mRNA_H-canaliculatus_F_contig146.3543.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig146.3543.1
Unique NamemRNA_H-canaliculatus_F_contig146.3543.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig146.3543.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.300e-5
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 3 
Query:   99 PIKSSPSDACYNTSIGAGCGFWCLQVHSGSALMGGVLRNVDMSR 230
            P+K +  D  Y+T+  A  G WCLQVHSGSAL  G+LRN+DMSR
Sbjct: 1339 PVKLALPDVRYSTAETAVSGSWCLQVHSGSALFKGILRNIDMSR 1382
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig146.3543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUZ4_9PHAE7.300e-559.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig146contigH-canaliculatus_F_contig146:46890..47449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size546
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929208.0577064-UTR-H-canaliculatus_F_contig146:46889..469031622929208.0577064-UTR-H-canaliculatus_F_contig146:46889..46903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig146 46890..46903 +
1696845718.187162-UTR-H-canaliculatus_F_contig146:46889..469031696845718.187162-UTR-H-canaliculatus_F_contig146:46889..46903Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig146 46890..46903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929208.0736334-CDS-H-canaliculatus_F_contig146:46903..474491622929208.0736334-CDS-H-canaliculatus_F_contig146:46903..47449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig146 46904..47449 +
1696845718.199832-CDS-H-canaliculatus_F_contig146:46903..474491696845718.199832-CDS-H-canaliculatus_F_contig146:46903..47449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig146 46904..47449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig146.3543.1prot_H-canaliculatus_F_contig146.3543.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig146 46904..47449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig146.3543.1

>prot_H-canaliculatus_F_contig146.3543.1 ID=prot_H-canaliculatus_F_contig146.3543.1|Name=mRNA_H-canaliculatus_F_contig146.3543.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=182bp
MDSGDPANFQATRHKTTTTSSASSMTLDPIKSSPSDACYNTSIGAGCGFW
CLQVHSGSALMGGVLRNVDMSRSIAVTEPSEGTPRDTCSLARGAGHPLVY
LRTFARSMNEISWLAYLVSKSFSQGIGTRATDVIFSRFSSLIDIDAFHDT
TVHDIPPAGNCSLLFSHFTTLYRCHVIDLFNS
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mRNA from alignment at H-canaliculatus_F_contig146:46890..47449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig146.3543.1 ID=mRNA_H-canaliculatus_F_contig146.3543.1|Name=mRNA_H-canaliculatus_F_contig146.3543.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=560bp|location=Sequence derived from alignment at H-canaliculatus_F_contig146:46890..47449+ (Hapterophycus canaliculatus Oshoro5f female)
CAAGGCCCAACAATATGGACTCTGGTGACCCGGCGAATTTTCAGGCAACG
CGCCACAAGACAACCACTACATCGTCCGCTTCCTCGATGACCCTAGACCC
AATCAAGAGTTCCCCTTCGGATGCTTGCTACAACACCTCCATCGGCGCTG
GCTGCGGCTTCTGGTGCCTGCAAGTCCACAGCGGCAGCGCCCTCATGGGG
GGCGTTCTTCGCAACGTTGACATGTCCCGCAGCATTGCTGTCACGGAACC
CTCGGAAGGTACCCCACGCGACACCTGTAGTTTAGCTCGTGGTGCGGGCC
ATCCCCTTGTTTATTTACGGACCTTCGCGCGAAGTATGAATGAGATATCG
TGGTTGGCTTATCTGGTTTCCAAGTCATTCTCGCAAGGGATAGGAACACG
TGCGACTGATGTCATATTCTCCCGATTTTCTTCTTTGATTGACATCGACG
CTTTCCACGACACTACTGTGCATGACATTCCGCCCGCCGGGAATTGTTCT
CTTCTGTTCTCTCATTTCACGACTCTGTACCGTTGTCACGTAATTGATCT
GTTCAATTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig146:46890..47449+

>mRNA_H-canaliculatus_F_contig146.3543.1 ID=mRNA_H-canaliculatus_F_contig146.3543.1|Name=mRNA_H-canaliculatus_F_contig146.3543.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1092bp|location=Sequence derived from alignment at H-canaliculatus_F_contig146:46890..47449+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACTCTGGTGACCCGGCGAATTTTCAGGCAACGCGCCACAAGACAAC
CACTACATCGTCCGCTTCCTCGATGACCCTAGACCCAATCAAGAGTTCCC
CTTCGGATGCTTGCTACAACACCTCCATCGGCGCTGGCTGCGGCTTCTGG
TGCCTGCAAGTCCACAGCGGCAGCGCCCTCATGGGGGGCGTTCTTCGCAA
CGTTGACATGTCCCGCAGCATTGCTGTCACGGAACCCTCGGAAGGTACCC
CACGCGACACCTGTAGTTTAGCTCGTGGTGCGGGCCATCCCCTTGTTTAT
TTACGGACCTTCGCGCGAAGTATGAATGAGATATCGTGGTTGGCTTATCT
GGTTTCCAAGTCATTCTCGCAAGGGATAGGAACACGTGCGACTGATGTCA
TATTCTCCCGATTTTCTTCTTTGATTGACATCGACGCTTTCCACGACACT
ACTGTGCATGACATTCCGCCCGCCGGGAATTGTTCTCTTCTGTTCTCTCA
TTTCACGACTCTGTACCGTTGTCACGTAATTGATCTGTTCAATTCTATGG
ACTCTGGTGACCCGGCGAATTTTCAGGCAACGCGCCACAAGACAACCACT
ACATCGTCCGCTTCCTCGATGACCCTAGACCCAATCAAGAGTTCCCCTTC
GGATGCTTGCTACAACACCTCCATCGGCGCTGGCTGCGGCTTCTGGTGCC
TGCAAGTCCACAGCGGCAGCGCCCTCATGGGGGGCGTTCTTCGCAACGTT
GACATGTCCCGCAGCATTGCTGTCACGGAACCCTCGGAAGGTACCCCACG
CGACACCTGTAGTTTAGCTCGTGGTGCGGGCCATCCCCTTGTTTATTTAC
GGACCTTCGCGCGAAGTATGAATGAGATATCGTGGTTGGCTTATCTGGTT
TCCAAGTCATTCTCGCAAGGGATAGGAACACGTGCGACTGATGTCATATT
CTCCCGATTTTCTTCTTTGATTGACATCGACGCTTTCCACGACACTACTG
TGCATGACATTCCGCCCGCCGGGAATTGTTCTCTTCTGTTCTCTCATTTC
ACGACTCTGTACCGTTGTCACGTAATTGATCTGTTCAATTCT
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