mRNA_H-canaliculatus_F_contig1458.3529.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1458.3529.1
Unique NamemRNA_H-canaliculatus_F_contig1458.3529.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: D8LH46_ECTSI (Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH46_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.050e-74
Identity = 123/148 (83.11%), Postives = 124/148 (83.78%), Query Frame = 2 
Query:    2 MAVTEADAIKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            MAVTEADAIKDLT EEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPT+KQLEDMM KVDLDGNGLINFAEFVTMMRKCKVDTDFDR                      GNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE
Sbjct:    1 MAVTEADAIKDLTGEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTNKQLEDMMAKVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 148
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: A0A6H5JMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 5.660e-41
Identity = 81/121 (66.94%), Postives = 82/121 (67.77%), Query Frame = 2 
Query:  131 MTSLGYSPTDKQLEDMMEK----------------VDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            MTSLGYSPT+KQLEDMM K                VDLDGNGLINFAEFVTMMRKCKVDTDFDR                      GNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE
Sbjct:    1 MTSLGYSPTNKQLEDMMAKASSGSVFFLEWAVLLLVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 121
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: A0A835YUT0_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.410e-34
Identity = 69/127 (54.33%), Postives = 84/127 (66.14%), Query Frame = 2 
Query:   26 IKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQE 406
            +++ T+EE+ED +E F  FDKD SGEID  EL TVM SLGY+PTD+QL DMM KVD+DGNG I+F EFV MMRKC+V+TDFDR                        IM+ LGA L+D EI LLV+E
Sbjct:    9 MREATEEELEDYREAFNNFDKDQSGEIDEYELGTVMRSLGYNPTDEQLHDMMLKVDIDGNGSISFDEFVIMMRKCEVETDFDREITEAFKVFDKDGSGSIDKEELTAIMKGLGANLSDQEIELLVRE 135
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: A0A835YVF8_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.220e-33
Identity = 67/141 (47.52%), Postives = 86/141 (60.99%), Query Frame = 2 
Query:   23 AIKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            A + LT EEVED +E F+ FDKDG+GEIDL EL  VM SLGYSPTDKQL DM+++          F EFV MMR+C++ TDF+                        ++MR LGA L+D EI LLV+EAD +GDG + ++E
Sbjct:    4 AARALTKEEVEDYEEAFKNFDKDGNGEIDLKELGIVMRSLGYSPTDKQLRDMLKQAXXXXXXXXTFNEFVEMMRRCELSTDFEMEIKGAFEFFDKDGDGDITSEELASVMRGLGANLSDQEIALLVKEADKNGDGAISLHE 144
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: A0A835Z1Q3_9STRA (Calmodulin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.430e-32
Identity = 71/147 (48.30%), Postives = 91/147 (61.90%), Query Frame = 2 
Query:    5 AVTEADAIKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            A T +  +++LT EE++D KE F  FDKDG+GEID  EL TVM SLGY+PTD+QL DMM  +DLDGN      EFVTMMRKC+V+TDFDR                        IM+        ++I LLV+EADVDGDG ++++E
