mRNA_H-canaliculatus_F_contig14560.3523.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig14560.3523.1
Unique NamemRNA_H-canaliculatus_F_contig14560.3523.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig14560.3523.1 vs. uniprot
Match: D8LGT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT4_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 7.280e-47
Identity = 110/180 (61.11%), Postives = 128/180 (71.11%), Query Frame = 3 
Query:    3 AMSALAELAVDGALSSSPVRRLLSAGGNCGNSGGXXXXKGSGSALSDAKVLLPQLRALAAVHAWPRRKVGLAVVRGLGVASPGSPIAVDLAVLASHVVRAGEGEDGRPRGS----------GVEEGDELERALWELLFGRRFRDESPKAAIGIAVALMRYHRGPLSRQSTLSAALVRAMG 512
            A++ALAE A DG LSS PV RLLS+ G  G         G  +A + A++LLPQLRALAAVHAWPR++V LAV R L    P S +AV+LAVL SHVVRAGEG+D   +GS          G   GD LER LWELLFGRRF D++PKAA+GIAVALMR+HRG LSRQSTLS+ALV AMG
Sbjct:  393 ALAALAEFAADGVLSSLPVLRLLSSRGISG---------GGPAAAAGARLLLPQLRALAAVHAWPRQRVALAVARSLRRVPPTSALAVELAVLVSHVVRAGEGDD---KGSXXXXXXXXXXGERLGD-LERVLWELLFGRRFCDDNPKAAVGIAVALMRHHRGSLSRQSTLSSALVGAMG 559
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BLAST of mRNA_H-canaliculatus_F_contig14560.3523.1 vs. uniprot
Match: A0A6H5KB40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB40_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.060e-33
Identity = 93/170 (54.71%), Postives = 110/170 (64.71%), Query Frame = 3 
Query:    3 AMSALAELAVDGALSSSPVRRLLSAGGNCGNSGGXXXXKGSGSALSDAKVLLPQLRALAAVHAWPRRKVGLAVVRGLGVASPGSPIAVDLAVLASHVVRAGEGEDGRPRGSGVEEGDELERALWELLFGRRFRDESPKAAIGIAVALMRYHRGPLSRQSTLSAALVRAMG 512
            A++ALAE A +G LSS PV RLLS+ G  G         G  +  + A++LLPQLRALAAVHAWPR++V LAV R L    P S +AV+LAVL SHVVRAGE +D    G G   G E    L +L           KAA+GIAVALMR+HRG LSRQSTLS+ALV AMG
Sbjct:  467 ALAALAEFAAEGVLSSLPVLRLLSSRGIGGG--------GPAAVAAGARLLLPQLRALAAVHAWPRQRVALAVARSLRRVPPTSALAVELAVLVSHVVRAGEVDDKGGGGEGAGTGGEK---LGDL----------EKAAVGIAVALMRHHRGSLSRQSTLSSALVGAMG 615
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig14560.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGT4_ECTSI7.280e-4761.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB40_9PHAE1.060e-3354.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig14560contigH-canaliculatus_F_contig14560:97..1064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size585
Cds size579
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig14560.3523.1prot_H-canaliculatus_F_contig14560.3523.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig14560 97..1059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.3241186-CDS-H-canaliculatus_F_contig14560:96..2641622929206.3241186-CDS-H-canaliculatus_F_contig14560:96..264Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14560 97..264 -
1696845717.5230618-CDS-H-canaliculatus_F_contig14560:96..2641696845717.5230618-CDS-H-canaliculatus_F_contig14560:96..264Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14560 97..264 -
1622929206.3373919-CDS-H-canaliculatus_F_contig14560:648..10591622929206.3373919-CDS-H-canaliculatus_F_contig14560:648..1059Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14560 649..1059 -
1696845717.5333695-CDS-H-canaliculatus_F_contig14560:648..10591696845717.5333695-CDS-H-canaliculatus_F_contig14560:648..1059Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig14560 649..1059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.3507786-UTR-H-canaliculatus_F_contig14560:1059..10641622929206.3507786-UTR-H-canaliculatus_F_contig14560:1059..1064Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14560 1060..1064 -
