mRNA_H-canaliculatus_F_contig146.3542.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig146.3542.1
Unique NamemRNA_H-canaliculatus_F_contig146.3542.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.250e-49
Identity = 89/140 (63.57%), Postives = 106/140 (75.71%), Query Frame = 1 
Query:    4 MNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            MNAAV+LTQV++Q G AQAAFR TLL + EG A ++DW+ L  ++TT VD AER SF+ AVHIF  N  ADDWNWRR+  L T IAR++AD ++ GYA + SDRFRGL G LFLAVG  +FI N VWTS  LANGAAGEV
Sbjct: 1339 MNAAVQLTQVMRQQGAAQAAFRETLLRIAEGEATEADWNTLRPRFTTAVDAAERESFDNAVHIFPTNGAADDWNWRRLQALGTPIARIDADHSMHGYAHIPSDRFRGLEGQLFLAVGARVFINNNVWTSGGLANGAAGEV 1478
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 6.680e-46
Identity = 81/141 (57.45%), Postives = 98/141 (69.50%), Query Frame = 1 
Query:    1 SMNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            SMN AVELTQV++Q GP QAAFR TLL + EG     DW +L  ++   V  AER +F++AVHIF  N  ADDWNWRR+  L T IAR+NA  TI GY  V+S+RFRGL  H+FLA+G  +F+ N VW S  LANGA GEV
Sbjct:  124 SMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVHNIVWVSAGLANGAVGEV 264
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.640e-45
Identity = 81/141 (57.45%), Postives = 98/141 (69.50%), Query Frame = 1 
Query:    1 SMNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            SMN AVELTQV++Q GP QAAFR TLL + EG     DW +L  ++   V  AER +F++AVHIF  N  ADDWNWRR+  L T IAR+NA  TI GY  V+S+RFRGL  H+FLA+G  +F+ N VW S  LANGA GEV
Sbjct:  528 SMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEV 668
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.810e-45
Identity = 81/141 (57.45%), Postives = 98/141 (69.50%), Query Frame = 1 
Query:    1 SMNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            SMN AVELTQV++Q GP QAAFR TLL + EG     DW +L  ++   V  AER +F++AVHIF  N  ADDWNWRR+  L T IAR+NA  TI GY  V+S+RFRGL  H+FLA+G  +F+ N VW S  LANGA GEV
Sbjct: 1269 SMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEV 1409
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A6H5KDM0_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.660e-19
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:    1 SMNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWR 231
            SMN AVELTQV++Q GP QAAFR TLL + EG     DW +L  ++   V  AER +F++AVHIF  N  ADDWNWR
Sbjct:  148 SMNNAVELTQVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDAVHIFPTNALADDWNWR 224
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A8D8TP72_9HEMI (ATP-dependent DNA helicase n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8TP72_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.420e-11
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:   58 AAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            AAFR  L  ++ G +  +DW  L  +  T +  AE +SF E++ +F+ N+E  D+N R+I+ L + +A + A           +D  +GL   L+LA G  I +   +W S  L NG+ G +
Sbjct:  251 AAFRDILDRLSVGKSSLNDWKELMKRNRTALCTAETQSFGESLRLFSTNSEVQDYNTRKISQLNSPVAIIPAKHNCSEAREADADSAQGLESKLYLAPGCRIMLRTNLWVSQGLVNGSLGTI 372
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BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A8D9E8T7_9HEMI (ATP-dependent DNA helicase n=2 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9E8T7_9HEMI)

HSP 1 Score: 70.5 bits (171), Expect = 2.170e-11
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:   58 AAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            AAFR  L  ++ G +  +DW  L  +  T +  AE +SF E++ +F+ N+E  D+N R+I+ L + +A + A           +D  +GL   L+LA G  I +   +W S  L NG+ G +
Sbjct: 1132 AAFRDILDRLSVGKSSLNDWKELMKRNRTALCTAETQSFGESLRLFSTNSEVQDYNTRKISQLNSPVAIIPARHNCSEAREADADSAQGLESKLYLAPGCRIMLKTNLWVSQGLVNGSLGTI 1253
[Close]
BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A6H5KA18_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA18_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.630e-8
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 SMNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVDEAERRSFEEA 183
            SMN AVELT+V++Q GP QAAFR TLL + EG     DW +L  ++   V  AER +F++A
Sbjct:  646 SMNNAVELTRVMRQQGPEQAAFRDTLLRIAEGMQTADDWDVLKRRFIAAVGAAERETFDDA 706
[Close]
BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Match: A0A8D9FEI8_9HEMI (ATP-dependent DNA helicase PIF1 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9FEI8_9HEMI)