Sbjct:    3 AFTASSEMRELTQEELDDYKEAFDNFDKDGNGEIDEIELSTVMRSLGYNPTDEQLHDMMLNIDLDGN------EFVTMMRKCEVETDFDREVREAFQVFDRDGSGAIDKAELTVIMK--------AKIELLVREADVDGDGAINLDE 135
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: A0A0G4J4G0_PLABS (Calmodulin n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4J4G0_PLABS)

HSP 1 Score: 117 bits (292), Expect = 1.110e-30
Identity = 78/139 (56.12%), Postives = 100/139 (71.94%), Query Frame = 2 
Query:   29 KDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            K LTDE++ + KE F  FDKDG G I   EL TVM SLG +PT+ +L+DM+ +VD DGNG I+F EF+TMM +   DTD + XXXXXXXXXXXXXXXX       ++M  LG KLTD E++ +++EADVDGDGQ++  E
Sbjct:    6 KQLTDEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEDXXXXXXXXXXXXXXXXISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 144
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: UPI001B88E3BC (calmodulin-A-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88E3BC)

HSP 1 Score: 116 bits (290), Expect = 2.040e-30
Identity = 78/138 (56.52%), Postives = 101/138 (73.19%), Query Frame = 2 
Query:   32 DLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            DLT+E++ + KE F  FDKDG G I   EL TVM SLG +PT+ +L+DM+ +VD DGNG I+F EF+TMM +   DTD + XXXXXXXXXXXXXXXXX      ++M  LG KLTD E++ +++EAD+DGDGQV+  E
Sbjct:    4 DLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEXXXXXXXXXXXXXXXXXXSAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: Q9LDQ9_CHACB (Calmodulin n=2 Tax=Chara TaxID=13778 RepID=Q9LDQ9_CHACB)

HSP 1 Score: 115 bits (288), Expect = 3.970e-30
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = 2 
Query:   26 IKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            + DLTDE++ + KE F  FDKDG G I   EL TVM SLG +PT+ +L+DM+ +VD+DGNG I+F EF+ +M +   DTD   XXXXXXXXXXXXXXXX       ++M  LG KLTD E++ +++EADVDGDGQV+  E
Sbjct:    1 MSDLTDEQISEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDVDGNGTIDFHEFLNLMARKMKDTDSXXXXXXXXXXXXXXXXXXISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEE 140
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: A0A2R6X981_MARPO (Uncharacterized protein n=4 Tax=Embryophyta TaxID=3193 RepID=A0A2R6X981_MARPO)

HSP 1 Score: 115 bits (287), Expect = 5.790e-30
Identity = 74/140 (52.86%), Postives = 101/140 (72.14%), Query Frame = 2 
Query:   26 IKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            ++ LT+E++ + KE F  FDKDG G I   EL TVM SLG +PT+ +L+DM+ +VD DGNG I+FAEF+++M +   DTD + XXXXXXXXXXXXXXX        ++M  LG KLTD E++ +++EADVDGDGQ++  E
Sbjct:    2 VEQLTEEQIAEFKEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFAEFLSLMARKMKDTDSEXXXXXXXXXXXXXXXXFISAMELRHVMTNLGEKLTDDEVDEMIREADVDGDGQINYEE 141
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Match: UPI001CC3B09A (calmodulin-1-like n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC3B09A)

HSP 1 Score: 115 bits (287), Expect = 5.790e-30
