mRNA_H-canaliculatus_F_contig14574.3528.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14574.3528.1
Unique NamemRNA_H-canaliculatus_F_contig14574.3528.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14574.3528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14574contigH-canaliculatus_F_contig14574:1313..1732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14574.3528.1prot_H-canaliculatus_F_contig14574.3528.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14574 1313..1620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.7443357-CDS-H-canaliculatus_F_contig14574:1312..14631622929206.7443357-CDS-H-canaliculatus_F_contig14574:1312..1463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14574 1313..1463 -
1696845717.6797967-CDS-H-canaliculatus_F_contig14574:1312..14631696845717.6797967-CDS-H-canaliculatus_F_contig14574:1312..1463Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14574 1313..1463 -
1622929206.7670114-CDS-H-canaliculatus_F_contig14574:1498..16201622929206.7670114-CDS-H-canaliculatus_F_contig14574:1498..1620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14574 1499..1620 -
1696845717.6960125-CDS-H-canaliculatus_F_contig14574:1498..16201696845717.6960125-CDS-H-canaliculatus_F_contig14574:1498..1620Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14574 1499..1620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.783117-UTR-H-canaliculatus_F_contig14574:1620..17321622929206.783117-UTR-H-canaliculatus_F_contig14574:1620..1732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14574 1621..1732 -
1696845717.7116363-UTR-H-canaliculatus_F_contig14574:1620..17321696845717.7116363-UTR-H-canaliculatus_F_contig14574:1620..1732Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14574 1621..1732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14574.3528.1

>prot_H-canaliculatus_F_contig14574.3528.1 ID=prot_H-canaliculatus_F_contig14574.3528.1|Name=mRNA_H-canaliculatus_F_contig14574.3528.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
MEAHALLQPRIFGRGPRRNAGGGRRETRCCSEVPAALQLRGATTTTRATA
TTRATATTREKRTASTRTKTPMTSTTTTKRRVAWTSLPPTS
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mRNA from alignment at H-canaliculatus_F_contig14574:1313..1732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14574.3528.1 ID=mRNA_H-canaliculatus_F_contig14574.3528.1|Name=mRNA_H-canaliculatus_F_contig14574.3528.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14574:1313..1732- (Hapterophycus canaliculatus Oshoro5f female)
CTCATAGCAGGCGTGCTGGACTCCGCTTCCTCGGCCAGTTTGTTGCGACT
TCGACTCAATAAACGTACGCGTCAGGTTTTCGCTCTTGCACAGGTGGCCA
GTGGGGCACCTTATGGAAGCCCATGCGCTTCTACAACCTCGAATTTTCGG
AAGAGGTCCTCGGCGAAACGCCGGCGGCGGCCGACGTGAAACTCGTTGCT
GCTCTGAGGTACCTGCGGCCTTACAACTACGAGGGCGACGACCACAAAAA
GGGCGACAACCATCACGAGGGCGACGACCACCACGAGGGCGACAGCCACC
ACGAGGGCGACGGCCACCACGAGGGAGAAGAGAACAGCGAGCACACGGAC
GAAGACCCCAATGACATCGACCACGACCACGAAGAGGAGAGTCGCGTGGA
CTTCACTGCCACCGACGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14574:1313..1732-

>mRNA_H-canaliculatus_F_contig14574.3528.1 ID=mRNA_H-canaliculatus_F_contig14574.3528.1|Name=mRNA_H-canaliculatus_F_contig14574.3528.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14574:1313..1732- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGCCCATGCGCTTCTACAACCTCGAATTTTCGGAAGAGGTCCTCG
GCGAAACGCCGGCGGCGGCCGACGTGAAACTCGTTGCTGCTCTGAGGTAC
CTGCGGCCTTACAACTACGAGGATGGAAGCCCATGCGCTTCTACAACCTC
GAATTTTCGGAAGAGGTCCTCGGCGAAACGCCGGCGGCGGCCGACGTGAA
ACTCGTTGCTGCTCTGAGGTACCTGCGGCCTTACAACTACGAGGGGCGAC
GACCACCACGAGGGCGACAGCCACCACGAGGGCGACGGCCACCACGAGGG
AGAAGAGAACAGCGAGCACACGGACGAAGACCCCAATGACATCGACCACG
ACCACGAAGAGGAGAGTCGCGTGGACTTCACTGCCACCGACGTCGGGCGA
CGACCACCACGAGGGCGACAGCCACCACGAGGGCGACGGCCACCACGAGG
GAGAAGAGAACAGCGAGCACACGGACGAAGACCCCAATGACATCGACCAC
GACCACGAAGAGGAGAGTCGCGTGGACTTCACTGCCACCGACGTCG
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