mRNA_H-canaliculatus_F_contig14624.3557.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14624.3557.1
Unique NamemRNA_H-canaliculatus_F_contig14624.3557.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: D8LEK3_ECTSI (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 7.400e-58
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPKKLQEVFG LRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMP+TIIGAGGTAPNQSLGAEHSQ
Sbjct:  504 QAGSSYDIPKKLQEVFGSLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPMTIIGAGGTAPNQSLGAEHSQ 603
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A0A7S1D9A9_CYCTE (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9A9_CYCTE)

HSP 1 Score: 184 bits (468), Expect = 5.460e-56
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPK  Q+ +G +RAADEIIDEGH +GKALGE MNGYRPIVELMNTNFGIYGMAE+SSAGNTYATTGGQFDMPLTIIGAGGTAPNQ+LGAEHSQ
Sbjct:   21 QAGSSYDIPKLTQQTYGQIRAADEIIDEGHFVGKALGEAMNGYRPIVELMNTNFGIYGMAEISSAGNTYATTGGQFDMPLTIIGAGGTAPNQALGAEHSQ 120
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: B8C5P9_THAPS (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5P9_THAPS)

HSP 1 Score: 184 bits (466), Expect = 9.290e-56
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPK  Q+ +G +RAADEIIDEGH IGKALGEGMNGYRPIVELMNTNFGI+GMAELSSAGNT+ATTGGQFDMP+TI+GAGGTAPNQ+LGAEHSQ
Sbjct:   15 QAGSSYDIPKLTQQTYGQIRAADEIIDEGHFIGKALGEGMNGYRPIVELMNTNFGIFGMAELSSAGNTFATTGGQFDMPMTIVGAGGTAPNQALGAEHSQ 114
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A0A7S2KDP0_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDP0_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.180e-55
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPK  Q+ +G +RAADEIIDEGH IGKALGEGMNGYRPIVELMNTNFGIYGMAE+SSAGNT+ATTGGQFDMP+TIIGAGGTAPNQSLGAEHSQ
Sbjct:  133 QAGSSYDIPKLTQQTYGQIRAADEIIDEGHFIGKALGEGMNGYRPIVELMNTNFGIYGMAEISSAGNTFATTGGQFDMPMTIIGAGGTAPNQSLGAEHSQ 232
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: F0YJF4_AURAN (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJF4_AURAN)

HSP 1 Score: 183 bits (464), Expect = 3.520e-55
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPK  Q+ FG LRAADEIIDEGH +GKALGEGMNGYRPIVELMN NFGIYGMAELSSAGNTYATTGGQF MP+T++GAGGTAPNQ+LGAEHSQ
Sbjct:   39 QAGSSYDIPKLTQQTFGALRAADEIIDEGHFLGKALGEGMNGYRPIVELMNANFGIYGMAELSSAGNTYATTGGQFKMPMTVVGAGGTAPNQALGAEHSQ 138
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A0A7S1USZ6_9STRA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1USZ6_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.600e-54
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPK  Q+ +G +RAADEIIDEGH IGKALGE MNGYRP+VELMNTNFGIYGMAELSSAGNTYATTGGQFDMP+TIIGAGGTAPNQ+LGAEHSQ
Sbjct:  162 QAGSSYDIPKLTQQTYGQIRAADEIIDEGHFIGKALGEAMNGYRPVVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPMTIIGAGGTAPNQALGAEHSQ 261
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A0A7S4HES2_9EUKA (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HES2_9EUKA)

HSP 1 Score: 182 bits (463), Expect = 9.030e-54
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSY+IPK  Q+ FG LRAADEIIDEGH IGKALGEGMNGYRPIVELMNTNFGIYG+AE+SSAGNTYATTGGQF+MP+TI+GAGGTAPNQ+LGAEHSQ
Sbjct:  163 QAGSSYNIPKLTQQTFGTLRAADEIIDEGHFIGKALGEGMNGYRPIVELMNTNFGIYGIAEMSSAGNTYATTGGQFEMPMTILGAGGTAPNQALGAEHSQ 262
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A0A7R9UYB8_DIALT (Pyruvate dehydrogenase E1 component subunit beta (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UYB8_DIALT)