Identity = 61/137 (44.53%), Postives = 82/137 (59.85%), Query Frame = 2 
Query:   35 LTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYSPTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRXXXXXXXXXXXXXXXXXXXXXXGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE 445
            LT+E++ + KE F  FDKDG G I   EL TVM SLG +PT+ +L+DM+ +VD DGNG I+F EF+TMM +   DTD                          ++M  LG KLTD E++ ++QEAD+DGDGQV+  E
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSKEEIREAFRVFDQDGNGYISAADLRHVMTNLGEKLTDEEVDEMIQEADIDGDGQVNYEE 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1458.3529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH46_ECTSI1.050e-7483.11Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JMU5_9PHAE5.660e-4166.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YUT0_9STRA1.410e-3454.33Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
A0A835YVF8_9STRA8.220e-3347.52Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
A0A835Z1Q3_9STRA5.430e-3248.30Calmodulin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A0G4J4G0_PLABS1.110e-3056.12Calmodulin n=2 Tax=Plasmodiophoridae TaxID=37358 R... [more]
UPI001B88E3BC2.040e-3056.52calmodulin-A-like n=1 Tax=Gigantopelta aegis TaxID... [more]
Q9LDQ9_CHACB3.970e-3055.00Calmodulin n=2 Tax=Chara TaxID=13778 RepID=Q9LDQ9_... [more]
A0A2R6X981_MARPO5.790e-3052.86Uncharacterized protein n=4 Tax=Embryophyta TaxID=... [more]
UPI001CC3B09A5.790e-3044.53calmodulin-1-like n=1 Tax=Dromiciops gliroides Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1458contigH-canaliculatus_F_contig1458:661..6267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.2
Seed ortholog evalue1.3e-57
Seed eggNOG ortholog2880.D8LH46
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain
Ec32 orthologEc-24_000510.1
Exons4
Model size445
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1458.3529.1prot_H-canaliculatus_F_contig1458.3529.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1458 661..6266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.0776925-CDS-H-canaliculatus_F_contig1458:660..8101622929207.0776925-CDS-H-canaliculatus_F_contig1458:660..810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 661..810 -
1696845717.7744646-CDS-H-canaliculatus_F_contig1458:660..8101696845717.7744646-CDS-H-canaliculatus_F_contig1458:660..810Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 661..810 -
1622929207.0950446-CDS-H-canaliculatus_F_contig1458:1262..13701622929207.0950446-CDS-H-canaliculatus_F_contig1458:1262..1370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 1263..1370 -
1696845717.7876341-CDS-H-canaliculatus_F_contig1458:1262..13701696845717.7876341-CDS-H-canaliculatus_F_contig1458:1262..1370Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 1263..1370 -
1622929207.1121008-CDS-H-canaliculatus_F_contig1458:2424..25231622929207.1121008-CDS-H-canaliculatus_F_contig1458:2424..2523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 2425..2523 -