HSP 1 Score: 59.3 bits (142), Expect = 7.540e-8
Identity = 29/89 (32.58%), Postives = 48/89 (53.93%), Query Frame = 1 
Query:  157 AERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGVASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV 423
            AE +SF E++ +F+ N+E  D+N R+I+ L + +A + A           +D  +GL   L+LA G  I +   +W S  L NG+ G +
Sbjct:    7 AETQSFGESLRLFSTNSEVQDYNTRKISQLNSPVAIIPAKHNCSEAREADADSAQGLESKLYLAPGCRIMLRTNLWVSQGLVNGSLGTI 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig146.3542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5K692_9PHAE3.250e-4963.57ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KDL6_9PHAE6.680e-4657.45ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K558_9PHAE4.640e-4557.45ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KFJ0_9PHAE4.810e-4557.45ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KDM0_9PHAE1.660e-1957.14ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A8D8TP72_9HEMI1.420e-1131.97ATP-dependent DNA helicase n=1 Tax=Cacopsylla mela... [more]
A0A8D9E8T7_9HEMI2.170e-1131.97ATP-dependent DNA helicase n=2 Tax=Cacopsylla mela... [more]
A0A6H5KA18_9PHAE4.630e-850.82ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A8D9FEI8_9HEMI7.540e-832.58ATP-dependent DNA helicase PIF1 n=1 Tax=Cacopsylla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig146contigH-canaliculatus_F_contig146:39936..40358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.3
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog5111.M1WIQ9
EggNOG free text desc.ATP-dependent DNA helicase PIF1
EggNOG OGs21AWX@147550,39RYU@33154,3G6A9@34397,3P64X@4751,3QU0F@4890,3TKC2@5125,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelClavicipitaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.1301558-CDS-H-canaliculatus_F_contig146:39935..403551622929209.1301558-CDS-H-canaliculatus_F_contig146:39935..40355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig146 39936..40355 -
1696845718.7505147-CDS-H-canaliculatus_F_contig146:39935..403551696845718.7505147-CDS-H-canaliculatus_F_contig146:39935..40355Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig146 39936..40355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929209.1472752-UTR-H-canaliculatus_F_contig146:40355..403581622929209.1472752-UTR-H-canaliculatus_F_contig146:40355..40358Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig146 40356..40358 -
1696845718.765756-UTR-H-canaliculatus_F_contig146:40355..403581696845718.765756-UTR-H-canaliculatus_F_contig146:40355..40358Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig146 40356..40358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig146.3542.1prot_H-canaliculatus_F_contig146.3542.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig146 39936..40355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig146.3542.1

>prot_H-canaliculatus_F_contig146.3542.1 ID=prot_H-canaliculatus_F_contig146.3542.1|Name=mRNA_H-canaliculatus_F_contig146.3542.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MNAAVELTQVVQQLGPAQAAFRRTLLSVTEGAAGQSDWSILHVQYTTRVD
EAERRSFEEAVHIFAINTEADDWNWRRITDLRTGIARVNADRTIGGYAGV
ASDRFRGLHGHLFLAVGPLIFIINKVWTSTDLANGAAGEV
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mRNA from alignment at H-canaliculatus_F_contig146:39936..40358-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig146.3542.1 ID=mRNA_H-canaliculatus_F_contig146.3542.1|Name=mRNA_H-canaliculatus_F_contig146.3542.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=423bp|location=Sequence derived from alignment at H-canaliculatus_F_contig146:39936..40358- (Hapterophycus canaliculatus Oshoro5f female)
AGCATGAACGCCGCCGTCGAGCTGACGCAGGTCGTGCAGCAGCTAGGGCC
GGCGCAAGCCGCCTTCCGCCGTACATTACTCAGCGTGACGGAAGGCGCTG
CCGGCCAGTCTGATTGGAGCATCCTCCACGTGCAGTACACCACCAGAGTC
GACGAAGCGGAGCGGAGAAGCTTCGAGGAGGCCGTGCACATCTTCGCCAT
CAACACCGAGGCGGACGACTGGAACTGGAGACGGATCACCGATCTCAGAA
CAGGCATCGCCAGGGTAAACGCCGACCGCACCATCGGTGGCTACGCTGGT
GTCGCCTCCGACAGGTTCCGAGGTCTTCATGGGCACCTCTTCCTCGCCGT
TGGACCCCTGATCTTCATTATTAACAAAGTCTGGACATCGACTGATCTCG
CCAACGGAGCCGCCGGTGAGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig146:39936..40358-

>mRNA_H-canaliculatus_F_contig146.3542.1 ID=mRNA_H-canaliculatus_F_contig146.3542.1|Name=mRNA_H-canaliculatus_F_contig146.3542.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig146:39936..40358- (Hapterophycus canaliculatus Oshoro5f female)
ATGAACGCCGCCGTCGAGCTGACGCAGGTCGTGCAGCAGCTAGGGCCGGC
GCAAGCCGCCTTCCGCCGTACATTACTCAGCGTGACGGAAGGCGCTGCCG
GCCAGTCTGATTGGAGCATCCTCCACGTGCAGTACACCACCAGAGTCGAC
GAAGCGGAGCGGAGAAGCTTCGAGGAGGCCGTGCACATCTTCGCCATCAA
CACCGAGGCGGACGACTGGAACTGGAGACGGATCACCGATCTCAGAACAG
GCATCGCCAGGGTAAACGCCGACCGCACCATCGGTGGCTACGCTGGTGTC
GCCTCCGACAGGTTCCGAGGTCTTCATGGGCACCTCTTCCTCGCCGTTGG
ACCCCTGATCTTCATTATTAACAAAGTCTGGACATCGACTGATCTCGCCA
ACGGAGCCGCCGGTGAGGTCATGAACGCCGCCGTCGAGCTGACGCAGGTC
GTGCAGCAGCTAGGGCCGGCGCAAGCCGCCTTCCGCCGTACATTACTCAG
CGTGACGGAAGGCGCTGCCGGCCAGTCTGATTGGAGCATCCTCCACGTGC
AGTACACCACCAGAGTCGACGAAGCGGAGCGGAGAAGCTTCGAGGAGGCC
GTGCACATCTTCGCCATCAACACCGAGGCGGACGACTGGAACTGGAGACG
GATCACCGATCTCAGAACAGGCATCGCCAGGGTAAACGCCGACCGCACCA
TCGGTGGCTACGCTGGTGTCGCCTCCGACAGGTTCCGAGGTCTTCATGGG
CACCTCTTCCTCGCCGTTGGACCCCTGATCTTCATTATTAACAAAGTCTG
GACATCGACTGATCTCGCCAACGGAGCCGCCGGTGAGGTC
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