HSP 1 Score: 180 bits (456), Expect = 1.030e-53
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIP   Q+ FG LRAADEIIDEGH +GKALGEG+NGYRPIVELMN+NFGIYGMAELSSAGNTYATTGGQF MP+T+IGAGGTAPNQ+LGAEHSQ
Sbjct:  240 QAGSSYDIPAFTQQTFGKLRAADEIIDEGHFMGKALGEGLNGYRPIVELMNSNFGIYGMAELSSAGNTYATTGGQFQMPMTVIGAGGTAPNQALGAEHSQ 339
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A0A7S2M045_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M045_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.290e-53
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSYDIPK  Q+ +G  RAADEIIDEGH IGKALGEGMNGYRPIVELMNTNFGI+GMAE+SSAGNTYATTGGQFDMP+TI+GAGGTAPNQ+LGAEHSQ
Sbjct:  394 QAGSSYDIPKLTQQTYGKTRAADEIIDEGHFIGKALGEGMNGYRPIVELMNTNFGIFGMAEISSAGNTYATTGGQFDMPMTIVGAGGTAPNQALGAEHSQ 493
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BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Match: A4S8X1_OSTLU (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S8X1_OSTLU)

HSP 1 Score: 179 bits (453), Expect = 1.430e-53
Identity = 86/100 (86.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELMNTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ 300
            QAGSSY+IP   Q+ FG LRAADEIIDEGH +GKALGE MNGYRPIVELMN NFGIYGMAELSSAGNTYATTGGQF MP+T+IGAGGTAPNQSLGAEHSQ
Sbjct:   36 QAGSSYNIPANTQQAFGTLRAADEIIDEGHFMGKALGEAMNGYRPIVELMNANFGIYGMAELSSAGNTYATTGGQFQMPMTVIGAGGTAPNQSLGAEHSQ 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14624.3557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK3_ECTSI7.400e-5898.00Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S1D9A9_CYCTE5.460e-5688.00Pyruvate dehydrogenase E1 component subunit beta n... [more]
B8C5P9_THAPS9.290e-5687.00Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S2KDP0_9STRA2.180e-5589.00Pyruvate dehydrogenase E1 component subunit beta n... [more]
F0YJF4_AURAN3.520e-5587.00Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S1USZ6_9STRA1.600e-5488.00Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7S4HES2_9EUKA9.030e-5487.00Pyruvate dehydrogenase E1 component subunit beta n... [more]
A0A7R9UYB8_DIALT1.030e-5386.00Pyruvate dehydrogenase E1 component subunit beta (... [more]
A0A7S2M045_9STRA1.290e-5387.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A4S8X1_OSTLU1.430e-5386.00Pyruvate dehydrogenase E1 component subunit beta n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14624contigH-canaliculatus_F_contig14624:513..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue9.5e-49
Seed eggNOG ortholog2880.D8LEK3
Preferred nameodpA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,COG0462@1,KOG0225@2759,KOG0524@2759
EC1.2.4.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929211.6518147-CDS-H-canaliculatus_F_contig14624:512..7101622929211.6518147-CDS-H-canaliculatus_F_contig14624:512..710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14624 513..710 -
1696845719.6325302-CDS-H-canaliculatus_F_contig14624:512..7101696845719.6325302-CDS-H-canaliculatus_F_contig14624:512..710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14624 513..710 -
1622929211.67035-CDS-H-canaliculatus_F_contig14624:1127..12291622929211.67035-CDS-H-canaliculatus_F_contig14624:1127..1229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14624 1128..1229 -
1696845719.650714-CDS-H-canaliculatus_F_contig14624:1127..12291696845719.650714-CDS-H-canaliculatus_F_contig14624:1127..1229Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14624 1128..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14624.3557.1prot_H-canaliculatus_F_contig14624.3557.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14624 513..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14624.3557.1

