mRNA_H-canaliculatus_F_contig1461.3551.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.080e-20 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL
Sbjct: 32 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 73
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN) HSP 1 Score: 78.2 bits (191), Expect = 9.370e-17 Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYL
Sbjct: 34 GFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYL 75
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC) HSP 1 Score: 77.8 bits (190), Expect = 1.260e-16 Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYL
Sbjct: 33 GFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYL 74
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO) HSP 1 Score: 77.0 bits (188), Expect = 2.600e-16 Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
G+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYL
Sbjct: 32 GYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYL 73
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A803QDU2_CANSA (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A803QDU2_CANSA) HSP 1 Score: 76.6 bits (187), Expect = 3.780e-16 Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYL
Sbjct: 32 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYL 73
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: M5XGF4_PRUPE (Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF4_PRUPE) HSP 1 Score: 76.6 bits (187), Expect = 4.090e-16 Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYL
Sbjct: 32 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYL 73
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH) HSP 1 Score: 76.6 bits (187), Expect = 4.550e-16 Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYL
Sbjct: 39 GFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYL 80
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: I0YVI3_COCSC (Sm protein F n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YVI3_COCSC) HSP 1 Score: 76.3 bits (186), Expect = 4.950e-16 Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
G+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLY+
Sbjct: 33 GYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYM 74
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO) HSP 1 Score: 76.6 bits (187), Expect = 5.050e-16 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
G+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYL
Sbjct: 33 GYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYL 74
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Match: D8RPX7_SELML (Sm protein F n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPX7_SELML) HSP 1 Score: 75.9 bits (185), Expect = 6.830e-16 Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = -1
Query: 206 GFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYL 331
GFL+SVD+YMNL L +TEE++DG+FAGNLG+VLIRCNNVLYL
Sbjct: 32 GFLISVDSYMNLQLGNTEEFIDGQFAGNLGEVLIRCNNVLYL 73 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1461.3551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1461.3551.1 >prot_H-canaliculatus_F_contig1461.3551.1 ID=prot_H-canaliculatus_F_contig1461.3551.1|Name=mRNA_H-canaliculatus_F_contig1461.3551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=68bp MICPVGWARKVTAGDTPAINLEQMGSQVQHVVTANQNVSQVPRELAVHVLback to top mRNA from alignment at H-canaliculatus_F_contig1461:172..4495- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1461.3551.1 ID=mRNA_H-canaliculatus_F_contig1461.3551.1|Name=mRNA_H-canaliculatus_F_contig1461.3551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4324bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1461:172..4495- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1461:172..4495- >mRNA_H-canaliculatus_F_contig1461.3551.1 ID=mRNA_H-canaliculatus_F_contig1461.3551.1|Name=mRNA_H-canaliculatus_F_contig1461.3551.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=408bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1461:172..4495- (Hapterophycus canaliculatus Oshoro5f female)back to top |