1696845717.79642-CDS-H-canaliculatus_F_contig1458:2424..25231696845717.79642-CDS-H-canaliculatus_F_contig1458:2424..2523Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 2425..2523 -
1622929207.1277308-CDS-H-canaliculatus_F_contig1458:6179..62661622929207.1277308-CDS-H-canaliculatus_F_contig1458:6179..6266Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 6180..6266 -
1696845717.8116636-CDS-H-canaliculatus_F_contig1458:6179..62661696845717.8116636-CDS-H-canaliculatus_F_contig1458:6179..6266Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1458 6180..6266 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929207.1455274-UTR-H-canaliculatus_F_contig1458:6266..62671622929207.1455274-UTR-H-canaliculatus_F_contig1458:6266..6267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1458 6267..6267 -
1696845717.822951-UTR-H-canaliculatus_F_contig1458:6266..62671696845717.822951-UTR-H-canaliculatus_F_contig1458:6266..6267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1458 6267..6267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1458.3529.1

>prot_H-canaliculatus_F_contig1458.3529.1 ID=prot_H-canaliculatus_F_contig1458.3529.1|Name=mRNA_H-canaliculatus_F_contig1458.3529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
MAVTEADAIKDLTDEEVEDLKETFRTFDKDGSGEIDLDELRTVMTSLGYS
PTDKQLEDMMEKVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFF
DQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINE
back to top

mRNA from alignment at H-canaliculatus_F_contig1458:661..6267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1458.3529.1 ID=mRNA_H-canaliculatus_F_contig1458.3529.1|Name=mRNA_H-canaliculatus_F_contig1458.3529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5607bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:661..6267- (Hapterophycus canaliculatus Oshoro5f female)
GATGGCGGTAACTGAGGCAGACGCGATCAAGGACTTGACAGACGAGGAAG
TGGAGGATCTCAAGGAGACATTTCGCACATTCGACAAGGTAAGGGTTACG
CTAAAAAACAGGGAAAGGACGTGCACACGGTCAAAGCTCCATGCGTACAA
CATCTCTTCCCCTTCAAGTCTCCCGTGATCGTTATCACCTGTCCTTGGGG
TGCTGGTCTCCTCAACGCTGCGCGGCTGAAATGCTTCGAAACACAAGTTT
GCCCCTCCTTGATTCATGCAGAGATTGGGCGAACGAGGAGTGGGGTTATA
TGGCGCGGAAATGGCGCCGCGGCTAGGTCGAGTAAATTTTTGGTTCGGGA
AGGTCATATCTCTCTCTCTCTTTCTCGACCTGTGAGGAAGTGTAACATGT
CTGCTCACATACCCTCGCTCGACAGCGTATCGCTCGAATAGATTTTTTTT
TTAGTGCCTGTAGAGACCGGCTTGCGCCGAATTGAGACCCGGAGCGCCTC
GTAGACCTTAAGCTTTTTGGGTCTCTTCCACCTTGTTTTCTGATGTGCAC
GTGCACACTTTTACTTCATTGGAGAAAGTTTGTCGAAGGTTCGACAGGCC
CGTTGTTCCGCAGGCTCAAGCTCGATTATCTCCAATGTTCCGCCCATTTT
GCTTCTCAGCTTCTCATCTTCTCGGCAGCATAGGGCCGGTGGCCCCCCAT
AACGTAATGAAAAATAGTGAACCAAGCCGGCCATGATGCCGTTCGCCCAC
ACGAAAGTGGCTATAGTAACCTCCACAAGTGCAGCAAGCTCTCACCTCCT
GCTGGCGAGACAGCTAGGCGGCGGTACAGGAATTGACGCACGGCTCGAGG
TTACCATGTTGACGCGGTGCAATGCGGACAACGCGACCTGAAAAAAACTT
TTTGGAAAAGGAGGAATCCCACGTACGTGGACGGAGACAGGAACGTGTGA
TTCTCGAAAGGCTGTGACACACTTGTACTCAGCGAGTGCGGGTGGAAAAT
GCCTTTCCAATTGCTGCTTGCATGCATGCGAACCGGTGGTCTTCTTTCTT