>prot_H-canaliculatus_F_contig14624.3557.1 ID=prot_H-canaliculatus_F_contig14624.3557.1|Name=mRNA_H-canaliculatus_F_contig14624.3557.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
QAGSSYDIPKKLQEVFGPLRAADEIIDEGHIIGKALGEGMNGYRPIVELM
NTNFGIYGMAELSSAGNTYATTGGQFDMPLTIIGAGGTAPNQSLGAEHSQ
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mRNA from alignment at H-canaliculatus_F_contig14624:513..1229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14624.3557.1 ID=mRNA_H-canaliculatus_F_contig14624.3557.1|Name=mRNA_H-canaliculatus_F_contig14624.3557.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=717bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14624:513..1229- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCGGTTCGTCGTACGACATCCCCAAGAAGCTGCAGGAGGTGTTCGG
ACCCCTCAGGGCGGCGGACGAGATCATCGACGAGGGCCACATCATCGGGA
AGGTGAAGCCGAAGGGAAAAAAAAAAAACTTCCCGATCGGGGCGGCTTGG
CCGCTTCTTTAGTTTCGCCGCCCTTTTTCGTGCCAACGCCTCTTTCCTTA
ACGCGACTTTTCGGACATGCCTGACGGGTCGGTACAAGTATGCTGCGCGA
TCATAGATCGTAGATCATAGCATAGATCATAGATCACAGCATAGATCATA
GCACACCAGACGCGAAAGAACACGCGGCGCCTTGACAGCTCAACAGACGG
ATGAGCCCCGTCGCCCGCCATGGGAGCACAAAGCTCTTCATTCACGCCGC
GGCGGTACAGCAGCGGCGGGCCGGAGCGGTGGCCTTCCCTCTATCCTTCC
GCACCTGTCACCGTGGCCACCAAGCTCACGAGGTAGCGCTTCCTCTTCGC
TCTTTTCTCTTTCTTGCAGGCGCTCGGTGAGGGCATGAACGGGTACCGCC
CCATCGTGGAGCTCATGAACACCAACTTCGGCATCTACGGGATGGCGGAG
CTCAGCAGCGCGGGCAACACGTACGCCACCACCGGCGGACAGTTCGACAT
GCCCCTGACCATCATCGGGGCGGGAGGGACCGCCCCCAACCAGTCGCTCG
GAGCTGAGCACTCGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14624:513..1229-

>mRNA_H-canaliculatus_F_contig14624.3557.1 ID=mRNA_H-canaliculatus_F_contig14624.3557.1|Name=mRNA_H-canaliculatus_F_contig14624.3557.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14624:513..1229- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCCGGTTCGTCGTACGACATCCCCAAGAAGCTGCAGGAGGTGTTCGG
ACCCCTCAGGGCGGCGGACGAGATCATCGACGAGGGCCACATCATCGGGA
AGCAGGCCGGTTCGTCGTACGACATCCCCAAGAAGCTGCAGGAGGTGTTC
GGACCCCTCAGGGCGGCGGACGAGATCATCGACGAGGGCCACATCATCGG
GAAGGCGCTCGGTGAGGGCATGAACGGGTACCGCCCCATCGTGGAGCTCA
TGAACACCAACTTCGGCATCTACGGGATGGCGGAGCTCAGCAGCGCGGGC
AACACGTACGCCACCACCGGCGGACAGTTCGACATGCCCCTGACCATCAT
CGGGGCGGGAGGGACCGCCCCCAACCAGTCGCTCGGAGCTGAGCACTCGC
AGGCGCTCGGTGAGGGCATGAACGGGTACCGCCCCATCGTGGAGCTCATG
AACACCAACTTCGGCATCTACGGGATGGCGGAGCTCAGCAGCGCGGGCAA
CACGTACGCCACCACCGGCGGACAGTTCGACATGCCCCTGACCATCATCG
GGGCGGGAGGGACCGCCCCCAACCAGTCGCTCGGAGCTGAGCACTCGCAG
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