSTYDE 291
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | DnaJ domain |
| Ec32 ortholog | Ec-21_006040.1 |
| Exons | 3 |
| Model size | 1629 |
| Cds size | 1443 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929212.0318618-CDS-H-canaliculatus_F_contig1463:11364..11727 | 1622929212.0318618-CDS-H-canaliculatus_F_contig1463:11364..11727 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1463 11365..11727 - |
| 1696845719.7658155-CDS-H-canaliculatus_F_contig1463:11364..11727 | 1696845719.7658155-CDS-H-canaliculatus_F_contig1463:11364..11727 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1463 11365..11727 - |
| 1622929212.0466044-CDS-H-canaliculatus_F_contig1463:12624..13027 | 1622929212.0466044-CDS-H-canaliculatus_F_contig1463:12624..13027 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1463 12625..13027 - |
| 1696845719.777447-CDS-H-canaliculatus_F_contig1463:12624..13027 | 1696845719.777447-CDS-H-canaliculatus_F_contig1463:12624..13027 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1463 12625..13027 - |
| 1622929212.0674129-CDS-H-canaliculatus_F_contig1463:13624..14301 | 1622929212.0674129-CDS-H-canaliculatus_F_contig1463:13624..14301 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1463 13625..14301 - |
| 1696845719.7937064-CDS-H-canaliculatus_F_contig1463:13624..14301 | 1696845719.7937064-CDS-H-canaliculatus_F_contig1463:13624..14301 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1463 13625..14301 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929212.0838974-UTR-H-canaliculatus_F_contig1463:14301..14487 | 1622929212.0838974-UTR-H-canaliculatus_F_contig1463:14301..14487 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1463 14302..14487 - |
| 1696845719.8044198-UTR-H-canaliculatus_F_contig1463:14301..14487 | 1696845719.8044198-UTR-H-canaliculatus_F_contig1463:14301..14487 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1463 14302..14487 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1463.3561.1 >prot_H-canaliculatus_F_contig1463.3561.1 ID=prot_H-canaliculatus_F_contig1463.3561.1|Name=mRNA_H-canaliculatus_F_contig1463.3561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=481bp
