mRNA_H-canaliculatus_F_contig14586.3533.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14586.3533.1
Unique NamemRNA_H-canaliculatus_F_contig14586.3533.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14586.3533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14586contigH-canaliculatus_F_contig14586:563..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1057
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14586.3533.1prot_H-canaliculatus_F_contig14586.3533.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14586 629..1201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.560636-UTR-H-canaliculatus_F_contig14586:562..6281622929207.560636-UTR-H-canaliculatus_F_contig14586:562..628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14586 563..628 +
1696845717.9797378-UTR-H-canaliculatus_F_contig14586:562..6281696845717.9797378-UTR-H-canaliculatus_F_contig14586:562..628Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14586 563..628 +
1622929207.591939-UTR-H-canaliculatus_F_contig14586:1201..16191622929207.591939-UTR-H-canaliculatus_F_contig14586:1201..1619Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14586 1202..1619 +
1696845718.0064332-UTR-H-canaliculatus_F_contig14586:1201..16191696845718.0064332-UTR-H-canaliculatus_F_contig14586:1201..1619Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14586 1202..1619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.5797026-CDS-H-canaliculatus_F_contig14586:628..12011622929207.5797026-CDS-H-canaliculatus_F_contig14586:628..1201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14586 629..1201 +
1696845717.9917624-CDS-H-canaliculatus_F_contig14586:628..12011696845717.9917624-CDS-H-canaliculatus_F_contig14586:628..1201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14586 629..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14586.3533.1

>prot_H-canaliculatus_F_contig14586.3533.1 ID=prot_H-canaliculatus_F_contig14586.3533.1|Name=mRNA_H-canaliculatus_F_contig14586.3533.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
MGRGRRQVVGVQEKVPNRGFVIEARFSSSSLSVLLWCVDGGARETHTLAR
RIMFVLPVSWGGEWGHGVFGRRDPHHDVYGVFSSRPPALLSRAVCSLKNV
FRETALTKMEPRAMVREAPFRLSGGQVGGGLCAQEQRRVRHRWDGKALQQ
QQQQQQQSRFFQRVCPVGGAFSATRAHENVRRGRRSLGRY*
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mRNA from alignment at H-canaliculatus_F_contig14586:563..1619+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14586.3533.1 ID=mRNA_H-canaliculatus_F_contig14586.3533.1|Name=mRNA_H-canaliculatus_F_contig14586.3533.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14586:563..1619+ (Hapterophycus canaliculatus Oshoro5f female)