TAACATGTAACATGTTATTTATCGATCAAGCAGCAGTTGCGGTGTCCCGT
TGTAGAAAGGTTTCAAGCGTAGGTTGAGGTTTCGAAAGAGGACCCTCGAG
GACCCTCTGGCGACCGGTGGAGGGGAGATTGGTCATCCTATCGGTCCGCC
CGTAGGCCCGCCGCGTTCAGCAATCAGGAATTGCGATCGTCAATATGATA
CACGTTGATGGTGATAACACCGTACCAAGTCTCGTTTGTGAATCTGTGTG
CCTGTCTGTTGCCTCGGTGTCATCACAAAAAAACAAGTAAAACTAGTAAA
ATTTGTTTTCAACAGGAGAAACGGCGGTTGTTGCTTGGGTTGGGTCGTGA
CGTTAACCGCGGAAACCCCGAATCGCGGACGAAGAAGCGAATCCAGGTTC
GAACTCAATCCACGACAGCAGAGAGCAGTATCTCTGTAGCCCGAGTACGA
AGGGCAAGAAACGTCCGCAGATCCCTCCTTCAGAGCCTCCGCTTGGATTG
TTTTCGCGAAGGGCGTTCGTTCGAAGCGTCTGACTGACTCGCCAAAAGTA
TGTTCAGTGTGGAAAAGTCGAGCGCTGGTGGCGACCCTTCCCTACAATTT
CCGATCGGAGTTTCGACTTCGACCGACTCTTTCACCGGATCGTTGGTTCG
ACCCCTCCATCCTGGGTAACCCGTCTGCGATAGTAGCTCGGTGGAACTCG
TGCAGGTCCGCGCGACCCTCTGGTTCGGTGTGATGGAGTGACCCTCCAGT
CTCTTGCATCTTGTCTCTCGTGACATCTTGTCTCTCGTGACATCTTGTCT
CTCGTGACAAGCAGGCTAACGCCCGTGCGACCCTTCGTTTTCGTTCTCGT
TTTCGTTCCCTCCCTCCGGTATGACCTCTGTGTTCTGACCCTCCAGTAAT
CTGTGCTCTGCCCCTCCAGCCCAGCCGACTATCATACCACAGCACAGCAC
GGCACAGCACAGCATACCACAGCAGGGGGCCCGGGATGAGAACGTACCGA
TCGATCGAAAAATGGGGCTGCTACCGTACTGCTGCTGTAGGACCCTGGGA
GCATTCACCGCCGGTCGCAGAGGCGTCTTTGCGCGACCCACATAGTGTAG
CAGATCCCCATGCCCCTGATAAAGAGTGCCCCTGATAAGCATAATCGAAG
AATTCTCCAAAAGGCGTGGGGTTGACTGATGCCTCACGGACCGGACCAGG
ATGTCCGCGATGGTGCGGTGGGTGAAGTGCGATACCCGGGAATTTCCATT
TCGTTGGGCAGGGCGAGCAGCGCAGGCAGGTTCACTTCGGCAGGACGTCA
TTGTTTCGAAACCACGTGGATACGCCGCTGCATGTTCGCTCAAGATTGGC
GATCGCATGGGGCAAAGGCCCGACAATGATCAGCTTCCCGAGGATGCCTA
CCGGGCAAAGGGTGCACGCCATGTCTCCCTCCTCCTCTCTTATTTTGCAG
GACCAGACTGTATGTTCCCCTCTTTTTCTCATGCGTTACCACACCACACC
GCTCCGTAGTGGTTTGTTGTCTGGCGCTCTCACGTACATATACAAATTCC
TCTAAATGAAGTTGGTTTCTTGCAGGTCCTGTCTCATTACAGACAAGAAA
AGCGCATTTCGGGCAAGGACAAGAAAATCATGACCCATCGTTCTATCAGG
AAAGGTTTCCTGGTTATCACTGGTGACGGGGCCCCGTCGGAGGCGTTCTT
CTAGGCGACGTAGTGGGTCACTTGAAGACAATAACACGATTAATTGGAAC
TGTGTGCCGAATGGGTTGATTCGGAGGATGCCAGCAAGACGGGGCTGCCA
TACTTGTCTTCGATGAAACGCATGCGTGGCACGTGGTGCGAAGAACAGCA
GTCGCGGAGTTGCCGGGGTCCGATGATACAAGCGTACATCATGCATGATA
CAAGCGTACATCATACATGATAGACGCATATACCATGCATGATACACACA
TTCACCATTCATGGGCTAAGTATATAGTCTGCTAGACAGGTAAATTCGAA
GATAGGGTGATATTGCAATCACGGCTTTTCATTCAAGCGTTTTTGATCAG
CGGCACTTGGTGTCCTACACATTATCCCAAGACTCCCTGAAGCTCCTCGA
AAAAGCAGTCCTGTCTGTGAATTTTTGATGCCCTCTTTTGCAGCTCGTAG
GCATGGGGTAGGTCTGTCCTACTAGACCCCGAAGAGCAACGAAATGAGGG
GCACGGTAGGATGGGCAATTGCAATCGTAGTGAGTTTGACTACTGCGATG
ATGCGCCGTTAAAGTCGGAGAACGACGTTACCCCGACAAACGGAAGAGAG
GGCGGGAAGGAAGGGAGGAAGGGAAGAAGGGAAGAAGGAGAGCAAAAGGG
AGAGAGGGAGGTATCGCCAGTAGACAGACCGAGTACACCTGTACACTCTT
GCTGATCGGGAGGTGAATGGTATGGTGTACTTTATGCCGCAGTCCTGCTC
CTCCGAGATATCCTCGCAGTGCGCGAAGCATCACCATCAGTGGTCTCCAT
GCGCCTTTCTGGTAGGACGAGGCCGTGGGCCGCGAACATTCGTGTCCCTC
TTACGTTTGCTTTGCAAGCACCTGCGGCGTGTCGCACGTGCGCCACACAC
GACCGTCCGATCGACCGACCGACCGACCGATGCCCTTGTGCCTCCACCCT
CCACCCCCACCTTCGCCCGCCTGCACTCCCTCTCAAACGTTCAGGATGGG
AGCGGCGAAATCGACCTCGACGAGCTGAGGACGGTCATGACTTCGCTCGG
GTACAGCCCCACGGACAAGCAGCTGGAGGACATGATGGAGAAGGTACGAG
TGCATGCGGGAGCCAGAAATGTGTTTTCTGGCACCGTACAGCCGTAGATA
CACCGTGGCGATTGTTCTGCGTGGTTGTTTTTTCGTCAGCTTCATCGTTC