MASAAALALPSCCTSASSMATAFVSAPAVAAAAALSDRIRMSPSSLPVGL ALLSPCSSGISRSSNRMDGGFPPPTQWLARDYGHGTGGVYRSRPRTALYG IQRDLFSPVQSKPQLAARSWSSSSSSSPSCDDLCLSNRLASAGDDFPRSS CRRRRRSTRLAGLRKPRDADGTPRGSENPDSRDENEGASRSSGGTKANVS SVPASKRGPPEDDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPRAPTSS SFSSQEPAPELRLTSSQQPRASFDGIDELLEAERPAAAGAAAADADFFKF RGKEELASVERRQEVERRRRGPGGGGGRRRGAVGGSDGGSAVKVELATQL GLPATSTYDELRTAYRVEIKRCHPDLAGNNEFRVKFLERKFLKLQGCWDE FSAEQAAGAATVRTAKAEAGGRDAGGSSQAARARARARAQEEARQQQAAA VAAAEAAHRSRRPVMDPGRKVMDPGNTSSC* back to topmRNA from alignment at H-canaliculatus_F_contig1463:11365..14487- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1463.3561.1 ID=mRNA_H-canaliculatus_F_contig1463.3561.1|Name=mRNA_H-canaliculatus_F_contig1463.3561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3123bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:11365..14487- (Hapterophycus canaliculatus Oshoro5f female) CTCGTCTGACGTGACTAAACAGGTCGACCAAAGGTGCCGTGACTCACAAA
CGCTAGGACCCATACTGCAAACGCGCAGGTAGCAAATCATTCCTTTGCAT
GCGGAGCAAGCAAGATCATTTGCTCGTTGGCGGTACGAGGGTCTGAATCC
TTTTACGCGGAGACTGCCACCGAGGTTCTTTTTGAGATGGCGTCAGCGGC
AGCTCTGGCGCTCCCGTCATGTTGCACCAGCGCCTCCAGCATGGCGACAG
CATTCGTGAGCGCCCCAGCAGTAGCTGCAGCAGCAGCTCTGTCGGACAGG
ATACGGATGTCGCCGTCAAGCTTACCCGTGGGGCTGGCGCTGCTGTCTCC
CTGCAGCAGCGGCATTTCTAGGAGCTCGAACAGGATGGATGGAGGGTTTC
CTCCGCCAACTCAATGGTTGGCCCGGGACTACGGACACGGTACCGGCGGT
GTCTACCGCTCGCGCCCACGGACAGCACTGTACGGCATCCAACGAGATTT
GTTTTCCCCGGTGCAATCCAAACCGCAACTGGCAGCCCGAAGCTGGAGCA
GCAGCAGTAGCAGCAGCCCCAGCTGCGACGACTTGTGTTTGTCGAACCGG
CTCGCCAGCGCCGGCGACGACTTCCCGCGAAGCTCGTGCCGCCGGCGGCG
AAGGTCCACGCGCTTGGCGGGCCTCCGCAAACCACGTGATGCTGATGGAA
CTCCCAGAGGCAGCGAGAATCCAGACTCGAGGGACGAAAATGAGGGCGCG
TCGAGGAGCTCCGGTGGGACAAAGGCGAACGTCAGCTCCGTGCCGGCGTC
GAAGCGAGGACCTCCCGAGGACGACGACATCTGGAGCAAGCACTCGGTCT
TCGAGTTCAAGAGGTGTGTGGGATGATGTCTTGGATGCTGGTCGGCGTTT
TTTGGTAGTTGCTGCTTACGGCTCTTTGTGAAATGCACCCCTTCGCCTTT
CACCAACAGCGACGGGACGATCTCTCGGGTGGTAGTGCTGGTGCCAGTGC
TGGTTTTGGAAAGGGGGCGGGAACGGGGGGGGTCGTGGTTGTCGTTCTGG
CAATCTGGCTCGTTTACCTCCGGCAGGCATTGCAAGGTATTCCTCACCTC
GGTCGAACACGCCGTTGGTTTCCAAGTAAAAGGAGAAATGATCATGTGGC
GCACGTTGGTATTACGGTGGCCAGCTACGTGTGCCGTGGTCGAACATTTA
TTTCGCAAATGACCGGTCAGGCGCTCGGCGAGTGAAGACGCAGACAGCAG
TCGCCCCACGGCTGTCTCCCGGAATCGGCAGTACACACCCACGCGATTCT
GTCGTGACTGCTGATTCCTCCCTGACGTGAGCCCCACCAGAACGCCGAAA
GTGCGTCCAACGTTGCTTTCATACGAAAGCACGCGCTCGTTGTGCCCCCT
CCAGCTCCTGACCTACGTTCCGACGCACATCTCCAATCAACCGTTTTACC
GCTCCTGCAGCCTGAACGACCCGGACACAAACGCTTGCGGCTATAAGGGC
CTCAGCGGCCAGCCGCGGGCCCCCACCTCCTCGTCCTTTTCCTCGCAAGA
ACCGGCCCCGGAACTGCGGCTTACCTCCAGCCAACAACCGCGTGCCTCCT
TCGACGGTATCGACGAGCTGCTGGAAGCGGAGCGACCGGCGGCAGCGGGA
GCCGCAGCGGCCGACGCGGATTTCTTCAAGTTTCGGGGGAAGGAAGAGCT
