mRNA_H-canaliculatus_F_contig14594.3536.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14594.3536.1
Unique NamemRNA_H-canaliculatus_F_contig14594.3536.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: D8LTU1_ECTSI (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTU1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 5.770e-39
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1
Query:    1 GTTVGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            G  VGASTAYHLALRG+KP+V+ERS VAAAASGKAGGFLAGGWGSG TVPMHEISF+MHEKLAETLGVTSYRKIPTLSV
Sbjct:   17 GGIVGASTAYHLALRGVKPIVIERSNVAAAASGKAGGFLAGGWGSGPTVPMHEISFDMHEKLAETLGVTSYRKIPTLSV 95          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A7S0QTC4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QTC4_9CRYP)

HSP 1 Score: 107 bits (268), Expect = 1.220e-27
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1
Query:    1 GTTVGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGS-TVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            G  +GAS AYHL+ RG++P+VVERSKV AAASGKAGGFLAGGWG GS T  +H +SF MHE+LA+ LG+ S+RKI TLSV
Sbjct:   76 GGIIGASIAYHLSKRGVQPLVVERSKVGAAASGKAGGFLAGGWGDGSVTQQLHRVSFRMHEELAKELGIKSFRKIETLSV 155          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A813DZI3_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DZI3_POLGL)

HSP 1 Score: 101 bits (252), Expect = 2.120e-24
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   13 GASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            GA+ AY L LRG+KPVVVER KVAAAASGK GGFLA  WG   T  +H +SF++HE+LAETLG+ SYR++P LSV
Sbjct:   83 GAALAYFLTLRGVKPVVVEREKVAAAASGKGGGFLARDWGDAITRQLHRVSFKLHEELAETLGIQSYRRLPVLSV 157          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A1Q9D1J6_SYMMI (Putative oxidoreductase C1F5.03c n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D1J6_SYMMI)

HSP 1 Score: 98.6 bits (244), Expect = 3.480e-24
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   13 GASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLS 234
            GA+ AY L  RG+KPVVVER KVAAAASGK GGFLA  WG   T  +H +SF++HE+LAETLG+ SYRK+P LS
Sbjct:   64 GAALAYFLTRRGVKPVVVERDKVAAAASGKGGGFLARDWGDSITRKLHTVSFKLHEELAETLGIESYRKLPVLS 137          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A7S1J696_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J696_9EUGL)

HSP 1 Score: 103 bits (257), Expect = 3.780e-24
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   10 VGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSVC 240
            +GAS AY+L L+G KP VVER +VAAAA GK GGFLAGGWG G T  +H  SFE+HE+LA  L + SYRKIPT+SVC
Sbjct:  110 IGASIAYYLTLKGFKPTVVERKEVAAAAGGKGGGFLAGGWGYGVTEQLHTKSFELHEELARELDLKSYRKIPTISVC 186          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A7S0HI94_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HI94_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 5.960e-24
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 GTTVGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            G    A+ AY+L+LRG+ P ++ERS++A AASGKAGGF+A GWG+G T   HE+SF++HE+L+  L +  YRK+PTLSV
Sbjct:   51 GGIQSAAIAYYLSLRGVAPTIIERSEIACAASGKAGGFMARGWGNGDTAEFHEVSFDLHEQLSRDLKLKGYRKLPTLSV 129          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A813J7Y6_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813J7Y6_POLGL)

HSP 1 Score: 101 bits (252), Expect = 1.600e-23
Identity = 50/75 (66.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   13 GASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            GA+ AY L LRG+KPVVVER KVAAAASGK GGFLA  WG   T  +H +SF++HE+LAETLG+ SYR++P LSV
Sbjct:   83 GAALAYFLTLRGVKPVVVEREKVAAAASGKGGGFLARDWGDAITRQLHRVSFKLHEELAETLGIQSYRRLPVLSV 157          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A7S0CUG7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CUG7_MICPS)