GTCTGGTGCCGCACGTAGATCGATCGATCGCTCCGAAGCGTTCAGTAGAG
GCCACGGCCACATCGCGTTTACGGTGAAAATGTGACGTCGAACGTGGACG
AGGACGGATGGGGTGTGCGTCGAAAGGAGCAGACGAGTGGGGCCAACCGT
TGCGGTTCCGGAGGGTACTTGAGTTGTCCCATGTATGATGTGTCGGTTTT
GCGTCCTTCTCAGGCGGTTTTGGGTCCAGCCCATTGGGCGTTGTCGGCGG
CTGTTGGCGTGTGATCCGGTATCGACTGCACGCCGAGACCCTCCAACTCT
CCCACCGTGAACCTCGCGACGCAGTACGAAAGCATTTGAACGAGTTGTTC
TGGAGGTGCATTTCACGCCGGCCTGTCGAAGGAGATCACCTCCAGCAGAA
GGAGTGAAGCTGGGCAATATTACCTGACAGGCCACGCGGTTGTGTGTGTG
TGATGTGTGTGGCGTATGTCAGTTAGTGGTCGTTGTTTGCTCGCCCCTCT
TCGCGGAGGGATCGTCGAACAGCCCGACAACCCCCCGCAACCTGCCGGTC
TAGTGTGCACGGAGTCGGACTCGGAGGCCGCCCGGAGCGTTTGTGTGTGT
TCCACTCTGTCTGCGCCGTTTGCCTCTCGAAGTCGGTGCGCTACGTCCAC
ACCGTGCGGTTCGGTGTGTTGCAAAGTGAACGAGCCCTTCTGTTGGCATC
ACGTGCCTTGATTGCCGGGCTTGAGTGTAGATGAACCCCGAGGTGCCAAA
GCGCAGGCAGCACTCGATGCACTCGATGACCTCGACGAGCTCTCGTGTGC
CGTGCGCGCGGCTACATCCGTGTCCGTGTCCGTCCGGCACGGCCTGACGG
GGCGCCATCGGTCTTCCAGGAAGTGAACGGCAGTGCTCTTTTGTTCACTC
TTTTGTCCCTCCCGGTCGTTCGTTTGCCGCGTTGACCGCACATGAAGGTG
GACCTGGACGGGAATGGTCTCATCAACTTCGCTGAGTTCGTGACGATGAT
GCGCAAGTGTAAGGTCGACACCGACTTCGACAGGCAGATCAGGGAGGCGT
TCAAGGTGCTTGCTGGCTTGCGGTCTTGTCCACGACTCGAAGTGTGTGCT
AGAGAGGGTAGGATCGAGTGAAACGCGCCACCATTCGATGAAGGAAGGTG
GAGGGTCAGCACCTGGTTGTCTGAGTTACACAAGAGGTCAGGACGAGTCC
TCTGTGGTCTGTCGATATTCACAGAATGTAGCAGCAGCTAGATGAAAGAA
CATCGACAGTACCTAGGACAACGTCGAGAACATTATGGTTTCGCCTACAA
CCCTTTCTTCTGGAGCGATTCGTGGGCAATCTCCACCTTTCCTTGTGTCG
TCTCCCAGAATAAGCTGCGGCCTCACGTGGCATGGACAGTTTTCCTTGCC
CTCTTTTGAATCTTTGAATCTGCTCTTTTTCCGGCAGAGAAAGTGAACCA
CTTTGTGTTAGTATCGATAGTGTCAGGTCAAAGACATCCCCGCCCACCCC
CTCCCAGTTTTTCGATCAGGATGGTTCAGGGGCAATCGACACCAAGGAGC
TCGGGAATATCATGCGACAGTTAGGGGCAAAGCTAACGGACTCCGAGATC
AACCTCCTGGTGCAAGAGGCGGATGTGGACGGAGATGGCCAGGTGGACAT
CAACGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1458:661..6267-

>mRNA_H-canaliculatus_F_contig1458.3529.1 ID=mRNA_H-canaliculatus_F_contig1458.3529.1|Name=mRNA_H-canaliculatus_F_contig1458.3529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1458:661..6267- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGTAACTGAGGCAGACGCGATCAAGGACTTGACAGACGAGGAAGT
GGAGGATCTCAAGGAGACATTTCGCACATTCGACAAGATGGCGGTAACTG
AGGCAGACGCGATCAAGGACTTGACAGACGAGGAAGTGGAGGATCTCAAG
GAGACATTTCGCACATTCGACAAGGATGGGAGCGGCGAAATCGACCTCGA
CGAGCTGAGGACGGTCATGACTTCGCTCGGGTACAGCCCCACGGACAAGC
AGCTGGAGGACATGATGGAGAAGGATGGGAGCGGCGAAATCGACCTCGAC
GAGCTGAGGACGGTCATGACTTCGCTCGGGTACAGCCCCACGGACAAGCA
GCTGGAGGACATGATGGAGAAGGTGGACCTGGACGGGAATGGTCTCATCA
ACTTCGCTGAGTTCGTGACGATGATGCGCAAGTGTAAGGTCGACACCGAC
TTCGACAGGCAGATCAGGGAGGCGTTCAAGGTGGACCTGGACGGGAATGG
TCTCATCAACTTCGCTGAGTTCGTGACGATGATGCGCAAGTGTAAGGTCG
ACACCGACTTCGACAGGCAGATCAGGGAGGCGTTCAAGTTTTTCGATCAG
GATGGTTCAGGGGCAATCGACACCAAGGAGCTCGGGAATATCATGCGACA
GTTAGGGGCAAAGCTAACGGACTCCGAGATCAACCTCCTGGTGCAAGAGG
CGGATGTGGACGGAGATGGCCAGGTGGACATCAACGAGTTTTTCGATCAG
GATGGTTCAGGGGCAATCGACACCAAGGAGCTCGGGAATATCATGCGACA
GTTAGGGGCAAAGCTAACGGACTCCGAGATCAACCTCCTGGTGCAAGAGG
CGGATGTGGACGGAGATGGCCAGGTGGACATCAACGAG
back to top