CGCGAGCGTCGAGCGCCGGCAGGAGGTTGAGCGGCGGCGGCGCGGGCCTG
GCGGCGGAGGGGGCCGCAGAAGGGGTGCCGTTGGTGGCAGCGATGGCGGA
AGCGCGGTGAAGGTCGAGCTGGCGACGCAGCTGGGCCTGCCCGCCACTTC
AACATACGACGAGGTCAGGACCGAACACGCGTCGTCGCAGCCGGTTTGTT
GTAATGGCATCGTAGGGGTTCCTACCTGTCCATAGCCAGGCGCGTTTCGC
TCTCCCAGCGTGCGATGGCCTACAGAGTGGTTGGCCGTCGTTTTGCCCGC
GTAGTGATCTCATCGTTGCCGTTGTCCAGGCGCGAACTTCCAGAACTGGC
GTCGATGAAGATGAGTCTGATGTTTGGAAGGGCGGCAACCCGCCGCTACT
TTCGCTGCTGCGCGTGCGAGAAGTTCCTCGTGAACAGGGTGAAGAGGTGC
CCGAAGATCGTGGCCGTTCAAGATATTTCTCTTCGCGATACACCACTTAT
TTTCTGGTCTAGTCCGCCTTCCTGACGACGCCCGGCGAACTGCTGCTCAC
CGTCTGTACCTTCTTGATGTGTGTACGATCTCACGGGCGTGGCGCACAAA
ATTTCCAGGAACATGACCCCATGCCTCGTTTTGCCAGTCACCGCTTGTTG
CACACCAACCCTAGACGTGACAATAACGACTCACCTTGCGTTCATCAAGC
TGCACACGCTTTTGAGACTTGCCATCCACACGCACACCGCTCACCAATCC
ACACGCTCACAAAATACGTGCATGCGGACGCCTCAGCGCATCGAACACGC
ACGCACACACGAACACACGATGACCGCATGCAGACCTCACGCGCTGATGT
CGACCCCCCCCCCCCAGCTACATTTTCCAGAGTCAGGCCTCTGCGAAACG
ATATGACAAGAACTTAGATAGGGCACGCCCATAGGAGACGCCTCTATCGG
GAGTAGGAATGGTGCTCCGGTTCGAAAGGCGTGCGTGGTCACTGATCAGT
TAACTTCTGTCAACCAACACGCGAGTAACCCCCTTACCACCCCCCCCCTG
CCCCCTACAGCTTCGCACGGCCTACCGCGTGGAAATCAAGCGGTGCCACC
CCGACCTCGCCGGCAACAATGAGTTCCGGGTCAAGTTCCTCGAGCGAAAG
TTCCTGAAGCTCCAGGGGTGCTGGGACGAGTTCAGCGCGGAACAGGCAGC
AGGAGCGGCGACTGTCCGGACGGCCAAGGCGGAAGCGGGGGGGCGGGATG
CCGGCGGTAGCAGCCAGGCAGCGCGGGCCCGGGCCCGGGCGCGGGCGCAG
GAGGAGGCCCGCCAGCAGCAGGCGGCGGCGGTGGCGGCGGCGGAGGCCGC
TCACCGCAGCAGGCGGCCCGTGATGGACCCGGGCAGGAAAGTGATGGACC
CCGGGAACACGAGCTCCTGCTAA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1463:11365..14487- >mRNA_H-canaliculatus_F_contig1463.3561.1 ID=mRNA_H-canaliculatus_F_contig1463.3561.1|Name=mRNA_H-canaliculatus_F_contig1463.3561.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2886bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1463:11365..14487- (Hapterophycus canaliculatus Oshoro5f female) ATGGCGTCAGCGGCAGCTCTGGCGCTCCCGTCATGTTGCACCAGCGCCTC CAGCATGGCGACAGCATTCGTGAGCGCCCCAGCAGTAGCTGCAGCAGCAG CTCTGTCGGACAGGATACGGATGTCGCCGTCAAGCTTACCCGTGGGGCTG GCGCTGCTGTCTCCCTGCAGCAGCGGCATTTCTAGGAGCTCGAACAGGAT GGATGGAGGGTTTCCTCCGCCAACTCAATGGTTGGCCCGGGACTACGGAC ACGGTACCGGCGGTGTCTACCGCTCGCGCCCACGGACAGCACTGTACGGC ATCCAACGAGATTTGTTTTCCCCGGTGCAATCCAAACCGCAACTGGCAGC CCGAAGCTGGAGCAGCAGCAGTAGCAGCAGCCCCAGCTGCGACGACTTGT GTTTGTCGAACCGGCTCGCCAGCGCCGGCGACGACTTCCCGCGAAGCTCG TGCCGCCGGCGGCGAAGGTCCACGCGCTTGGCGGGCCTCCGCAAACCACG TGATGCTGATGGAACTCCCAGAGGCAGCGAGAATCCAGACTCGAGGGACG