1696845717.5435007-UTR-H-canaliculatus_F_contig14560:1059..10641696845717.5435007-UTR-H-canaliculatus_F_contig14560:1059..1064Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig14560 1060..1064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig14560.3523.1

>prot_H-canaliculatus_F_contig14560.3523.1 ID=prot_H-canaliculatus_F_contig14560.3523.1|Name=mRNA_H-canaliculatus_F_contig14560.3523.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=193bp
MSALAELAVDGALSSSPVRRLLSAGGNCGNSGGGGGGKGSGSALSDAKVL
LPQLRALAAVHAWPRRKVGLAVVRGLGVASPGSPIAVDLAVLASHVVRAG
EGEDGRPRGSGVEEGDELERALWELLFGRRFRDESPKAAIGIAVALMRYH
RGPLSRQSTLSAALVRAMGDLQERGQPGKAFSGGGGGGGGGGG
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mRNA from alignment at H-canaliculatus_F_contig14560:97..1064-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig14560.3523.1 ID=mRNA_H-canaliculatus_F_contig14560.3523.1|Name=mRNA_H-canaliculatus_F_contig14560.3523.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=968bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14560:97..1064- (Hapterophycus canaliculatus Oshoro5f female)
AGGCCATGTCGGCGCTTGCGGAGCTCGCCGTGGACGGCGCTCTGTCCTCC
TCGCCCGTGCGGCGTCTGCTCTCCGCTGGCGGCAACTGCGGCAACAGCGG
CGGCGGCGGCGGCGGTAAGGGCAGCGGGTCTGCGTTGTCGGACGCGAAGG
TGCTGTTGCCGCAGCTGAGAGCGCTGGCCGCTGTCCACGCTTGGCCGCGT
AGAAAAGTCGGTTTGGCGGTTGTCAGGGGCCTCGGGGTCGCGTCTCCGGG
ATCCCCGATCGCCGTAGATCTGGCGGTGTTGGCGTCCCACGTCGTACGGG
CCGGCGAGGGCGAGGATGGAAGGCCGCGGGGGTCGGGAGTGGAAGAGGGA
GACGAGCTGGAGAGGGCGCTGTGGGAGCTGCTCTTCGGGCGGCGGTTCCG
CGACGAGAGTCCTAAGGTGTGAAAGAGCGACAGAGAGAGAGAGAGAGAGA
GAGAGAGTTAGCAGAAGGTTGCACGGCGTTGTGTTGTTTGTCTAGCGAGC
GCGACGGCGAATTGAGCGTGGATGTCGGGTTCAACTTCGAGGAGCGTTGA
TAGCGGCTCGCTCCAGTCGAAGGGACACCGCCGCGACTCCGAAAGTGGTG
TTTGTCCGGTCCTTCGCCGGCTCGAACGGTGGGACCGGTGAGTGCCAAGC
GGTGGTCCCAAGGGCCCGAGAAGTGACGCGCGCCGCGCTTGTCCCGTGCG
CCGCGTGCATCTAGAAGCGCTGCAGCGCGTGCGCACGGGAACGCTAACCG
GAGATCCGATCCCGCCTCCCTCGCCCAACGTCCACGTCCCGCCGCGACAG
GCGGCGATCGGCATCGCCGTTGCGCTGATGCGGTACCACCGTGGCCCTCT
CAGCCGACAGTCTACCCTGTCGGCAGCCCTCGTCCGAGCGATGGGGGATC
TCCAAGAAAGGGGGCAACCAGGGAAGGCTTTTAGCGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig14560:97..1064-

>mRNA_H-canaliculatus_F_contig14560.3523.1 ID=mRNA_H-canaliculatus_F_contig14560.3523.1|Name=mRNA_H-canaliculatus_F_contig14560.3523.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1158bp|location=Sequence derived from alignment at H-canaliculatus_F_contig14560:97..1064- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGCGCTTGCGGAGCTCGCCGTGGACGGCGCTCTGTCCTCCTCGCC
CGTGCGGCGTCTGCTCTCCGCTGGCGGCAACTGCGGCAACAGCGGCGGCG
GCGGCGGCGGTAAGGGCAGCGGGTCTGCGTTGTCGGACGCGAAGGTGCTG
TTGCCGCAGCTGAGAGCGCTGGCCGCTGTCCACGCTTGGCCGCGTAGAAA
AGTCGGTTTGGCGGTTGTCAGGGGCCTCGGGGTCGCGTCTCCGGGATCCC
CGATCGCCGTAGATCTGGCGGTGTTGGCGTCCCACGTCGTACGGGCCGGC
GAGGGCGAGGATGGAAGGCCGCGGGGGTCGGGAGTGGAAGAGGGAGACGA
GCTGGAGAGGGCGCTGTGGGAGCTGCTCTTCGGGCGGCGGTTCCGCGACG
AGAGTCCTAAGATGTCGGCGCTTGCGGAGCTCGCCGTGGACGGCGCTCTG
TCCTCCTCGCCCGTGCGGCGTCTGCTCTCCGCTGGCGGCAACTGCGGCAA
CAGCGGCGGCGGCGGCGGCGGTAAGGGCAGCGGGTCTGCGTTGTCGGACG
CGAAGGTGCTGTTGCCGCAGCTGAGAGCGCTGGCCGCTGTCCACGCTTGG
CCGCGTAGAAAAGTCGGTTTGGCGGTTGTCAGGGGCCTCGGGGTCGCGTC
TCCGGGATCCCCGATCGCCGTAGATCTGGCGGTGTTGGCGTCCCACGTCG
TACGGGCCGGCGAGGGCGAGGATGGAAGGCCGCGGGGGTCGGGAGTGGAA
GAGGGAGACGAGCTGGAGAGGGCGCTGTGGGAGCTGCTCTTCGGGCGGCG
GTTCCGCGACGAGAGTCCTAAGGCGGCGATCGGCATCGCCGTTGCGCTGA
TGCGGTACCACCGTGGCCCTCTCAGCCGACAGTCTACCCTGTCGGCAGCC
CTCGTCCGAGCGATGGGGGATCTCCAAGAAAGGGGGCAACCAGGGAAGGC
TTTTAGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGGCGATCG
GCATCGCCGTTGCGCTGATGCGGTACCACCGTGGCCCTCTCAGCCGACAG
TCTACCCTGTCGGCAGCCCTCGTCCGAGCGATGGGGGATCTCCAAGAAAG
GGGGCAACCAGGGAAGGCTTTTAGCGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGA
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