HSP 1 Score: 100 bits (250), Expect = 2.540e-23
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    1 GTTVGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGS-TVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            G   G +TAY LA RG+   +VER ++AAAASGKAGGFLAGGWG G  T  +H +SF +HE LAETLG+T+YRKIPTLSV
Sbjct:   47 GGIQGCATAYFLAQRGVPSTIVERVEIAAAASGKAGGFLAGGWGDGGVTQELHRVSFALHETLAETLGLTTYRKIPTLSV 126          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A835ZIK8_9STRA (FAD dependent oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.590e-23
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 GTTVGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            G  + AS AYHL  +G+KP+V+ERS+VAAAASGK+GGFLA  WGSG  V +H  SF +HEKLA+ L V S+RK+PTLSV
Sbjct:   16 GGIIAASIAYHLTQKGVKPIVLERSEVAAAASGKSGGFLARDWGSGPAVQLHTASFALHEKLAKELTVESFRKLPTLSV 94          
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Match: A0A7S3AF44_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AF44_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 4.660e-23
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:   13 GASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVPMHEISFEMHEKLAETLGVTSYRKIPTLSV 237
            GA+ AY+L LRG+KP++V+R  VAAAASGK GGFLA  WGSG TV +H++SF +HE+LA+ L + SYRKIP LSV
Sbjct:   18 GAALAYYLTLRGVKPLIVDRHSVAAAASGKGGGFLARDWGSGPTVALHKVSFALHEELAKELDIQSYRKIPVLSV 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14594.3536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU1_ECTSI5.770e-3989.87DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0QTC4_9CRYP1.220e-2768.75Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A813DZI3_POLGL2.120e-2466.67Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A1Q9D1J6_SYMMI3.480e-2466.22Putative oxidoreductase C1F5.03c n=1 Tax=Symbiodin... [more]
A0A7S1J696_9EUGL3.780e-2466.23Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S0HI94_9CRYP5.960e-2455.70Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A813J7Y6_POLGL1.600e-2366.67Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S0CUG7_MICPS2.540e-2365.00Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A835ZIK8_9STRA2.590e-2363.29FAD dependent oxidoreductase n=1 Tax=Tribonema min... [more]
A0A7S3AF44_9EUKA4.660e-2364.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14594contigH-canaliculatus_F_contig14594:823..1068 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.1e-31
Seed eggNOG ortholog2880.D8LTU1
KEGG koko:K01228
KEGG ReactionR05979
KEGG Pathwayko00510,ko01100,ko04141,map00510,map01100,map04141
KEGG ModuleM00073
GOsGO:0000003,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0006810,GO:0007049,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016192,GO:0016197,GO:0016482,GO:0016491,GO:0022414,GO:0031410,GO:0031982,GO:0042147,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051179,GO:0051234,GO:0051321,GO:0051641,GO:0051649,GO:0055114,GO:0097708
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsCOG0665@1,KOG2852@2759
EC3.2.1.106
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD dependent oxidoreductase
Ec32 orthologEc-28_002770.1
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.8059554-CDS-H-canaliculatus_F_contig14594:822..10681622929207.8059554-CDS-H-canaliculatus_F_contig14594:822..1068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14594 823..1068 +
1696845718.0905397-CDS-H-canaliculatus_F_contig14594:822..10681696845718.0905397-CDS-H-canaliculatus_F_contig14594:822..1068Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14594 823..1068 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14594.3536.1prot_H-canaliculatus_F_contig14594.3536.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14594 823..1068 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14594.3536.1

>prot_H-canaliculatus_F_contig14594.3536.1 ID=prot_H-canaliculatus_F_contig14594.3536.1|Name=mRNA_H-canaliculatus_F_contig14594.3536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
GTTVGASTAYHLALRGIKPVVVERSKVAAAASGKAGGFLAGGWGSGSTVP
MHEISFEMHEKLAETLGVTSYRKIPTLSVCD*
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mRNA from alignment at H-canaliculatus_F_contig14594:823..1068+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14594.3536.1 ID=mRNA_H-canaliculatus_F_contig14594.3536.1|Name=mRNA_H-canaliculatus_F_contig14594.3536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=246bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14594:823..1068+ (Hapterophycus canaliculatus Oshoro5f female)
GGCACGACAGTCGGAGCAAGCACGGCGTACCATCTGGCTTTGCGCGGCAT CAAGCCTGTGGTCGTCGAGCGCAGCAAAGTCGCCGCCGCCGCGAGCGGGA AGGCTGGCGGCTTCCTGGCCGGAGGCTGGGGGAGCGGGTCGACCGTGCCC ATGCACGAGATCAGTTTCGAGATGCACGAGAAGCTCGCGGAGACGCTCGG AGTGACCTCGTACCGCAAGATCCCCACCCTGTCGGTGTGCGACTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14594:823..1068+

>mRNA_H-canaliculatus_F_contig14594.3536.1 ID=mRNA_H-canaliculatus_F_contig14594.3536.1|Name=mRNA_H-canaliculatus_F_contig14594.3536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14594:823..1068+ (Hapterophycus canaliculatus Oshoro5f female)
GGCACGACAGTCGGAGCAAGCACGGCGTACCATCTGGCTTTGCGCGGCAT
CAAGCCTGTGGTCGTCGAGCGCAGCAAAGTCGCCGCCGCCGCGAGCGGGA
AGGCTGGCGGCTTCCTGGCCGGAGGCTGGGGGAGCGGGTCGACCGTGCCC
ATGCACGAGATCAGTTTCGAGATGCACGAGAAGCTCGCGGAGACGCTCGG
AGTGACCTCGTACCGCAAGATCCCCACCCTGTCGGTGTGCGACTGAGGCA
CGACAGTCGGAGCAAGCACGGCGTACCATCTGGCTTTGCGCGGCATCAAG
CCTGTGGTCGTCGAGCGCAGCAAAGTCGCCGCCGCCGCGAGCGGGAAGGC
TGGCGGCTTCCTGGCCGGAGGCTGGGGGAGCGGGTCGACCGTGCCCATGC
ACGAGATCAGTTTCGAGATGCACGAGAAGCTCGCGGAGACGCTCGGAGTG
ACCTCGTACCGCAAGATCCCCACCCTGTCGGTGTGCGACTGA
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