AAAATGAGGGCGCGTCGAGGAGCTCCGGTGGGACAAAGGCGAACGTCAGC TCCGTGCCGGCGTCGAAGCGAGGACCTCCCGAGGACGACGACATCTGGAG CAAGCACTCGGTCTTCGAGTTCAAGAGATGGCGTCAGCGGCAGCTCTGGC GCTCCCGTCATGTTGCACCAGCGCCTCCAGCATGGCGACAGCATTCGTGA GCGCCCCAGCAGTAGCTGCAGCAGCAGCTCTGTCGGACAGGATACGGATG TCGCCGTCAAGCTTACCCGTGGGGCTGGCGCTGCTGTCTCCCTGCAGCAG CGGCATTTCTAGGAGCTCGAACAGGATGGATGGAGGGTTTCCTCCGCCAA CTCAATGGTTGGCCCGGGACTACGGACACGGTACCGGCGGTGTCTACCGC TCGCGCCCACGGACAGCACTGTACGGCATCCAACGAGATTTGTTTTCCCC GGTGCAATCCAAACCGCAACTGGCAGCCCGAAGCTGGAGCAGCAGCAGTA GCAGCAGCCCCAGCTGCGACGACTTGTGTTTGTCGAACCGGCTCGCCAGC GCCGGCGACGACTTCCCGCGAAGCTCGTGCCGCCGGCGGCGAAGGTCCAC GCGCTTGGCGGGCCTCCGCAAACCACGTGATGCTGATGGAACTCCCAGAG GCAGCGAGAATCCAGACTCGAGGGACGAAAATGAGGGCGCGTCGAGGAGC TCCGGTGGGACAAAGGCGAACGTCAGCTCCGTGCCGGCGTCGAAGCGAGG ACCTCCCGAGGACGACGACATCTGGAGCAAGCACTCGGTCTTCGAGTTCA AGAGCCTGAACGACCCGGACACAAACGCTTGCGGCTATAAGGGCCTCAGC GGCCAGCCGCGGGCCCCCACCTCCTCGTCCTTTTCCTCGCAAGAACCGGC CCCGGAACTGCGGCTTACCTCCAGCCAACAACCGCGTGCCTCCTTCGACG GTATCGACGAGCTGCTGGAAGCGGAGCGACCGGCGGCAGCGGGAGCCGCA GCGGCCGACGCGGATTTCTTCAAGTTTCGGGGGAAGGAAGAGCTCGCGAG CGTCGAGCGCCGGCAGGAGGTTGAGCGGCGGCGGCGCGGGCCTGGCGGCG GAGGGGGCCGCAGAAGGGGTGCCGTTGGTGGCAGCGATGGCGGAAGCGCG GTGAAGGTCGAGCTGGCGACGCAGCTGGGCCTGCCCGCCACTTCAACATA CGACGAGCCTGAACGACCCGGACACAAACGCTTGCGGCTATAAGGGCCTC AGCGGCCAGCCGCGGGCCCCCACCTCCTCGTCCTTTTCCTCGCAAGAACC GGCCCCGGAACTGCGGCTTACCTCCAGCCAACAACCGCGTGCCTCCTTCG ACGGTATCGACGAGCTGCTGGAAGCGGAGCGACCGGCGGCAGCGGGAGCC GCAGCGGCCGACGCGGATTTCTTCAAGTTTCGGGGGAAGGAAGAGCTCGC GAGCGTCGAGCGCCGGCAGGAGGTTGAGCGGCGGCGGCGCGGGCCTGGCG GCGGAGGGGGCCGCAGAAGGGGTGCCGTTGGTGGCAGCGATGGCGGAAGC GCGGTGAAGGTCGAGCTGGCGACGCAGCTGGGCCTGCCCGCCACTTCAAC ATACGACGAGCTTCGCACGGCCTACCGCGTGGAAATCAAGCGGTGCCACC CCGACCTCGCCGGCAACAATGAGTTCCGGGTCAAGTTCCTCGAGCGAAAG TTCCTGAAGCTCCAGGGGTGCTGGGACGAGTTCAGCGCGGAACAGGCAGC AGGAGCGGCGACTGTCCGGACGGCCAAGGCGGAAGCGGGGGGGCGGGATG CCGGCGGTAGCAGCCAGGCAGCGCGGGCCCGGGCCCGGGCGCGGGCGCAG GAGGAGGCCCGCCAGCAGCAGGCGGCGGCGGTGGCGGCGGCGGAGGCCGC TCACCGCAGCAGGCGGCCCGTGATGGACCCGGGCAGGAAAGTGATGGACC CCGGGAACACGAGCTCCTGCTAACTTCGCACGGCCTACCGCGTGGAAATC AAGCGGTGCCACCCCGACCTCGCCGGCAACAATGAGTTCCGGGTCAAGTT CCTCGAGCGAAAGTTCCTGAAGCTCCAGGGGTGCTGGGACGAGTTCAGCG CGGAACAGGCAGCAGGAGCGGCGACTGTCCGGACGGCCAAGGCGGAAGCG GGGGGGCGGGATGCCGGCGGTAGCAGCCAGGCAGCGCGGGCCCGGGCCCG GGCGCGGGCGCAGGAGGAGGCCCGCCAGCAGCAGGCGGCGGCGGTGGCGG CGGCGGAGGCCGCTCACCGCAGCAGGCGGCCCGTGATGGACCCGGGCAGG AAAGTGATGGACCCCGGGAACACGAGCTCCTGCTAA back to top
|