ACTGCGTTCTCGGCCGAGCTCAGCGGATGATGGCGTTTGGTCCCCTCTCT
CTCTCTTTGTGTCGGGATGGGAAGAGGACGGCGGCAGGTTGTAGGGGTGC
AGGAGAAGGTGCCGAACCGCGGCTTCGTTATCGAGGCACGCTTTTCTTCC
TCCTCTCTTTCCGTTTTGTTGTGGTGCGTTGATGGTGGTGCACGTGAAAC
TCACACACTAGCTCGTCGTATTATGTTTGTATTACCCGTGTCCTGGGGCG
GGGAGTGGGGGCATGGCGTTTTTGGGCGGCGAGACCCGCACCACGATGTT
TACGGTGTCTTCTCGTCTCGTCCTCCTGCGTTGTTAAGTCGTGCTGTTTG
CTCGTTGAAGAATGTTTTTCGAGAGACCGCGCTCACAAAAATGGAGCCGC
GCGCGATGGTACGTGAAGCACCCTTTCGATTATCCGGGGGCCAAGTTGGT
GGAGGTCTGTGTGCACAAGAACAGCGCAGGGTCCGACATCGTTGGGATGG
GAAAGCACTACAGCAGCAGCAGCAGCAGCAGCAGCAGTCACGCTTTTTTC
AACGAGTCTGTCCGGTGGGCGGGGCGTTTTCTGCAACCCGTGCGCACGAA
AATGTCAGGCGGGGTCGACGTTCCTTAGGCCGTTATTAAACTGTTCATTG
ATGAGCAGCTTCGTCGCTTTACGCTCGAACCCTCACCTTTCTCCAAGTCT
CAAACGGCGCCAGCGCTCGTGTCTGTGTGTCTGTGTGCTTGTGTGTGTGA
ACCTCGCCCCACATCGTGCCCCCGCACGCATACACGAAACCCCCTTAGAG
GGCGGCTGCGAAGGGAACCCAGAGGATCGGTAGTCCCAGCTGAGCTAATG
TCCCTAGGGTTGGCGACAGGCGCCAGGTGCTTGGTTTGTGCGCTGGTCGA
ACATGGGTGGCGAGTGGGAGAAGCCGGCACGGCACAGAGGTGTCGGCGCC
ATCGATGACGAAAAGGTAACGCGTGTTGGTAGGCGCGGCGCACTCGGGGC
AATCGCGCAGTTGTGCCTGCAAGGCCCGCTCGAGAAAGCAAACAAAGAGA
GGCAGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14586:563..1619+

>mRNA_H-canaliculatus_F_contig14586.3533.1 ID=mRNA_H-canaliculatus_F_contig14586.3533.1|Name=mRNA_H-canaliculatus_F_contig14586.3533.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14586:563..1619+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAAGAGGACGGCGGCAGGTTGTAGGGGTGCAGGAGAAGGTGCCGAA
CCGCGGCTTCGTTATCGAGGCACGCTTTTCTTCCTCCTCTCTTTCCGTTT
TGTTGTGGTGCGTTGATGGTGGTGCACGTGAAACTCACACACTAGCTCGT
CGTATTATGTTTGTATTACCCGTGTCCTGGGGCGGGGAGTGGGGGCATGG
CGTTTTTGGGCGGCGAGACCCGCACCACGATGTTTACGGTGTCTTCTCGT
CTCGTCCTCCTGCGTTGTTAAGTCGTGCTGTTTGCTCGTTGAAGAATGTT
TTTCGAGAGACCGCGCTCACAAAAATGGAGCCGCGCGCGATGGTACGTGA
AGCACCCTTTCGATTATCCGGGGGCCAAGTTGGTGGAGGTCTGTGTGCAC
AAGAACAGCGCAGGGTCCGACATCGTTGGGATGGGAAAGCACTACAGCAG
CAGCAGCAGCAGCAGCAGCAGTCACGCTTTTTTCAACGAGTCTGTCCGGT
GGGCGGGGCGTTTTCTGCAACCCGTGCGCACGAAAATGTCAGGCGGGGTC
GACGTTCCTTAGGCCGTTATTAAATGGGAAGAGGACGGCGGCAGGTTGTA
GGGGTGCAGGAGAAGGTGCCGAACCGCGGCTTCGTTATCGAGGCACGCTT
TTCTTCCTCCTCTCTTTCCGTTTTGTTGTGGTGCGTTGATGGTGGTGCAC
GTGAAACTCACACACTAGCTCGTCGTATTATGTTTGTATTACCCGTGTCC
TGGGGCGGGGAGTGGGGGCATGGCGTTTTTGGGCGGCGAGACCCGCACCA
CGATGTTTACGGTGTCTTCTCGTCTCGTCCTCCTGCGTTGTTAAGTCGTG
CTGTTTGCTCGTTGAAGAATGTTTTTCGAGAGACCGCGCTCACAAAAATG
GAGCCGCGCGCGATGGTACGTGAAGCACCCTTTCGATTATCCGGGGGCCA
AGTTGGTGGAGGTCTGTGTGCACAAGAACAGCGCAGGGTCCGACATCGTT
GGGATGGGAAAGCACTACAGCAGCAGCAGCAGCAGCAGCAGCAGTCACGC
TTTTTTCAACGAGTCTGTCCGGTGGGCGGGGCGTTTTCTGCAACCCGTGC
GCACGAAAATGTCAGGCGGGGTCGACGTTCCTTAGGCCGTTATTAA
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